Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21614 * 120.00015 * 359.97438 * 6 5 4 8 8 C 1.47315 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.37918 * 126.80219 * 359.68355 * 8 6 5 10 10 N 1.34193 * 107.89212 * 179.89607 * 9 8 6 11 11 H 0.97006 * 125.16813 * 180.16656 * 10 9 8 12 12 N 1.39770 * 109.66849 * 0.37883 * 10 9 8 13 13 C 1.31380 * 109.07105 * 359.76344 * 12 10 9 14 14 C 1.48258 * 126.51312 * 179.97438 * 13 12 10 15 15 C 1.39815 * 120.91064 * 144.74432 * 14 13 12 16 16 C 1.37971 * 119.01459 * 179.72982 * 15 14 13 17 17 N 1.31931 * 120.88378 * 0.55847 * 16 15 14 18 18 C 1.31927 * 122.01550 * 359.71453 * 17 16 15 19 19 C 1.37956 * 120.88961 * 0.02562 * 18 17 16 20 20 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 21 21 C 1.54371 * 107.28954 * 1.09430 * 20 5 4 22 22 H 1.09002 * 110.75632 * 140.50814 * 21 20 5 23 23 N 1.46503 * 110.70023 * 263.79270 * 21 20 5 24 24 C 1.36937 * 120.00076 * 268.48381 * 23 21 20 25 25 H 1.07999 * 120.00056 * 0.02562 * 24 23 21 26 26 C 1.38808 * 119.99763 * 180.02562 * 24 23 21 27 27 N 1.31624 * 119.99776 * 180.02562 * 26 24 23 28 28 Si 1.86800 * 120.00281 * 0.02562 * 26 24 23 29 29 H 1.48498 * 109.46953 * 90.00074 * 28 26 24 30 30 H 1.48499 * 109.47111 * 210.00138 * 28 26 24 31 31 H 1.48493 * 109.46960 * 330.00016 * 28 26 24 32 32 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 33 33 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 34 34 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 35 35 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 36 36 H 1.09001 * 110.36876 * 36.13074 * 4 2 1 37 37 H 1.08000 * 126.05358 * 0.03031 * 9 8 6 38 38 H 1.08000 * 120.49155 * 0.02562 * 15 14 13 39 39 H 1.07997 * 119.55440 * 180.25232 * 16 15 14 40 40 H 1.08002 * 119.55085 * 179.97438 * 18 17 16 41 41 H 1.08000 * 120.49812 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.88343 * 120.47841 * 20 5 4 43 43 H 1.09000 * 109.88049 * 241.48392 * 20 5 4 44 44 H 0.97005 * 119.99923 * 88.48643 * 23 21 20 45 45 H 0.97005 * 120.00009 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3014 -1.4963 2.7999 8 6 5.7421 -1.9822 1.0311 9 6 6.0602 -2.1078 -0.3050 10 7 7.3366 -2.5134 -0.3887 11 1 7.8174 -2.6786 -1.2148 12 7 7.8667 -2.6664 0.8955 13 6 6.9451 -2.3585 1.7798 14 6 7.0933 -2.3868 3.2547 15 6 6.4496 -1.4419 4.0595 16 6 6.6101 -1.5082 5.4283 17 7 7.3668 -2.4392 5.9771 18 6 7.9956 -3.3457 5.2537 19 6 7.8856 -3.3553 3.8785 20 6 3.4674 -1.2743 -0.6957 21 6 2.0861 -0.8073 -1.2026 22 1 2.1921 -0.1689 -2.0798 23 7 1.2268 -1.9567 -1.4971 24 6 1.2058 -2.4906 -2.7580 25 1 1.8229 -2.0646 -3.5352 26 6 0.3912 -3.5794 -3.0371 27 7 0.3713 -4.0929 -4.2488 28 14 -0.6768 -4.3158 -1.6930 29 1 -2.0003 -3.6424 -1.6878 30 1 -0.8608 -5.7673 -1.9466 31 1 -0.0181 -4.1230 -0.3762 32 1 -0.3633 0.5246 0.8837 33 1 -0.3633 -1.0276 0.0125 34 1 -0.3634 0.5030 -0.8962 35 1 2.1560 -0.1714 2.0837 36 1 1.4509 -1.6689 1.4041 37 1 5.3996 -1.9120 -1.1368 38 1 5.8320 -0.6745 3.6166 39 1 6.1136 -0.7852 6.0584 40 1 8.6054 -4.0897 5.7446 41 1 8.4035 -4.1001 3.2925 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2891 -1.0394 44 1 0.6728 -2.3396 -0.7990 45 1 -0.1976 -4.8540 -4.4438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054854855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 109.562657 kcal Electronic energy + Delta-G solvation = -29581.401033 eV Core-core repulsion = 25601.532433 eV Total energy + Delta-G solvation = -3979.868600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45860 -39.85137 -39.63378 -37.64785 -34.27870 -33.68099 -32.71098 -31.31318 -31.05637 -30.65645 -30.26390 -28.34639 -26.29934 -24.39659 -24.17055 -23.50639 -22.89002 -21.45554 -20.70385 -19.81203 -19.57125 -17.97153 -17.54592 -16.79281 -16.48989 -16.17508 -15.97246 -15.79445 -15.19263 -14.83820 -14.51309 -14.41224 -14.21589 -13.90084 -13.76681 -13.65434 -13.41964 -12.92380 -12.82400 -12.68031 -12.26874 -12.22387 -11.87107 -11.72193 -11.55916 -11.27867 -11.11648 -10.87794 -10.63441 -10.62025 -10.41052 -10.12038 -9.89543 -9.72324 -9.50741 -9.30024 -9.15690 -9.04553 -8.83462 -8.39879 -7.49122 -5.94850 -3.32348 0.77965 1.18870 1.38128 2.17028 2.42539 3.15328 3.26284 3.29256 3.35896 3.43412 3.84788 4.05238 4.38954 4.43860 4.44513 4.62100 4.80734 4.93926 5.00008 5.01074 5.08054 5.13420 5.16988 5.22306 5.27155 5.43200 5.53222 5.60777 5.65286 5.71421 5.77651 5.84677 5.86068 5.97338 6.09093 6.10743 6.15615 6.26525 6.28633 6.44310 6.50806 6.62164 6.67420 6.85523 7.22233 7.71208 7.78803 7.94098 8.23913 8.35078 9.00731 9.73561 9.91656 11.22593 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003143 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.353014 B = 8906.188376 C = 9480.351162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.604 3.396 7 O -0.547 6.547 8 C -0.272 4.272 9 C 0.105 3.895 10 N -0.462 5.462 11 H 0.446 0.554 12 N -0.278 5.278 13 C 0.163 3.837 14 C 0.020 3.980 15 C -0.103 4.103 16 C 0.088 3.912 17 N -0.481 5.481 18 C 0.084 3.916 19 C -0.144 4.144 20 C 0.060 3.940 21 C 0.179 3.821 22 H 0.083 0.917 23 N -0.735 5.735 24 C -0.254 4.254 25 H 0.093 0.907 26 C 0.012 3.988 27 N -0.928 5.928 28 Si 0.878 3.122 29 H -0.281 1.281 30 H -0.290 1.290 31 H -0.277 1.277 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.205 0.795 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.335 7.640 10.589 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.006 4.006 5 N -0.336 5.336 6 C 0.395 3.605 7 O -0.427 6.427 8 C -0.287 4.287 9 C -0.044 4.044 10 N -0.168 5.168 11 H 0.291 0.709 12 N -0.100 5.100 13 C -0.007 4.007 14 C 0.010 3.990 15 C -0.124 4.124 16 C -0.068 4.068 17 N -0.191 5.191 18 C -0.072 4.072 19 C -0.165 4.165 20 C -0.066 4.066 21 C 0.067 3.933 22 H 0.101 0.899 23 N -0.377 5.377 24 C -0.383 4.383 25 H 0.111 0.889 26 C -0.184 4.184 27 N -0.574 5.574 28 Si 0.708 3.292 29 H -0.208 1.208 30 H -0.216 1.216 31 H -0.203 1.203 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.221 0.779 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.199 0.801 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.610 7.168 11.689 19.320 hybrid contribution -1.477 -0.744 -0.774 1.826 sum 12.132 6.424 10.915 17.538 Atomic orbital electron populations 1.21559 0.93545 1.02502 1.01404 1.22693 0.96867 0.98949 0.95287 0.89711 1.22249 0.82569 0.98245 0.97560 1.48223 1.11896 1.66087 1.07404 1.16741 0.81707 0.76740 0.85351 1.90712 1.82783 1.55543 1.13712 1.21192 0.96245 1.19704 0.91561 1.24050 0.86905 0.94230 0.99233 1.46016 1.09961 1.52982 1.07792 0.70899 1.77283 1.21140 1.23863 0.87669 1.21619 0.90059 0.96491 0.92482 1.17965 0.97132 0.96032 0.87895 1.22611 0.96105 0.99268 0.94443 1.22666 0.95383 0.96168 0.92587 1.67578 1.06990 1.03198 1.41307 1.22565 0.97548 0.96738 0.90394 1.22179 0.98891 0.99103 0.96315 1.23559 1.01789 1.01931 0.79314 1.21174 0.87673 0.89238 0.95235 0.89871 1.42809 1.49966 1.34509 1.10446 1.19028 1.22152 1.10607 0.86523 0.88948 1.24652 0.99524 0.98237 0.96020 1.69687 1.42582 1.26295 1.18883 0.86665 0.81349 0.79082 0.82119 1.20759 1.21604 1.20287 0.93221 0.92154 0.91694 0.90729 0.91634 0.77873 0.82670 0.82572 0.82725 0.84700 0.92035 0.90038 0.80109 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.91 37.16 0.33 -1.42 16 2 C -0.12 -1.54 3.51 -88.48 -0.31 -1.85 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.64 6.34 -2.53 -0.02 1.63 16 5 N -0.60 -8.84 3.33 -171.80 -0.57 -9.41 16 6 C 0.60 9.46 7.75 -12.57 -0.10 9.36 16 7 O -0.55 -9.49 12.74 5.27 0.07 -9.43 16 8 C -0.27 -3.83 6.25 -102.95 -0.64 -4.48 16 9 C 0.11 1.18 10.49 -16.64 -0.17 1.01 16 10 N -0.46 -4.67 7.20 30.81 0.22 -4.45 16 11 H 0.45 2.85 8.96 -182.84 -1.64 1.21 16 12 N -0.28 -3.61 12.65 34.57 0.44 -3.17 16 13 C 0.16 2.30 6.98 -80.57 -0.56 1.74 16 14 C 0.02 0.28 5.75 -104.60 -0.60 -0.32 16 15 C -0.10 -1.40 7.90 -39.09 -0.31 -1.71 16 16 C 0.09 1.11 11.17 -17.61 -0.20 0.92 16 17 N -0.48 -6.32 10.35 -13.35 -0.14 -6.46 16 18 C 0.08 0.97 11.17 -17.61 -0.20 0.78 16 19 C -0.14 -1.75 9.88 -39.09 -0.39 -2.13 16 20 C 0.06 0.83 4.74 -3.04 -0.01 0.81 16 21 C 0.18 2.76 3.39 -66.07 -0.22 2.54 16 22 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 23 N -0.74 -14.83 4.29 -51.63 -0.22 -15.06 16 24 C -0.25 -6.28 10.44 -15.06 -0.16 -6.44 16 25 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 26 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 27 N -0.93 -27.16 13.97 55.49 0.78 -26.38 16 28 Si 0.88 20.79 27.74 -169.99 -4.71 16.07 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 36 H 0.07 1.02 8.03 -51.93 -0.42 0.61 16 37 H 0.21 1.91 4.45 -52.49 -0.23 1.67 16 38 H 0.16 2.19 5.77 -52.49 -0.30 1.89 16 39 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.06 0.67 6.88 -51.93 -0.36 0.31 16 43 H 0.08 1.25 6.90 -51.93 -0.36 0.89 16 44 H 0.36 7.55 4.13 -40.82 -0.17 7.38 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -32.71 365.77 -9.06 -41.77 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.77 Total: 10.34 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -3.66 Total: 0.67 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.50 Total: -64.93 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.71 -9.06 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054854855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.330 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds