Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91134 * 2 1 4 4 C 1.54905 * 111.00757 * 236.09526 * 2 1 3 5 5 N 1.47428 * 104.83005 * 204.91596 * 4 2 1 6 6 C 1.34783 * 125.64363 * 204.09303 * 5 4 2 7 7 O 1.21573 * 120.00198 * 0.02562 * 6 5 4 8 8 C 1.47693 * 119.99510 * 180.02562 * 6 5 4 9 9 C 1.41562 * 126.43562 * 179.97438 * 8 6 5 10 10 C 1.35328 * 105.55714 * 180.02562 * 9 8 6 11 11 N 1.35906 * 107.11792 * 359.97438 * 10 9 8 12 12 C 1.39909 * 124.96723 * 179.97438 * 11 10 9 13 13 C 1.39331 * 120.85306 * 359.72900 * 12 11 10 14 14 C 1.38019 * 119.07535 * 179.72818 * 13 12 11 15 15 N 1.31937 * 120.83477 * 0.55256 * 14 13 12 16 16 C 1.31935 * 121.88435 * 359.71859 * 15 14 13 17 17 C 1.38012 * 120.83329 * 0.02562 * 16 15 14 18 18 N 1.28484 * 110.06684 * 359.72674 * 11 10 9 19 19 C 1.47017 * 108.70563 * 24.12485 * 5 4 2 20 20 C 1.54324 * 107.27321 * 358.94388 * 19 5 4 21 21 H 1.08995 * 110.72617 * 96.34448 * 20 19 5 22 22 N 1.46499 * 110.72129 * 219.44397 * 20 19 5 23 23 C 1.36931 * 120.00122 * 273.54344 * 22 20 19 24 24 H 1.08002 * 120.00098 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99535 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 180.27849 * 25 23 22 28 28 H 1.48497 * 109.47173 * 179.72427 * 27 25 23 29 29 H 1.48506 * 109.46866 * 299.71963 * 27 25 23 30 30 H 1.48501 * 109.47438 * 59.72083 * 27 25 23 31 31 H 1.09000 * 109.47369 * 296.10135 * 1 2 3 32 32 H 1.08999 * 109.47009 * 56.10715 * 1 2 3 33 33 H 1.09002 * 109.46507 * 176.10181 * 1 2 3 34 34 H 1.09001 * 110.36963 * 86.07513 * 4 2 1 35 35 H 1.09000 * 110.45879 * 323.79471 * 4 2 1 36 36 H 1.07996 * 127.22026 * 359.97438 * 9 8 6 37 37 H 1.07999 * 126.44186 * 180.02562 * 10 9 8 38 38 H 1.07992 * 120.46397 * 359.97438 * 13 12 11 39 39 H 1.07997 * 119.58195 * 180.26631 * 14 13 12 40 40 H 1.07996 * 119.58110 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.45847 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.88283 * 239.52716 * 19 5 4 43 43 H 1.09004 * 110.01221 * 118.43143 * 19 5 4 44 44 H 0.97001 * 119.99790 * 93.53861 * 22 20 19 45 45 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4478 -1.5615 -1.5938 7 8 4.3007 -1.4997 -2.7990 8 6 5.7448 -1.9856 -1.0289 9 6 6.9014 -2.3495 -1.7595 10 6 7.8345 -2.6613 -0.8303 11 7 7.2583 -2.4897 0.3885 12 6 7.8951 -2.7099 1.6147 13 6 9.2181 -3.1438 1.6650 14 6 9.8121 -3.3440 2.8946 15 7 9.1399 -3.1403 4.0115 16 6 7.8844 -2.7348 4.0052 17 6 7.2206 -2.5070 2.8168 18 7 6.0449 -2.0907 0.2502 19 6 3.4675 -1.2739 0.6962 20 6 2.0862 -0.8078 1.2024 21 1 1.4479 -1.6630 1.4241 22 7 2.2286 0.0498 2.3816 23 6 2.3033 -0.5088 3.6295 24 1 2.2576 -1.5817 3.7445 25 6 2.4377 0.3038 4.7469 26 7 2.4938 1.6113 4.6067 27 14 2.5474 -0.4588 6.4485 28 1 2.6922 0.6151 7.4638 29 1 1.3122 -1.2362 6.7231 30 1 3.7248 -1.3616 6.5115 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3632 -1.0253 -0.0699 34 1 2.1560 -0.1721 -2.0837 35 1 1.4526 -1.6705 -1.4041 36 1 7.0150 -2.3740 -2.8332 37 1 8.8471 -2.9849 -1.0213 38 1 9.7725 -3.3172 0.7545 39 1 10.8386 -3.6761 2.9432 40 1 7.3697 -2.5793 4.9418 41 1 6.1930 -2.1748 2.8187 42 1 4.2426 -0.5994 1.0601 43 1 3.6663 -2.2881 1.0427 44 1 2.2700 1.0134 2.2783 45 1 2.5881 2.1792 5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054892486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 112.794574 kcal Electronic energy + Delta-G solvation = -29497.296547 eV Core-core repulsion = 25517.568093 eV Total energy + Delta-G solvation = -3979.728454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.09080 -40.26522 -39.57401 -37.49251 -34.58799 -34.07679 -32.56744 -31.88743 -30.79874 -30.75313 -30.32811 -27.51051 -26.70076 -24.75322 -24.13493 -23.89300 -22.38498 -21.42394 -21.10888 -19.94318 -19.32220 -18.58652 -17.12744 -16.97674 -16.43924 -16.31524 -16.12019 -15.80265 -15.50587 -14.94833 -14.65759 -14.17870 -14.02723 -13.93502 -13.81729 -13.54739 -13.36522 -13.16034 -13.02996 -12.61120 -12.39700 -12.13870 -12.00023 -11.53096 -11.17024 -11.06560 -10.94462 -10.93664 -10.67313 -10.59323 -10.29390 -10.08521 -9.93667 -9.87651 -9.72697 -9.54039 -9.46983 -8.99791 -8.88281 -8.30298 -7.09066 -5.85330 -3.15734 0.38043 0.79399 1.75616 2.04771 2.07464 3.17949 3.37064 3.42809 3.44068 3.45341 3.55890 4.00257 4.15839 4.34168 4.47516 4.54260 4.60769 4.76994 4.88359 5.06251 5.16011 5.21105 5.23126 5.35699 5.41958 5.53009 5.54129 5.56243 5.65018 5.77946 5.80429 5.85738 5.94051 6.00405 6.16146 6.23091 6.25581 6.28557 6.45472 6.55500 6.57648 6.62324 6.68321 6.93060 7.61512 7.63961 7.65647 7.77257 8.30222 8.32960 9.43838 9.98306 10.33651 11.36604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007085 B = 0.005064 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3950.880524 B = 5528.333000 C = 9220.727069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.598 5.598 6 C 0.612 3.388 7 O -0.545 6.545 8 C 0.007 3.993 9 C -0.167 4.167 10 C -0.019 4.019 11 N -0.244 5.244 12 C 0.185 3.815 13 C -0.188 4.188 14 C 0.121 3.879 15 N -0.488 5.488 16 C 0.128 3.872 17 C -0.157 4.157 18 N -0.236 5.236 19 C 0.083 3.917 20 C 0.175 3.825 21 H 0.065 0.935 22 N -0.710 5.710 23 C -0.245 4.245 24 H 0.071 0.929 25 C -0.007 4.007 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.285 1.285 30 H -0.285 1.285 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.169 0.831 37 H 0.186 0.814 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -9.241 -9.393 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.398 3.602 7 O -0.422 6.422 8 C -0.155 4.155 9 C -0.194 4.194 10 C -0.157 4.157 11 N -0.026 5.026 12 C 0.086 3.914 13 C -0.211 4.211 14 C -0.037 4.037 15 N -0.197 5.197 16 C -0.029 4.029 17 C -0.179 4.179 18 N -0.068 5.068 19 C -0.043 4.043 20 C 0.063 3.937 21 H 0.083 0.917 22 N -0.350 5.350 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.211 1.211 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.188 0.812 41 H 0.178 0.822 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.221 0.779 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.807 -9.319 -7.965 16.343 hybrid contribution 0.213 -0.017 -0.643 0.677 sum 11.020 -9.336 -8.607 16.813 Atomic orbital electron populations 1.21609 0.93774 1.01565 1.02126 1.22632 0.96356 0.99820 0.94569 0.89758 1.22322 0.82260 0.98265 0.97951 1.48367 1.11633 1.64276 1.08688 1.16459 0.81066 0.77586 0.85078 1.90767 1.82445 1.55394 1.13632 1.22125 0.96806 1.07343 0.89271 1.21843 0.91327 1.05326 1.00935 1.23038 1.01373 1.07807 0.83481 1.42782 1.08343 1.46571 1.04877 1.17921 0.92019 0.98368 0.83141 1.21854 0.93177 1.04735 1.01314 1.22672 0.99972 0.94645 0.86403 1.67738 1.08775 1.12018 1.31207 1.22899 0.89779 0.92179 0.98027 1.22235 1.03476 1.01288 0.90886 1.73910 0.97170 1.15204 1.20551 1.23372 1.02584 1.01776 0.76581 1.21296 0.91765 0.93748 0.86898 0.91684 1.42333 1.86942 1.05255 1.00515 1.19173 1.43052 0.91818 0.83571 0.91113 1.24737 1.02497 0.95319 0.97840 1.69652 1.56518 1.02276 1.29244 0.86312 0.77966 0.77866 0.84278 1.21693 1.21203 1.21138 0.91291 0.93137 0.92823 0.90689 0.91333 0.81305 0.79704 0.83877 0.81697 0.81170 0.82159 0.90326 0.92046 0.77892 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.31 37.16 0.35 -1.50 16 2 C -0.11 -1.80 3.25 -88.47 -0.29 -2.09 16 3 H 0.08 1.42 8.00 -51.93 -0.42 1.00 16 4 C 0.11 1.74 6.37 -2.53 -0.02 1.72 16 5 N -0.60 -10.23 3.33 -171.69 -0.57 -10.80 16 6 C 0.61 10.82 7.86 -12.40 -0.10 10.73 16 7 O -0.55 -10.50 17.18 5.30 0.09 -10.41 16 8 C 0.01 0.12 6.97 -82.75 -0.58 -0.46 16 9 C -0.17 -2.11 10.80 -39.35 -0.42 -2.54 16 10 C -0.02 -0.20 10.82 -16.78 -0.18 -0.38 16 11 N -0.24 -3.25 3.51 -10.37 -0.04 -3.29 16 12 C 0.18 2.26 6.70 -83.36 -0.56 1.70 16 13 C -0.19 -1.68 9.50 -39.26 -0.37 -2.05 16 14 C 0.12 1.08 11.17 -17.59 -0.20 0.89 16 15 N -0.49 -5.72 10.36 -13.32 -0.14 -5.86 16 16 C 0.13 1.55 11.17 -17.59 -0.20 1.35 16 17 C -0.16 -2.08 9.67 -39.26 -0.38 -2.46 16 18 N -0.24 -3.79 8.77 33.43 0.29 -3.49 16 19 C 0.08 1.50 5.29 -3.07 -0.02 1.48 16 20 C 0.18 3.28 3.06 -66.09 -0.20 3.08 16 21 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 22 N -0.71 -16.52 5.18 -51.65 -0.27 -16.79 16 23 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 27 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 35 H 0.07 0.95 7.99 -51.93 -0.41 0.54 16 36 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.19 1.12 7.04 -52.49 -0.37 0.75 16 38 H 0.14 0.80 6.78 -52.49 -0.36 0.44 16 39 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.16 2.40 7.74 -52.49 -0.41 1.99 16 42 H 0.08 1.61 7.53 -51.93 -0.39 1.21 16 43 H 0.06 1.13 7.77 -51.93 -0.40 0.72 16 44 H 0.39 9.70 7.71 -40.82 -0.31 9.39 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -32.14 380.98 -8.58 -40.72 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.98 Total: 11.31 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -3.41 Total: 2.70 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.00 Total: -66.24 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.14 -8.58 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054892486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.510 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds