Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21572 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47693 * 119.99945 * 180.02562 * 6 5 4 9 9 C 1.41564 * 126.43426 * 179.97438 * 8 6 5 10 10 C 1.35325 * 105.55686 * 180.02562 * 9 8 6 11 11 N 1.35916 * 107.11512 * 0.02562 * 10 9 8 12 12 C 1.39912 * 124.96161 * 179.97438 * 11 10 9 13 13 C 1.39321 * 120.85965 * 359.72601 * 12 11 10 14 14 C 1.38018 * 119.08053 * 179.77756 * 13 12 11 15 15 N 1.31930 * 120.83052 * 0.50038 * 14 13 12 16 16 C 1.31936 * 121.89054 * 359.74539 * 15 14 13 17 17 C 1.38015 * 120.82921 * 359.97438 * 16 15 14 18 18 N 1.28479 * 110.07124 * 359.72570 * 11 10 9 19 19 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 20 20 C 1.54320 * 107.27576 * 1.05739 * 19 5 4 21 21 H 1.08990 * 110.72081 * 263.83328 * 20 19 5 22 22 N 1.46496 * 110.72131 * 140.55218 * 20 19 5 23 23 C 1.36937 * 120.00105 * 91.48188 * 22 20 19 24 24 H 1.08011 * 119.99816 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00719 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99432 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00509 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46736 * 90.00033 * 27 25 23 29 29 H 1.48500 * 109.47463 * 209.99985 * 27 25 23 30 30 H 1.48496 * 109.47299 * 330.00637 * 27 25 23 31 31 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 32 32 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 33 33 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 34 34 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 35 35 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 36 36 H 1.07997 * 127.22252 * 359.97264 * 9 8 6 37 37 H 1.07999 * 126.44704 * 180.02562 * 10 9 8 38 38 H 1.08002 * 120.45937 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.58703 * 180.26942 * 14 13 12 40 40 H 1.07998 * 119.58603 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.46249 * 180.02562 * 17 16 15 42 42 H 1.09006 * 109.88301 * 120.47721 * 19 5 4 43 43 H 1.09003 * 109.88253 * 241.48112 * 19 5 4 44 44 H 0.97005 * 120.00849 * 271.48063 * 22 20 19 45 45 H 0.97002 * 120.00046 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3004 -1.4996 2.7996 8 6 5.7451 -1.9844 1.0297 9 6 6.9020 -2.3469 1.7605 10 6 7.8357 -2.6573 0.8314 11 7 7.2594 -2.4861 -0.3875 12 6 7.8972 -2.7044 -1.6136 13 6 9.2245 -3.1246 -1.6639 14 6 9.8160 -3.3331 -2.8933 15 7 9.1438 -3.1301 -4.0102 16 6 7.8873 -2.7276 -4.0042 17 6 7.2226 -2.5021 -2.8158 18 7 6.0420 -2.0997 -0.2493 19 6 3.4674 -1.2743 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 1.4468 -1.6636 -1.4204 22 7 2.2286 0.0488 -2.3815 23 6 2.1999 -0.5013 -3.6352 24 1 2.0726 -1.5672 -3.7544 25 6 2.3344 0.3108 -4.7529 26 7 2.4900 1.6097 -4.6076 27 14 2.2959 -0.4398 -6.4630 28 1 0.8967 -0.4685 -6.9595 29 1 3.1302 0.3767 -7.3808 30 1 2.8301 -1.8242 -6.4080 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 -1.0268 -0.0436 33 1 -0.3634 0.5511 -0.8674 34 1 2.1560 -0.1713 2.0837 35 1 1.4509 -1.6689 1.4042 36 1 7.0159 -2.3700 2.8342 37 1 8.8484 -2.9803 1.0226 38 1 9.7817 -3.2887 -0.7534 39 1 10.8432 -3.6631 -2.9418 40 1 7.3725 -2.5726 -4.9408 41 1 6.1939 -2.1730 -2.8178 42 1 4.2426 -0.6000 -1.0599 43 1 3.6678 -2.2892 -1.0393 44 1 2.3433 1.0061 -2.2746 45 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054892488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 112.547811 kcal Electronic energy + Delta-G solvation = -29463.988967 eV Core-core repulsion = 25484.249813 eV Total energy + Delta-G solvation = -3979.739154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.09520 -40.27113 -39.57464 -37.49077 -34.59293 -34.08157 -32.56123 -31.89310 -30.80392 -30.75652 -30.33046 -27.52685 -26.69956 -24.75356 -24.13746 -23.88003 -22.38888 -21.43019 -21.11645 -19.94648 -19.32427 -18.59233 -17.16225 -16.97592 -16.44137 -16.32134 -16.12149 -15.79421 -15.50970 -14.95576 -14.65788 -14.17206 -14.03505 -13.93752 -13.82081 -13.55281 -13.36856 -13.14846 -13.02978 -12.61438 -12.37612 -12.14294 -12.00680 -11.51400 -11.17776 -11.06520 -10.95714 -10.94419 -10.65469 -10.60273 -10.27204 -10.09206 -9.95421 -9.88194 -9.73048 -9.54636 -9.47431 -9.00379 -8.88759 -8.30594 -7.09328 -5.85813 -3.16176 0.37496 0.78771 1.75201 2.04524 2.06737 3.17747 3.37090 3.42916 3.44676 3.44973 3.55377 3.99737 4.15230 4.33672 4.47206 4.54008 4.60294 4.76562 4.88241 5.06118 5.15987 5.21163 5.24073 5.35163 5.41430 5.52619 5.53400 5.57128 5.65028 5.77207 5.80458 5.86632 5.94392 6.00556 6.15790 6.23012 6.24882 6.28282 6.46214 6.55324 6.58030 6.62394 6.68091 6.91722 7.61618 7.63529 7.65088 7.76965 8.29889 8.32540 9.43402 9.97772 10.33034 11.36150 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007128 B = 0.004956 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3927.302522 B = 5648.778853 C = 9309.779512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.612 3.388 7 O -0.545 6.545 8 C 0.007 3.993 9 C -0.167 4.167 10 C -0.019 4.019 11 N -0.244 5.244 12 C 0.185 3.815 13 C -0.188 4.188 14 C 0.121 3.879 15 N -0.488 5.488 16 C 0.128 3.872 17 C -0.157 4.157 18 N -0.237 5.237 19 C 0.082 3.918 20 C 0.176 3.824 21 H 0.068 0.932 22 N -0.710 5.710 23 C -0.245 4.245 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 -9.269 9.396 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.398 3.602 7 O -0.422 6.422 8 C -0.155 4.155 9 C -0.194 4.194 10 C -0.157 4.157 11 N -0.026 5.026 12 C 0.086 3.914 13 C -0.211 4.211 14 C -0.037 4.037 15 N -0.197 5.197 16 C -0.029 4.029 17 C -0.179 4.179 18 N -0.069 5.069 19 C -0.044 4.044 20 C 0.063 3.937 21 H 0.086 0.914 22 N -0.349 5.349 23 C -0.376 4.376 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.735 3.265 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.984 -9.362 7.968 16.486 hybrid contribution 0.148 0.007 0.644 0.661 sum 11.131 -9.355 8.612 16.899 Atomic orbital electron populations 1.21594 0.93790 1.01820 1.01758 1.22676 0.96377 0.99833 0.94678 0.89825 1.22314 0.82241 0.98292 0.97981 1.48362 1.11637 1.64275 1.08685 1.16457 0.81061 0.77602 0.85082 1.90767 1.82437 1.55391 1.13636 1.22127 0.96827 1.07306 0.89271 1.21844 0.91383 1.05258 1.00938 1.23040 1.01399 1.07780 0.83473 1.42783 1.08077 1.46843 1.04879 1.17921 0.91983 0.98399 0.83146 1.21854 0.93094 1.04806 1.01323 1.22671 1.00008 0.94600 0.86400 1.67733 1.08763 1.12039 1.31206 1.22899 0.89761 0.92209 0.98019 1.22235 1.03503 1.01272 0.90892 1.73906 0.97006 1.15395 1.20557 1.23387 1.02572 1.01780 0.76616 1.21296 0.91757 0.93738 0.86885 0.91400 1.42340 1.86278 1.06201 1.00102 1.19233 1.42643 0.92526 0.83188 0.91045 1.24736 1.02436 0.95407 0.97828 1.69661 1.56087 1.02853 1.29064 0.86240 0.77567 0.78070 0.84591 1.21647 1.21740 1.20641 0.93198 0.92801 0.91391 0.90714 0.91347 0.81302 0.79701 0.83877 0.81695 0.81149 0.82172 0.90419 0.91999 0.77897 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.29 37.16 0.35 -1.50 16 2 C -0.12 -1.83 3.27 -88.47 -0.29 -2.12 16 3 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 4 C 0.11 1.73 6.38 -2.53 -0.02 1.72 16 5 N -0.60 -10.20 3.33 -171.68 -0.57 -10.77 16 6 C 0.61 10.79 7.86 -12.40 -0.10 10.70 16 7 O -0.55 -10.49 17.18 5.30 0.09 -10.40 16 8 C 0.01 0.12 6.97 -82.75 -0.58 -0.46 16 9 C -0.17 -2.11 10.80 -39.35 -0.42 -2.53 16 10 C -0.02 -0.20 10.82 -16.78 -0.18 -0.38 16 11 N -0.24 -3.23 3.51 -10.37 -0.04 -3.27 16 12 C 0.18 2.23 6.70 -83.36 -0.56 1.68 16 13 C -0.19 -1.66 9.50 -39.26 -0.37 -2.03 16 14 C 0.12 1.07 11.17 -17.59 -0.20 0.88 16 15 N -0.49 -5.65 10.36 -13.32 -0.14 -5.79 16 16 C 0.13 1.52 11.18 -17.59 -0.20 1.32 16 17 C -0.16 -2.06 9.67 -39.26 -0.38 -2.44 16 18 N -0.24 -3.77 8.76 33.43 0.29 -3.47 16 19 C 0.08 1.49 5.30 -3.07 -0.02 1.47 16 20 C 0.18 3.29 3.08 -66.10 -0.20 3.08 16 21 H 0.07 1.28 7.96 -51.93 -0.41 0.86 16 22 N -0.71 -16.49 5.15 -51.65 -0.27 -16.75 16 23 C -0.24 -6.31 9.96 -15.06 -0.15 -6.46 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 26 N -0.93 -26.72 13.06 55.49 0.72 -25.99 16 27 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 35 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 36 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.19 1.11 7.04 -52.49 -0.37 0.74 16 38 H 0.14 0.79 6.78 -52.49 -0.36 0.43 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.16 2.36 7.74 -52.49 -0.41 1.95 16 42 H 0.08 1.57 7.55 -51.93 -0.39 1.18 16 43 H 0.06 1.13 7.76 -51.93 -0.40 0.73 16 44 H 0.39 9.71 7.76 -40.82 -0.32 9.39 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -32.19 381.04 -8.58 -40.78 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.99 Total: 11.10 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -3.41 Total: 2.62 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.01 Total: -66.05 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.19 -8.58 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054892488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.324 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds