Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21592 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.47516 * 119.99605 * 180.02562 * 6 5 4 9 9 C 1.36616 * 125.76570 * 179.71293 * 8 6 5 10 10 N 1.35080 * 106.79420 * 179.83695 * 9 8 6 11 11 C 1.40230 * 126.61059 * 180.14673 * 10 9 8 12 12 C 1.38822 * 120.06527 * 0.02625 * 11 10 9 13 13 C 1.38131 * 119.92877 * 179.71821 * 12 11 10 14 14 C 1.38274 * 120.06686 * 0.55364 * 13 12 11 15 15 C 1.38288 * 120.12904 * 359.71971 * 14 13 12 16 16 C 1.38115 * 120.06572 * 0.02562 * 15 14 13 17 17 N 1.40211 * 106.76949 * 0.42088 * 10 9 8 18 18 N 1.28744 * 108.39201 * 359.73062 * 17 10 9 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.08006 * 126.60435 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.03820 * 359.96983 * 12 11 10 38 38 H 1.08000 * 119.96316 * 180.27016 * 13 12 11 39 39 H 1.07996 * 119.93912 * 179.74533 * 14 13 12 40 40 H 1.08002 * 119.96170 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.03104 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7992 8 6 5.7433 -1.9851 -1.0296 9 6 6.8500 -2.3384 -1.7484 10 7 7.8123 -2.6527 -0.8540 11 6 9.1195 -3.0695 -1.1439 12 6 9.5337 -3.1928 -2.4631 13 6 10.8238 -3.5980 -2.7453 14 6 11.6986 -3.8917 -1.7156 15 6 11.2870 -3.7752 -0.4005 16 6 9.9999 -3.3654 -0.1121 17 7 7.2501 -2.4878 0.4198 18 7 6.0324 -2.0944 0.2786 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 2.6922 0.6151 7.4638 29 1 1.3122 -1.2362 6.7231 30 1 3.7248 -1.3616 6.5115 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 6.9392 -2.3600 -2.8245 37 1 8.8494 -2.9683 -3.2679 38 1 11.1480 -3.6900 -3.7714 39 1 12.7055 -4.2123 -1.9387 40 1 11.9727 -4.0048 0.4017 41 1 9.6792 -3.2742 0.9151 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054842291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 117.235068 kcal Electronic energy + Delta-G solvation = -28649.363268 eV Core-core repulsion = 24669.827369 eV Total energy + Delta-G solvation = -3979.535899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53969 -39.84035 -39.39331 -37.47349 -34.91879 -33.99502 -32.48247 -31.81576 -30.98145 -30.63136 -30.00361 -27.43801 -26.53777 -24.50224 -24.25191 -23.75105 -22.45860 -21.70000 -21.15291 -19.88553 -19.76349 -18.41107 -17.05437 -16.98168 -16.40205 -16.25640 -15.98189 -15.50576 -15.43786 -14.98839 -14.61047 -14.39579 -14.04061 -13.99708 -13.47861 -13.46955 -13.12022 -13.06411 -12.63254 -12.48310 -12.36339 -12.24535 -12.03850 -11.61527 -11.51042 -11.43112 -11.28391 -11.06496 -10.89756 -10.62314 -10.54205 -10.21880 -10.04446 -9.86835 -9.66755 -9.65266 -9.58031 -8.90981 -8.87035 -8.27872 -7.00438 -5.76770 -3.06706 0.13284 0.77212 1.45002 1.72872 1.74474 3.13978 3.21967 3.37131 3.46518 3.51008 3.51939 4.01598 4.06577 4.31131 4.48456 4.52035 4.60776 4.69065 4.78965 4.80540 4.98889 5.05973 5.12822 5.22443 5.27048 5.43100 5.52407 5.63551 5.71081 5.76819 5.82991 5.87955 5.92643 5.95246 5.98946 6.06529 6.09267 6.27658 6.34297 6.49822 6.51438 6.60000 6.67111 6.69220 7.00569 7.70312 7.73991 7.83272 8.27762 8.40880 9.52795 10.06634 10.41706 11.45340 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.002880 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.576376 B = 9720.104129 C =12034.172191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.613 3.387 7 O -0.554 6.554 8 C -0.084 4.084 9 C 0.087 3.913 10 N -0.317 5.317 11 C 0.138 3.862 12 C -0.127 4.127 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.098 4.098 16 C -0.105 4.105 17 N -0.056 5.056 18 N -0.176 5.176 19 C 0.080 3.920 20 C 0.175 3.825 21 H 0.066 0.934 22 N -0.710 5.710 23 C -0.242 4.242 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.292 1.292 29 H -0.286 1.286 30 H -0.285 1.285 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.206 0.794 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.386 0.614 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -10.355 -16.972 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.326 5.326 6 C 0.399 3.601 7 O -0.432 6.432 8 C -0.221 4.221 9 C -0.066 4.066 10 N -0.095 5.095 11 C 0.047 3.953 12 C -0.148 4.148 13 C -0.115 4.115 14 C -0.136 4.136 15 C -0.116 4.116 16 C -0.125 4.125 17 N -0.034 5.034 18 N -0.050 5.050 19 C -0.045 4.045 20 C 0.063 3.937 21 H 0.084 0.916 22 N -0.350 5.350 23 C -0.373 4.373 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.218 1.218 29 H -0.212 1.212 30 H -0.211 1.211 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.222 0.778 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.559 -10.490 -15.920 23.989 hybrid contribution 0.215 -0.033 -0.010 0.218 sum 14.774 -10.524 -15.930 24.141 Atomic orbital electron populations 1.21608 0.93793 1.01547 1.02107 1.22634 0.96327 0.99838 0.94595 0.89737 1.22327 0.82173 0.98268 0.97949 1.48310 1.11506 1.63933 1.08840 1.16311 0.81122 0.77614 0.85032 1.90769 1.82763 1.56168 1.13550 1.21465 0.97420 1.13947 0.89312 1.23281 0.87496 0.97536 0.98307 1.47733 1.09384 1.45076 1.07334 1.17654 0.81043 1.01887 0.94758 1.20982 0.97836 1.02148 0.93829 1.21035 0.92274 0.98117 1.00093 1.21354 1.00220 0.99406 0.92666 1.21146 0.95057 0.98162 0.97249 1.21047 0.93096 0.98973 0.99352 1.82175 1.02690 1.20466 0.98117 1.74957 1.05836 1.07859 1.16356 1.23446 1.02672 1.02237 0.76194 1.21305 0.91823 0.93735 0.86864 0.91644 1.42326 1.86901 1.05233 1.00531 1.19190 1.42727 0.91879 0.83552 0.91044 1.24737 1.02539 0.95347 0.97915 1.69655 1.56813 1.02265 1.29175 0.86277 0.77942 0.77839 0.84189 1.21760 1.21248 1.21113 0.91275 0.93186 0.92826 0.90702 0.91299 0.77754 0.84724 0.84599 0.85058 0.84566 0.83880 0.90043 0.91684 0.77911 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.31 37.16 0.35 -1.53 16 2 C -0.11 -1.84 3.25 -88.47 -0.29 -2.13 16 3 H 0.08 1.45 8.00 -51.93 -0.42 1.03 16 4 C 0.12 1.75 6.37 -2.53 -0.02 1.74 16 5 N -0.60 -10.27 3.33 -171.75 -0.57 -10.85 16 6 C 0.61 10.61 7.85 -12.48 -0.10 10.51 16 7 O -0.55 -10.11 17.12 5.28 0.09 -10.02 16 8 C -0.08 -1.35 6.85 -83.54 -0.57 -1.92 16 9 C 0.09 1.10 10.60 -16.71 -0.18 0.92 16 10 N -0.32 -4.08 3.82 -10.42 -0.04 -4.12 16 11 C 0.14 1.40 6.69 -83.58 -0.56 0.84 16 12 C -0.13 -0.94 9.47 -39.40 -0.37 -1.31 16 13 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 14 C -0.12 -0.64 10.04 -39.55 -0.40 -1.04 16 15 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 16 C -0.10 -0.96 9.68 -39.41 -0.38 -1.35 16 17 N -0.06 -0.90 13.12 60.35 0.79 -0.11 16 18 N -0.18 -3.12 9.77 32.85 0.32 -2.80 16 19 C 0.08 1.52 5.27 -3.07 -0.02 1.51 16 20 C 0.17 3.41 3.06 -66.09 -0.20 3.20 16 21 H 0.07 1.28 8.02 -51.93 -0.42 0.86 16 22 N -0.71 -17.24 5.18 -51.65 -0.27 -17.51 16 23 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 27 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.07 0.96 7.99 -51.93 -0.41 0.54 16 36 H 0.21 1.79 7.13 -52.48 -0.37 1.42 16 37 H 0.13 0.75 6.81 -52.49 -0.36 0.39 16 38 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.14 1.40 7.73 -52.49 -0.41 0.99 16 42 H 0.08 1.76 7.50 -51.93 -0.39 1.37 16 43 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 44 H 0.39 10.03 7.71 -40.82 -0.31 9.71 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.24 381.60 -7.99 -41.23 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.99 Total: 7.79 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.78 Total: 0.38 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.96 Total: -62.45 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.24 -7.99 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054842291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.465 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds