Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.91903 * 2 1 4 4 C 1.54915 * 111.00223 * 236.09866 * 2 1 3 5 5 N 1.47428 * 104.83125 * 204.91778 * 4 2 1 6 6 C 1.34774 * 125.64245 * 204.09359 * 5 4 2 7 7 O 1.21572 * 120.00785 * 359.97438 * 6 5 4 8 8 C 1.47699 * 119.99497 * 180.02562 * 6 5 4 9 9 C 1.41562 * 126.43943 * 180.02562 * 8 6 5 10 10 C 1.35326 * 105.55877 * 179.73919 * 9 8 6 11 11 N 1.35902 * 107.11545 * 0.40575 * 10 9 8 12 12 C 1.39914 * 124.96430 * 179.84088 * 11 10 9 13 13 C 1.39326 * 120.85656 * 179.72097 * 12 11 10 14 14 C 1.38010 * 119.08208 * 179.97438 * 13 12 11 15 15 N 1.31934 * 120.83118 * 359.97438 * 14 13 12 16 16 C 1.31930 * 121.88705 * 0.02562 * 15 14 13 17 17 C 1.38018 * 120.83381 * 359.97438 * 16 15 14 18 18 N 1.28485 * 110.07371 * 359.57139 * 11 10 9 19 19 C 1.47014 * 108.70141 * 24.35844 * 5 4 2 20 20 C 1.54334 * 107.27217 * 358.58266 * 19 5 4 21 21 H 1.08995 * 110.85175 * 219.67200 * 20 19 5 22 22 N 1.46501 * 110.66487 * 96.52356 * 20 19 5 23 23 C 1.36933 * 119.99995 * 91.41691 * 22 20 19 24 24 H 1.07997 * 120.00082 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00005 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00125 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00231 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47103 * 59.99781 * 27 25 23 29 29 H 1.48495 * 109.46987 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.46668 * 300.00064 * 27 25 23 31 31 H 1.09005 * 109.47309 * 182.44599 * 1 2 3 32 32 H 1.09006 * 109.47120 * 302.44489 * 1 2 3 33 33 H 1.08998 * 109.47244 * 62.44300 * 1 2 3 34 34 H 1.08998 * 110.36321 * 86.07857 * 4 2 1 35 35 H 1.08999 * 110.36664 * 323.75809 * 4 2 1 36 36 H 1.08001 * 127.21705 * 359.97438 * 9 8 6 37 37 H 1.08000 * 126.43867 * 180.27447 * 10 9 8 38 38 H 1.08004 * 120.46116 * 359.97438 * 13 12 11 39 39 H 1.08004 * 119.58758 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.58052 * 179.97438 * 16 15 14 41 41 H 1.07994 * 120.46131 * 180.02562 * 17 16 15 42 42 H 1.08998 * 109.88689 * 118.13218 * 19 5 4 43 43 H 1.09006 * 109.88209 * 239.29046 * 19 5 4 44 44 H 0.97009 * 119.99814 * 271.41665 * 22 20 19 45 45 H 0.96999 * 120.00183 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2432 -0.7734 6 6 4.4475 -1.5616 -1.5942 7 8 4.3001 -1.5006 -2.7994 8 6 5.7446 -1.9860 -1.0294 9 6 6.9015 -2.3489 -1.7601 10 6 7.8365 -2.6551 -0.8309 11 7 7.2581 -2.4905 0.3878 12 6 7.8950 -2.7106 1.6140 13 6 7.2202 -2.5091 2.8161 14 6 7.8838 -2.7378 4.0044 15 7 9.1396 -3.1423 4.0106 16 6 9.8122 -3.3442 2.8938 17 6 9.2202 -3.1380 1.6642 18 7 6.0425 -2.0978 0.2497 19 6 3.4656 -1.2796 0.6958 20 6 2.0861 -0.8080 1.2022 21 1 2.1922 -0.1701 2.0796 22 7 1.2245 -1.9551 1.4988 23 6 1.2043 -2.4882 2.7600 24 1 1.8237 -2.0633 3.5359 25 6 0.3875 -3.5748 3.0411 26 7 -0.3672 -4.0930 2.0954 27 14 0.3592 -4.3016 4.7618 28 1 -0.0778 -3.2642 5.7302 29 1 -0.5878 -5.4448 4.8007 30 1 1.7205 -4.7733 5.1222 31 1 -0.3634 -1.0268 0.0439 32 1 -0.3634 0.5514 0.8673 33 1 -0.3633 0.4754 -0.9111 34 1 2.1559 -0.1720 -2.0837 35 1 1.4518 -1.6704 -1.4025 36 1 7.0152 -2.3725 -2.8338 37 1 8.8508 -2.9728 -1.0220 38 1 6.1920 -2.1785 2.8181 39 1 7.3687 -2.5838 4.9411 40 1 10.8392 -3.6751 2.9423 41 1 9.7763 -3.3055 0.7537 42 1 3.6600 -2.2965 1.0365 43 1 4.2424 -0.6087 1.0630 44 1 0.6683 -2.3370 0.8018 45 1 -0.9382 -4.8521 2.2920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054892485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = 116.870062 kcal Electronic energy + Delta-G solvation = -29491.339990 eV Core-core repulsion = 25511.788263 eV Total energy + Delta-G solvation = -3979.551727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.10876 -40.34059 -39.56050 -37.52176 -34.63561 -33.94799 -32.44446 -31.95821 -30.83018 -30.59838 -30.28166 -27.71640 -26.61699 -24.73560 -24.18541 -23.79983 -22.62620 -21.53451 -21.34714 -19.31675 -19.26190 -18.58048 -17.58443 -16.75593 -16.44584 -16.39006 -16.19071 -15.72235 -15.39434 -14.93252 -14.58665 -14.34160 -14.12931 -14.01804 -13.84362 -13.67784 -13.38172 -13.06930 -12.93944 -12.59503 -12.16604 -12.08316 -11.91563 -11.51604 -11.12192 -11.04398 -10.98066 -10.91244 -10.70526 -10.40036 -10.28299 -10.06290 -9.96827 -9.86038 -9.63938 -9.63327 -9.47993 -8.99874 -8.91114 -8.22621 -7.05557 -5.83165 -3.12798 0.31649 0.69644 1.76337 2.01435 2.05277 3.25383 3.39353 3.41952 3.44122 3.45523 3.55361 3.96084 4.06482 4.28700 4.49180 4.52997 4.56295 4.70276 4.86459 5.03189 5.15703 5.22957 5.29162 5.37128 5.37969 5.44025 5.53436 5.56972 5.67307 5.68701 5.83615 5.94101 6.02467 6.13875 6.17200 6.22088 6.30785 6.36438 6.43273 6.57170 6.62300 6.68183 6.83664 6.97973 7.55761 7.63410 7.63577 7.84394 8.34363 8.38129 9.46384 10.01357 10.36329 11.38973 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008130 B = 0.004227 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.305241 B = 6622.141726 C = 9306.667479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.610 3.390 7 O -0.545 6.545 8 C 0.014 3.986 9 C -0.166 4.166 10 C -0.019 4.019 11 N -0.246 5.246 12 C 0.189 3.811 13 C -0.162 4.162 14 C 0.126 3.874 15 N -0.489 5.489 16 C 0.123 3.877 17 C -0.188 4.188 18 N -0.241 5.241 19 C 0.082 3.918 20 C 0.170 3.830 21 H 0.073 0.927 22 N -0.711 5.711 23 C -0.245 4.245 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.433 5.563 -2.953 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.007 4.007 5 N -0.322 5.322 6 C 0.396 3.604 7 O -0.422 6.422 8 C -0.149 4.149 9 C -0.193 4.193 10 C -0.157 4.157 11 N -0.028 5.028 12 C 0.089 3.911 13 C -0.183 4.183 14 C -0.030 4.030 15 N -0.199 5.199 16 C -0.035 4.035 17 C -0.211 4.211 18 N -0.073 5.073 19 C -0.044 4.044 20 C 0.058 3.942 21 H 0.090 0.910 22 N -0.352 5.352 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.184 0.816 41 H 0.162 0.838 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.374 5.476 -1.532 19.234 hybrid contribution -0.162 -0.730 -0.922 1.187 sum 18.212 4.746 -2.454 18.979 Atomic orbital electron populations 1.21560 0.93277 1.03567 1.00531 1.22656 0.97037 0.98455 0.95430 0.90379 1.22323 0.82322 0.98554 0.97500 1.48273 1.11579 1.63971 1.08413 1.16427 0.81085 0.77755 0.85126 1.90770 1.82494 1.55343 1.13619 1.22168 0.96792 1.06802 0.89180 1.21866 0.91275 1.05190 1.01001 1.23030 1.01337 1.07837 0.83470 1.42769 1.08148 1.47099 1.04828 1.17915 0.91950 0.97988 0.83202 1.22159 1.03100 1.02067 0.90990 1.22850 0.89885 0.92473 0.97829 1.67725 1.08796 1.12085 1.31248 1.22677 1.00032 0.94393 0.86370 1.21876 0.93219 1.04602 1.01377 1.73858 0.96931 1.15751 1.20711 1.23326 1.00657 1.02732 0.77702 1.21255 0.88409 0.89866 0.94704 0.90955 1.42443 1.48635 1.33266 1.10825 1.19175 1.20488 1.10163 0.87730 0.91091 1.24728 0.99350 0.98798 0.97562 1.69643 1.29872 1.26357 1.31859 0.86302 0.77248 0.78591 0.84216 1.21178 1.21727 1.21302 0.90784 0.92318 0.93704 0.90997 0.90932 0.81259 0.79696 0.82490 0.81289 0.81641 0.83796 0.90107 0.92395 0.77782 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.98 37.16 0.33 -1.75 16 2 C -0.12 -1.83 3.52 -88.47 -0.31 -2.14 16 3 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.12 1.94 6.34 -2.52 -0.02 1.93 16 5 N -0.59 -10.62 3.33 -171.68 -0.57 -11.19 16 6 C 0.61 11.24 7.86 -12.40 -0.10 11.14 16 7 O -0.55 -11.02 17.18 5.30 0.09 -10.93 16 8 C 0.01 0.22 6.97 -82.75 -0.58 -0.36 16 9 C -0.17 -2.13 10.80 -39.35 -0.42 -2.55 16 10 C -0.02 -0.20 10.82 -16.79 -0.18 -0.38 16 11 N -0.25 -3.16 3.51 -10.37 -0.04 -3.19 16 12 C 0.19 2.12 6.70 -83.36 -0.56 1.56 16 13 C -0.16 -1.85 9.67 -39.26 -0.38 -2.23 16 14 C 0.13 1.28 11.17 -17.59 -0.20 1.08 16 15 N -0.49 -5.06 10.36 -13.32 -0.14 -5.20 16 16 C 0.12 0.98 11.17 -17.59 -0.20 0.79 16 17 C -0.19 -1.53 9.50 -39.26 -0.37 -1.90 16 18 N -0.24 -3.75 8.77 33.43 0.29 -3.46 16 19 C 0.08 1.46 5.28 -3.06 -0.02 1.45 16 20 C 0.17 3.16 3.39 -66.09 -0.22 2.94 16 21 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 22 N -0.71 -16.52 4.46 -51.65 -0.23 -16.76 16 23 C -0.24 -6.36 9.96 -15.06 -0.15 -6.51 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 27 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.07 1.38 6.26 -51.93 -0.33 1.05 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 36 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.19 1.08 7.04 -52.49 -0.37 0.71 16 38 H 0.16 1.94 7.74 -52.48 -0.41 1.53 16 39 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 0.72 6.78 -52.49 -0.36 0.37 16 42 H 0.08 1.67 7.68 -51.93 -0.40 1.27 16 43 H 0.06 0.96 7.64 -51.93 -0.40 0.56 16 44 H 0.39 9.69 6.24 -40.82 -0.25 9.43 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -33.01 377.46 -8.51 -41.52 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.84 Total: 10.52 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -3.47 Total: 2.76 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.04 Total: -66.18 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.01 -8.51 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054892485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.393 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds