Wall clock time and date at job start Sat Apr 11 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34774 * 125.65557 * 181.09314 * 5 4 2 7 7 O 1.21575 * 119.99628 * 359.97438 * 6 5 4 8 8 C 1.47691 * 120.00527 * 179.97438 * 6 5 4 9 9 C 1.41560 * 126.43962 * 180.02562 * 8 6 5 10 10 C 1.35329 * 105.55773 * 180.02562 * 9 8 6 11 11 N 1.35905 * 107.11245 * 359.97438 * 10 9 8 12 12 C 1.39916 * 124.95943 * 179.97438 * 11 10 9 13 13 C 1.39330 * 120.85913 * 359.72057 * 12 11 10 14 14 C 1.38011 * 119.08048 * 179.77650 * 13 12 11 15 15 N 1.31933 * 120.83129 * 0.51177 * 14 13 12 16 16 C 1.31932 * 121.89200 * 359.73627 * 15 14 13 17 17 C 1.38019 * 120.82573 * 0.02562 * 16 15 14 18 18 N 1.28478 * 110.07396 * 359.72715 * 11 10 9 19 19 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 20 20 C 1.54912 * 104.83500 * 335.87099 * 19 5 4 21 21 H 1.09004 * 111.03866 * 155.09187 * 20 19 5 22 22 N 1.46501 * 111.00592 * 278.93728 * 20 19 5 23 23 C 1.36932 * 119.99720 * 267.19443 * 22 20 19 24 24 H 1.08009 * 120.00252 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00195 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99413 * 359.97438 * 25 23 22 27 27 Si 1.86791 * 120.00241 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.46856 * 90.00149 * 27 25 23 29 29 H 1.48503 * 109.47248 * 209.99901 * 27 25 23 30 30 H 1.48502 * 109.47541 * 330.00257 * 27 25 23 31 31 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 32 32 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 33 33 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 34 34 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 35 35 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 36 36 H 1.08002 * 127.21898 * 0.02666 * 9 8 6 37 37 H 1.07998 * 126.43740 * 180.02562 * 10 9 8 38 38 H 1.08002 * 120.45947 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.58711 * 180.22785 * 14 13 12 40 40 H 1.07991 * 119.58904 * 180.02562 * 16 15 14 41 41 H 1.08009 * 120.45507 * 180.02562 * 17 16 15 42 42 H 1.09003 * 110.37241 * 217.03467 * 19 5 4 43 43 H 1.09001 * 110.37136 * 94.70997 * 19 5 4 44 44 H 0.97001 * 119.99779 * 87.18834 * 22 20 19 45 45 H 0.97000 * 119.99503 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9997 -2.3796 1.4839 7 8 3.7279 -2.5545 2.6559 8 6 5.1519 -3.0793 0.8806 9 6 6.0266 -3.9789 1.5361 10 6 6.9207 -4.3652 0.5966 11 7 6.5904 -3.7263 -0.5565 12 6 7.2744 -3.8576 -1.7700 13 6 8.3907 -4.6846 -1.8754 14 6 9.0348 -4.7904 -3.0914 15 7 8.6119 -4.1133 -4.1418 16 6 7.5622 -3.3164 -4.0809 17 6 6.8605 -3.1597 -2.9027 18 7 5.5553 -2.9883 -0.3708 19 6 3.4651 -1.2447 -0.6914 20 6 2.0789 -0.7934 -1.2152 21 1 2.1813 -0.1491 -2.0884 22 7 1.2293 -1.9486 -1.5152 23 6 1.2036 -2.4691 -2.7815 24 1 1.8093 -2.0277 -3.5592 25 6 0.3990 -3.5640 -3.0657 26 7 -0.3387 -4.1022 -2.1178 27 14 0.3634 -4.2736 -4.7932 28 1 1.4076 -5.3220 -4.9193 29 1 -0.9710 -4.8699 -5.0560 30 1 0.6253 -3.1931 -5.7777 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3633 0.5246 0.8837 33 1 -0.3633 0.5029 -0.8962 34 1 2.3775 -0.1016 1.9963 35 1 1.3191 -1.4773 1.5770 36 1 5.9883 -4.2913 2.5692 37 1 7.7417 -5.0527 0.7367 38 1 8.7446 -5.2384 -1.0184 39 1 9.8987 -5.4320 -3.1832 40 1 7.2480 -2.7799 -4.9639 41 1 6.0018 -2.5060 -2.8597 42 1 3.7992 -2.1364 -1.2219 43 1 4.1929 -0.4409 -0.8031 44 1 0.6851 -2.3448 -0.8167 45 1 -0.9006 -4.8675 -2.3163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054892487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:07 Heat of formation + Delta-G solvation = 117.856286 kcal Electronic energy + Delta-G solvation = -29777.912355 eV Core-core repulsion = 25798.403394 eV Total energy + Delta-G solvation = -3979.508961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02644 -40.28361 -39.51396 -37.46357 -34.56674 -33.86788 -32.44057 -31.90159 -30.75813 -30.57575 -30.23287 -27.74249 -26.56976 -24.68019 -24.12769 -23.81527 -22.57659 -21.46129 -21.25349 -19.33237 -19.19941 -18.55208 -17.52635 -16.69260 -16.37302 -16.33066 -16.13765 -15.75713 -15.36986 -14.95282 -14.53832 -14.21801 -14.08188 -13.92765 -13.78760 -13.67628 -13.28182 -13.02554 -12.93075 -12.57986 -12.12646 -12.06669 -11.92339 -11.57120 -11.12639 -10.95496 -10.91110 -10.88851 -10.66542 -10.36976 -10.23963 -10.00068 -9.93280 -9.81373 -9.63825 -9.58152 -9.39167 -9.01849 -8.83110 -8.19122 -7.01114 -5.81783 -3.10941 0.38222 0.74927 1.84850 2.08153 2.14617 3.31130 3.38868 3.43915 3.46189 3.47934 3.64772 4.03032 4.11144 4.35171 4.52973 4.55865 4.63269 4.75736 4.91337 5.07138 5.21210 5.22591 5.34592 5.35881 5.43498 5.50117 5.59322 5.61342 5.67332 5.73896 5.82597 5.95882 6.03838 6.18657 6.23634 6.25086 6.27897 6.38985 6.41724 6.59569 6.65273 6.69131 6.91031 6.97187 7.60515 7.64339 7.71374 7.90156 8.35889 8.46244 9.47669 10.03656 10.38423 11.40395 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.004606 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.135296 B = 6077.373753 C = 8374.301455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.612 3.388 7 O -0.545 6.545 8 C 0.017 3.983 9 C -0.166 4.166 10 C -0.019 4.019 11 N -0.247 5.247 12 C 0.191 3.809 13 C -0.188 4.188 14 C 0.122 3.878 15 N -0.490 5.490 16 C 0.125 3.875 17 C -0.161 4.161 18 N -0.240 5.240 19 C 0.070 3.930 20 C 0.170 3.830 21 H 0.074 0.926 22 N -0.708 5.708 23 C -0.242 4.242 24 H 0.071 0.929 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.144 0.856 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.266 3.358 2.660 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.318 5.318 6 C 0.399 3.601 7 O -0.422 6.422 8 C -0.146 4.146 9 C -0.193 4.193 10 C -0.157 4.157 11 N -0.029 5.029 12 C 0.091 3.909 13 C -0.211 4.211 14 C -0.035 4.035 15 N -0.199 5.199 16 C -0.031 4.031 17 C -0.183 4.183 18 N -0.072 5.072 19 C -0.056 4.056 20 C 0.057 3.943 21 H 0.092 0.908 22 N -0.348 5.348 23 C -0.373 4.373 24 H 0.089 0.911 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.222 0.778 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.358 3.590 1.287 17.772 hybrid contribution -0.441 -1.112 0.890 1.491 sum 16.916 2.479 2.177 17.235 Atomic orbital electron populations 1.21594 0.93386 1.03238 1.00634 1.22550 0.97149 0.98515 0.95350 0.90287 1.22001 0.87442 0.94405 0.96682 1.48134 1.28675 1.42652 1.12325 1.16404 0.80498 0.78432 0.84812 1.90766 1.70915 1.64838 1.15678 1.22133 0.99705 1.02568 0.90214 1.21856 0.95637 1.00521 1.01303 1.23016 1.03982 1.03303 0.85376 1.42784 1.20302 1.32085 1.07710 1.17914 0.92164 0.97118 0.83681 1.21876 0.96312 1.01537 1.01364 1.22662 0.98218 0.95704 0.86899 1.67711 1.13833 1.06974 1.31426 1.22821 0.89694 0.93727 0.96868 1.22140 1.02818 1.01441 0.91899 1.73831 1.00252 1.14112 1.18969 1.23611 1.00396 1.01607 0.79993 1.21401 0.88664 0.89900 0.94317 0.90810 1.42352 1.49739 1.32485 1.10199 1.19208 1.21149 1.09695 0.87288 0.91078 1.24730 0.99563 0.98757 0.97475 1.69663 1.30932 1.25398 1.31616 0.86245 0.76928 0.79041 0.84279 1.21881 1.21767 1.20640 0.91086 0.93788 0.92227 0.92064 0.91176 0.81290 0.79738 0.83803 0.81671 0.81371 0.82564 0.88474 0.92860 0.77806 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.76 37.16 0.33 -1.76 16 2 C -0.12 -1.81 3.41 -88.78 -0.30 -2.11 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.98 6.46 -3.07 -0.02 1.96 16 5 N -0.59 -10.83 3.33 -171.69 -0.57 -11.40 16 6 C 0.61 11.91 7.85 -12.40 -0.10 11.81 16 7 O -0.55 -11.60 17.25 5.30 0.09 -11.51 16 8 C 0.02 0.29 6.96 -82.75 -0.58 -0.28 16 9 C -0.17 -2.31 10.80 -39.35 -0.42 -2.74 16 10 C -0.02 -0.22 10.82 -16.78 -0.18 -0.40 16 11 N -0.25 -3.40 3.51 -10.37 -0.04 -3.44 16 12 C 0.19 2.30 6.70 -83.36 -0.56 1.74 16 13 C -0.19 -1.67 9.50 -39.26 -0.37 -2.04 16 14 C 0.12 1.06 11.17 -17.59 -0.20 0.86 16 15 N -0.49 -5.30 10.36 -13.32 -0.14 -5.44 16 16 C 0.13 1.32 11.18 -17.59 -0.20 1.13 16 17 C -0.16 -1.94 9.67 -39.26 -0.38 -2.32 16 18 N -0.24 -3.97 8.36 33.43 0.28 -3.69 16 19 C 0.07 1.24 5.85 -2.53 -0.01 1.23 16 20 C 0.17 3.16 3.47 -65.78 -0.23 2.93 16 21 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 22 N -0.71 -16.71 4.58 -51.34 -0.23 -16.94 16 23 C -0.24 -6.37 9.96 -15.06 -0.15 -6.52 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 27 Si 0.90 21.96 29.55 -169.99 -5.02 16.93 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.07 1.35 6.44 -51.93 -0.33 1.01 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 36 H 0.17 2.04 8.06 -52.49 -0.42 1.61 16 37 H 0.19 1.26 7.04 -52.49 -0.37 0.89 16 38 H 0.14 0.84 6.78 -52.49 -0.36 0.48 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.16 1.99 7.74 -52.48 -0.41 1.58 16 42 H 0.10 1.95 6.19 -51.93 -0.32 1.62 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.39 9.99 6.36 -40.82 -0.26 9.73 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -33.93 376.84 -8.50 -42.43 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.80 Total: 11.11 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.47 Total: 3.14 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: 0.02 Total: -67.77 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.93 -8.50 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054892487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.285 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds