Wall clock time and date at job start Sat Apr 11 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.63940 * 2 1 4 4 C 1.54317 * 110.72068 * 123.14173 * 2 1 3 5 5 N 1.47023 * 107.27299 * 140.73496 * 4 2 1 6 6 C 1.34774 * 125.64966 * 181.02333 * 5 4 2 7 7 O 1.21613 * 120.00132 * 184.93325 * 6 5 4 8 8 C 1.47322 * 119.99998 * 4.93799 * 6 5 4 9 9 C 1.37915 * 126.80272 * 353.41768 * 8 6 5 10 10 N 1.34201 * 107.89003 * 180.28176 * 9 8 6 11 11 H 0.96997 * 125.16766 * 179.74205 * 10 9 8 12 12 N 1.39776 * 109.66318 * 359.74258 * 10 9 8 13 13 C 1.31370 * 109.07568 * 0.02562 * 12 10 9 14 14 C 1.48262 * 126.51309 * 179.97438 * 13 12 10 15 15 C 1.39807 * 120.91000 * 325.02231 * 14 13 12 16 16 C 1.37971 * 119.01865 * 180.25381 * 15 14 13 17 17 N 1.31931 * 120.88068 * 359.40728 * 16 15 14 18 18 C 1.31926 * 122.01663 * 0.63600 * 17 16 15 19 19 C 1.37968 * 120.88584 * 359.65463 * 18 17 16 20 20 C 1.47423 * 108.70273 * 1.28570 * 5 4 2 21 21 C 1.55134 * 104.72004 * 335.55700 * 20 5 4 22 22 H 1.09005 * 111.22386 * 279.17096 * 21 20 5 23 23 N 1.46503 * 110.90718 * 155.27531 * 21 20 5 24 24 C 1.36937 * 120.00026 * 92.97140 * 23 21 20 25 25 H 1.07994 * 120.00023 * 0.02562 * 24 23 21 26 26 C 1.38818 * 119.99714 * 180.02562 * 24 23 21 27 27 N 1.31612 * 120.00175 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99876 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.46952 * 59.99865 * 28 26 24 30 30 H 1.48496 * 109.47210 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47508 * 300.00150 * 28 26 24 32 32 H 1.09002 * 109.47344 * 298.31167 * 1 2 3 33 33 H 1.09010 * 109.47387 * 58.31056 * 1 2 3 34 34 H 1.08999 * 109.47538 * 178.30654 * 1 2 3 35 35 H 1.08998 * 109.88242 * 21.31484 * 4 2 1 36 36 H 1.09004 * 110.01550 * 260.22264 * 4 2 1 37 37 H 1.07995 * 126.05712 * 0.02562 * 9 8 6 38 38 H 1.08006 * 120.49003 * 359.97438 * 15 14 13 39 39 H 1.07995 * 119.55888 * 179.70538 * 16 15 14 40 40 H 1.07998 * 119.55571 * 179.68039 * 18 17 16 41 41 H 1.08001 * 120.49256 * 179.97438 * 19 18 17 42 42 H 1.09000 * 110.36724 * 94.47979 * 20 5 4 43 43 H 1.08993 * 110.37132 * 216.81031 * 20 5 4 44 44 H 0.97003 * 119.99607 * 272.97638 * 23 21 20 45 45 H 0.97000 * 120.00159 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2471 -1.5461 0.7426 6 6 3.9957 -2.3766 1.4951 7 8 4.9978 -2.8833 1.0280 8 6 3.6000 -2.6709 2.8833 9 6 2.5730 -2.0834 3.5919 10 7 2.5531 -2.6290 4.8178 11 1 1.9304 -2.3947 5.5236 12 7 3.5661 -3.5864 4.9230 13 6 4.2187 -3.6479 3.7846 14 6 5.3663 -4.5330 3.4722 15 6 6.3122 -4.8546 4.4502 16 6 7.3677 -5.6777 4.1155 17 7 7.4839 -6.1679 2.8962 18 6 6.6140 -5.8890 1.9444 19 6 5.5320 -5.0694 2.1918 20 6 3.4707 -1.2413 -0.6823 21 6 2.0828 -0.7948 -1.2124 22 1 1.4510 -1.6542 -1.4371 23 7 2.2250 0.0699 -2.3865 24 6 2.1936 -0.4719 -3.6437 25 1 2.0636 -1.5365 -3.7698 26 6 2.3289 0.3474 -4.7561 27 7 2.4868 1.6450 -4.6024 28 14 2.2854 -0.3915 -6.4711 29 1 0.9831 -1.0729 -6.6836 30 1 2.4496 0.6866 -7.4790 31 1 3.3881 -1.3758 -6.6143 32 1 -0.3634 0.4874 0.9047 33 1 -0.3634 0.5399 -0.8745 34 1 -0.3634 -1.0272 -0.0304 35 1 1.3140 -1.4753 1.5781 36 1 2.3706 -0.1011 2.0010 37 1 1.9058 -1.3169 3.2265 38 1 6.2206 -4.4608 5.4518 39 1 8.1061 -5.9278 4.8628 40 1 6.7504 -6.3081 0.9584 41 1 4.8239 -4.8449 1.4078 42 1 4.1969 -0.4354 -0.7884 43 1 3.8101 -2.1313 -1.2120 44 1 2.3415 1.0262 -2.2732 45 1 2.5817 2.2174 -5.3797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054854853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:53 Heat of formation + Delta-G solvation = 101.838245 kcal Electronic energy + Delta-G solvation = -29115.124940 eV Core-core repulsion = 25134.921384 eV Total energy + Delta-G solvation = -3980.203556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56106 -39.86945 -39.54508 -37.50157 -34.32512 -33.75503 -32.48510 -31.38213 -31.06920 -30.73042 -30.39747 -27.50330 -26.45482 -24.53054 -24.20681 -23.57334 -22.80987 -21.13291 -20.80978 -20.15256 -19.71708 -17.86401 -17.11050 -16.83934 -16.52779 -16.24011 -16.03369 -15.79449 -15.21878 -14.90173 -14.50053 -14.30619 -13.91620 -13.78575 -13.71726 -13.60525 -13.32052 -13.06359 -12.86372 -12.80920 -12.67105 -11.94061 -11.85678 -11.62747 -11.35190 -11.14665 -11.07225 -10.77395 -10.72579 -10.65848 -10.31866 -10.04510 -9.89658 -9.76556 -9.53581 -9.37441 -9.10999 -9.04016 -8.89588 -8.37546 -7.11837 -5.87516 -3.18281 0.73439 1.17105 1.24994 2.09928 2.30065 3.14058 3.39097 3.40171 3.45092 3.45594 3.82393 3.95209 4.24772 4.44047 4.50134 4.66019 4.72550 4.76398 4.92878 4.98244 5.05105 5.09614 5.17657 5.20661 5.39601 5.42913 5.57300 5.59789 5.66756 5.72223 5.81253 5.81839 5.94157 6.06732 6.08692 6.18646 6.22732 6.33113 6.43385 6.50210 6.56561 6.65298 6.71603 6.83530 7.10589 7.61814 7.72888 7.93465 8.29544 8.36389 9.42042 9.94440 10.29131 11.34279 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002841 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.999124 B = 9853.072246 C =11610.106857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.099 3.901 5 N -0.608 5.608 6 C 0.599 3.401 7 O -0.537 6.537 8 C -0.266 4.266 9 C 0.095 3.905 10 N -0.464 5.464 11 H 0.445 0.555 12 N -0.277 5.277 13 C 0.165 3.835 14 C 0.019 3.981 15 C -0.144 4.144 16 C 0.085 3.915 17 N -0.480 5.480 18 C 0.092 3.908 19 C -0.101 4.101 20 C 0.084 3.916 21 C 0.178 3.822 22 H 0.069 0.931 23 N -0.709 5.709 24 C -0.249 4.249 25 H 0.072 0.928 26 C -0.007 4.007 27 N -0.930 5.930 28 Si 0.908 3.092 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.200 0.800 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -7.652 21.518 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.025 4.025 5 N -0.341 5.341 6 C 0.388 3.612 7 O -0.416 6.416 8 C -0.281 4.281 9 C -0.054 4.054 10 N -0.170 5.170 11 H 0.289 0.711 12 N -0.098 5.098 13 C -0.004 4.004 14 C 0.008 3.992 15 C -0.165 4.165 16 C -0.072 4.072 17 N -0.189 5.189 18 C -0.064 4.064 19 C -0.122 4.122 20 C -0.041 4.041 21 C 0.065 3.935 22 H 0.087 0.913 23 N -0.348 5.348 24 C -0.380 4.380 25 H 0.090 0.910 26 C -0.204 4.204 27 N -0.577 5.577 28 Si 0.739 3.261 29 H -0.212 1.212 30 H -0.217 1.217 31 H -0.210 1.210 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.217 0.783 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.221 0.779 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.737 -9.024 22.089 23.873 hybrid contribution -1.052 1.302 -1.039 1.971 sum -1.789 -7.722 21.050 22.493 Atomic orbital electron populations 1.21672 0.93862 1.01791 1.01890 1.22532 0.96417 0.99989 0.94607 0.89587 1.22390 0.87857 0.94367 0.97865 1.48316 1.29283 1.43909 1.12624 1.16768 0.82548 0.78537 0.83341 1.90776 1.25224 1.52331 1.73247 1.21347 1.02996 1.06528 0.97238 1.23838 0.97991 0.97776 0.85779 1.45990 1.27790 1.30808 1.12409 0.71059 1.77303 1.02129 1.09567 1.20828 1.21636 0.94433 0.94521 0.89806 1.17943 0.91940 0.95017 0.94259 1.22149 0.95173 0.99378 0.99826 1.22584 0.96465 0.94352 0.93758 1.67595 1.27967 1.22030 1.01322 1.22696 0.90130 0.95240 0.98356 1.22461 0.99472 0.94286 0.95985 1.23499 1.01718 1.01093 0.77816 1.21430 0.91927 0.93591 0.86535 0.91295 1.42274 1.86180 1.06167 1.00154 1.19200 1.43047 0.92669 0.83092 0.90988 1.24755 1.02141 0.95431 0.98024 1.69640 1.55848 1.02721 1.29497 0.86261 0.77954 0.77845 0.84079 1.21156 1.21654 1.21040 0.93320 0.91211 0.92819 0.91441 0.91823 0.78348 0.84739 0.82698 0.82372 0.83207 0.91406 0.90860 0.77877 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.14 37.16 0.34 -1.23 16 2 C -0.12 -1.53 3.18 -88.79 -0.28 -1.81 16 3 H 0.09 1.20 8.00 -51.93 -0.42 0.79 16 4 C 0.10 1.07 4.61 -3.07 -0.01 1.06 16 5 N -0.61 -8.82 3.32 -171.69 -0.57 -9.39 16 6 C 0.60 9.22 7.60 -12.57 -0.10 9.13 16 7 O -0.54 -9.81 13.13 5.27 0.07 -9.74 16 8 C -0.27 -3.37 6.24 -102.95 -0.64 -4.01 16 9 C 0.10 0.82 10.48 -16.63 -0.17 0.64 16 10 N -0.46 -3.62 7.20 30.81 0.22 -3.40 16 11 H 0.44 1.67 8.96 -182.84 -1.64 0.04 16 12 N -0.28 -3.16 12.64 34.57 0.44 -2.73 16 13 C 0.16 2.15 6.98 -80.57 -0.56 1.59 16 14 C 0.02 0.25 5.72 -104.60 -0.60 -0.35 16 15 C -0.14 -1.66 9.88 -39.09 -0.39 -2.04 16 16 C 0.09 0.96 11.17 -17.61 -0.20 0.76 16 17 N -0.48 -6.32 10.35 -13.35 -0.14 -6.46 16 18 C 0.09 1.19 11.17 -17.61 -0.20 0.99 16 19 C -0.10 -1.39 7.87 -39.09 -0.31 -1.70 16 20 C 0.08 1.47 6.59 -2.41 -0.02 1.46 16 21 C 0.18 3.14 3.18 -65.66 -0.21 2.93 16 22 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 23 N -0.71 -16.16 5.24 -51.23 -0.27 -16.43 16 24 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 25 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 26 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 27 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 28 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 34 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 35 H 0.07 0.58 6.48 -51.93 -0.34 0.24 16 36 H 0.06 0.55 7.09 -51.93 -0.37 0.18 16 37 H 0.20 1.08 4.51 -52.49 -0.24 0.85 16 38 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.15 2.19 6.00 -52.49 -0.31 1.88 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 44 H 0.39 9.40 7.76 -40.82 -0.32 9.08 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.41 372.87 -9.48 -42.89 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.97 Total: 8.57 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -3.59 Total: 0.49 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.41 Total: -64.44 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.41 -9.48 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054854853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.731 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds