Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.77580 * 2 1 4 4 C 1.54325 * 110.72022 * 236.76221 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.45263 * 4 2 1 6 6 C 1.34774 * 125.79121 * 178.92556 * 5 4 2 7 7 O 1.21598 * 120.00083 * 0.02562 * 6 5 4 8 8 C 1.47516 * 119.99666 * 180.02562 * 6 5 4 9 9 C 1.36624 * 125.76358 * 179.71748 * 8 6 5 10 10 N 1.35075 * 106.79332 * 179.83564 * 9 8 6 11 11 C 1.40226 * 126.61490 * 180.14738 * 10 9 8 12 12 C 1.38828 * 120.06385 * 0.02562 * 11 10 9 13 13 C 1.38122 * 119.93167 * 179.69418 * 12 11 10 14 14 C 1.38282 * 120.06536 * 0.58353 * 13 12 11 15 15 C 1.38276 * 120.13144 * 359.71330 * 14 13 12 16 16 C 1.38126 * 120.06734 * 359.97438 * 15 14 13 17 17 N 1.40222 * 106.77282 * 0.41499 * 10 9 8 18 18 N 1.28749 * 108.38304 * 359.73200 * 17 10 9 19 19 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 20 20 C 1.54908 * 104.92961 * 24.15407 * 19 5 4 21 21 H 1.08999 * 111.00647 * 204.85975 * 20 19 5 22 22 N 1.46505 * 111.00088 * 81.00982 * 20 19 5 23 23 C 1.36935 * 119.99890 * 86.45669 * 22 20 19 24 24 H 1.08001 * 120.00526 * 359.97438 * 23 22 20 25 25 C 1.38818 * 120.00071 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99708 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00137 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47172 * 0.02562 * 27 25 23 29 29 H 1.48502 * 109.47065 * 119.99845 * 27 25 23 30 30 H 1.48502 * 109.47377 * 240.00123 * 27 25 23 31 31 H 1.08995 * 109.46983 * 296.76000 * 1 2 3 32 32 H 1.09001 * 109.47276 * 56.76464 * 1 2 3 33 33 H 1.09004 * 109.46998 * 176.76352 * 1 2 3 34 34 H 1.09004 * 109.88239 * 338.86059 * 4 2 1 35 35 H 1.08999 * 109.88411 * 100.02489 * 4 2 1 36 36 H 1.07997 * 126.60287 * 359.97438 * 9 8 6 37 37 H 1.07993 * 120.03307 * 359.97438 * 12 11 10 38 38 H 1.07994 * 119.96806 * 180.31560 * 13 12 11 39 39 H 1.07999 * 119.93718 * 179.69791 * 14 13 12 40 40 H 1.08002 * 119.96966 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.03546 * 180.02562 * 16 15 14 42 42 H 1.09002 * 110.36696 * 265.26054 * 19 5 4 43 43 H 1.08995 * 110.36608 * 143.04891 * 19 5 4 44 44 H 0.97002 * 120.00176 * 266.45171 * 22 20 19 45 45 H 0.96992 * 119.99644 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2466 -1.5526 -0.7390 6 6 3.9953 -2.3867 -1.4874 7 8 3.7233 -2.5614 -2.6597 8 6 5.1447 -3.0877 -0.8845 9 6 5.9760 -3.9595 -1.5293 10 7 6.8907 -4.3687 -0.6235 11 6 7.9441 -5.2671 -0.8460 12 6 8.1239 -5.8308 -2.1019 13 6 9.1662 -6.7105 -2.3197 14 6 10.0229 -7.0393 -1.2852 15 6 9.8426 -6.4842 -0.0316 16 6 8.8059 -5.5988 0.1906 17 7 6.5800 -3.7267 0.5838 18 7 5.5477 -2.9812 0.3933 19 6 3.4633 -1.2497 0.6875 20 6 2.0790 -0.7954 1.2138 21 1 2.1850 -0.1518 2.0870 22 7 1.2272 -1.9488 1.5144 23 6 1.2984 -2.5509 2.7422 24 1 1.9827 -2.1759 3.4889 25 6 0.4909 -3.6435 3.0273 26 7 -0.3435 -4.1004 2.1176 27 14 0.5885 -4.4654 4.7020 28 1 1.5965 -3.7660 5.5386 29 1 -0.7384 -4.3963 5.3653 30 1 0.9844 -5.8867 4.5336 31 1 -0.3633 0.4627 0.9176 32 1 -0.3634 0.5632 -0.8596 33 1 -0.3633 -1.0261 -0.0580 34 1 1.3130 -1.4758 -1.5776 35 1 2.3741 -0.1024 -1.9978 36 1 5.9150 -4.2613 -2.5644 37 1 7.4522 -5.5781 -2.9089 38 1 9.3097 -7.1454 -3.2977 39 1 10.8343 -7.7312 -1.4565 40 1 10.5135 -6.7425 0.7744 41 1 8.6659 -5.1653 1.1698 42 1 4.1932 -0.4478 0.7984 43 1 3.7969 -2.1414 1.2182 44 1 0.6128 -2.2860 0.8438 45 1 -0.9074 -4.8640 2.3167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054842289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 122.036100 kcal Electronic energy + Delta-G solvation = -29134.798508 eV Core-core repulsion = 25155.470797 eV Total energy + Delta-G solvation = -3979.327711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.44590 -39.76054 -39.31746 -37.44412 -34.84387 -33.78240 -32.36222 -31.74804 -30.89022 -30.42043 -29.91280 -27.66123 -26.39223 -24.42983 -24.10697 -23.72057 -22.59586 -21.62735 -21.35731 -19.71350 -19.17356 -18.36186 -17.39558 -16.79513 -16.28252 -16.10938 -15.89430 -15.40504 -15.31350 -14.91767 -14.50649 -14.32839 -14.09202 -13.93924 -13.68127 -13.35975 -13.00616 -12.86319 -12.69790 -12.39400 -12.20047 -12.04596 -11.86769 -11.68823 -11.50100 -11.36219 -11.09847 -11.02837 -10.87366 -10.64203 -10.34823 -10.16120 -9.87229 -9.80378 -9.57904 -9.56136 -9.52141 -8.95306 -8.79182 -8.15596 -6.93990 -5.75387 -3.03943 0.20945 0.83039 1.53955 1.82799 1.83236 3.26608 3.28632 3.44977 3.51315 3.53062 3.54334 4.09209 4.16477 4.37982 4.57506 4.59463 4.60958 4.76488 4.85500 4.89609 5.05269 5.12481 5.19711 5.27180 5.38383 5.48897 5.59739 5.63950 5.74381 5.82648 5.87824 5.94233 5.97407 6.01066 6.07911 6.15909 6.29447 6.32775 6.44005 6.45950 6.57119 6.67398 6.70996 6.93763 7.00544 7.74064 7.83914 7.94838 8.42757 8.44081 9.54792 10.10412 10.45150 11.47057 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003231 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.328773 B = 8663.790820 C =10473.021222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.614 3.386 7 O -0.554 6.554 8 C -0.076 4.076 9 C 0.087 3.913 10 N -0.317 5.317 11 C 0.140 3.860 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.119 4.119 15 C -0.098 4.098 16 C -0.106 4.106 17 N -0.059 5.059 18 N -0.179 5.179 19 C 0.068 3.932 20 C 0.170 3.830 21 H 0.071 0.929 22 N -0.709 5.709 23 C -0.238 4.238 24 H 0.073 0.927 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.279 1.279 29 H -0.292 1.292 30 H -0.293 1.293 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.206 0.794 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.386 0.614 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.205 -0.362 -9.633 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.099 0.901 4 C -0.004 4.004 5 N -0.314 5.314 6 C 0.401 3.599 7 O -0.433 6.433 8 C -0.214 4.214 9 C -0.066 4.066 10 N -0.095 5.095 11 C 0.048 3.952 12 C -0.148 4.148 13 C -0.115 4.115 14 C -0.138 4.138 15 C -0.117 4.117 16 C -0.126 4.126 17 N -0.038 5.038 18 N -0.052 5.052 19 C -0.058 4.058 20 C 0.057 3.943 21 H 0.089 0.911 22 N -0.350 5.350 23 C -0.369 4.369 24 H 0.091 0.909 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.204 1.204 29 H -0.219 1.219 30 H -0.221 1.221 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.222 0.778 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.222 0.778 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.435 -0.326 -8.622 21.264 hybrid contribution -0.335 -0.982 -0.292 1.078 sum 19.100 -1.307 -8.914 21.118 Atomic orbital electron populations 1.21603 0.93434 1.02980 1.00912 1.22508 0.97057 0.98555 0.95227 0.90130 1.22061 0.87422 0.94282 0.96655 1.48124 1.28597 1.42261 1.12449 1.16240 0.80488 0.78498 0.84722 1.90767 1.71378 1.65470 1.15659 1.21440 1.02730 1.06227 0.90982 1.23272 0.89476 0.96080 0.97808 1.47667 1.20642 1.31377 1.09863 1.17655 0.88728 0.93097 0.95676 1.20993 1.00111 0.98758 0.94942 1.21032 0.93869 0.96740 0.99837 1.21341 0.99599 0.99835 0.92976 1.21129 0.97037 0.95843 0.97651 1.21028 0.94232 0.98433 0.98862 1.82108 1.11916 1.08536 1.01248 1.74840 1.03642 1.12204 1.14560 1.23644 1.00310 1.02106 0.79712 1.21412 0.88794 0.89870 0.94209 0.91087 1.42383 1.45059 1.32452 1.15135 1.19277 1.17826 1.08974 0.90818 0.90935 1.24723 0.99158 0.98930 0.97894 1.69672 1.27407 1.27410 1.33393 0.86152 0.77142 0.79272 0.83854 1.20429 1.21928 1.22055 0.92075 0.93704 0.91236 0.91142 0.92033 0.77778 0.84696 0.84614 0.85098 0.84629 0.83948 0.92650 0.88046 0.77815 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.71 37.16 0.32 -1.78 16 2 C -0.11 -1.81 3.42 -88.78 -0.30 -2.11 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.00 6.48 -2.92 -0.02 1.98 16 5 N -0.58 -10.95 3.34 -171.53 -0.57 -11.52 16 6 C 0.61 11.81 7.85 -12.48 -0.10 11.71 16 7 O -0.55 -11.32 17.20 5.28 0.09 -11.23 16 8 C -0.08 -1.34 6.84 -83.54 -0.57 -1.91 16 9 C 0.09 1.21 10.60 -16.71 -0.18 1.04 16 10 N -0.32 -4.40 3.82 -10.42 -0.04 -4.43 16 11 C 0.14 1.54 6.70 -83.58 -0.56 0.98 16 12 C -0.13 -1.06 9.47 -39.41 -0.37 -1.44 16 13 C -0.10 -0.62 10.04 -39.61 -0.40 -1.01 16 14 C -0.12 -0.72 10.04 -39.55 -0.40 -1.12 16 15 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 16 C -0.11 -1.03 9.68 -39.40 -0.38 -1.42 16 17 N -0.06 -0.99 13.12 60.35 0.79 -0.20 16 18 N -0.18 -3.27 9.39 32.85 0.31 -2.96 16 19 C 0.07 1.27 5.81 -2.53 -0.01 1.26 16 20 C 0.17 3.27 3.44 -65.78 -0.23 3.04 16 21 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 22 N -0.71 -17.22 4.74 -51.35 -0.24 -17.47 16 23 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 24 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 27 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.31 6.35 -51.93 -0.33 0.98 16 34 H 0.07 1.29 7.77 -51.93 -0.40 0.89 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.21 2.12 7.13 -52.49 -0.37 1.74 16 37 H 0.14 0.90 6.81 -52.49 -0.36 0.54 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.14 1.44 7.73 -52.49 -0.41 1.04 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 2.18 6.13 -51.93 -0.32 1.86 16 44 H 0.39 10.10 6.08 -40.82 -0.25 9.85 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -34.01 377.28 -7.90 -41.91 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.79 Total: 8.90 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.84 Total: 1.09 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: 0.97 Total: -63.96 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.01 -7.90 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054842289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.949 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds