Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.88762 * 2 1 4 4 C 1.55131 * 110.94227 * 124.07405 * 2 1 3 5 5 N 1.47422 * 104.72452 * 155.28888 * 4 2 1 6 6 C 1.34773 * 125.64841 * 155.82204 * 5 4 2 7 7 O 1.21579 * 120.00047 * 4.86910 * 6 5 4 8 8 C 1.47661 * 120.00222 * 184.59690 * 6 5 4 9 9 C 1.40231 * 120.49672 * 352.56038 * 8 6 5 10 10 C 1.38015 * 118.36009 * 179.97438 * 9 8 6 11 11 C 1.39160 * 119.25393 * 359.97438 * 10 9 8 12 12 N 1.39497 * 119.52725 * 179.97438 * 11 10 9 13 13 C 1.37227 * 126.49522 * 180.02562 * 12 11 10 14 14 C 1.34594 * 106.82318 * 179.97438 * 13 12 11 15 15 N 1.34171 * 108.23704 * 0.02562 * 14 13 12 16 16 C 1.30455 * 109.38356 * 359.75185 * 15 14 13 17 17 N 1.32427 * 120.94162 * 0.02562 * 11 10 9 18 18 C 1.31638 * 121.80455 * 359.71932 * 17 11 10 19 19 C 1.47020 * 108.70071 * 335.55708 * 5 4 2 20 20 C 1.54325 * 107.27438 * 1.28336 * 19 5 4 21 21 H 1.09001 * 110.71736 * 140.73279 * 20 19 5 22 22 N 1.46493 * 110.72030 * 263.83013 * 20 19 5 23 23 C 1.36937 * 120.00127 * 273.54608 * 22 20 19 24 24 H 1.07998 * 120.00028 * 359.97438 * 23 22 20 25 25 C 1.38814 * 119.99860 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00462 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99886 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46953 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47124 * 119.99615 * 27 25 23 30 30 H 1.48501 * 109.46819 * 239.99702 * 27 25 23 31 31 H 1.08999 * 109.46754 * 183.88354 * 1 2 3 32 32 H 1.09005 * 109.47339 * 303.88145 * 1 2 3 33 33 H 1.08995 * 109.47305 * 63.88299 * 1 2 3 34 34 H 1.09010 * 110.49246 * 36.44831 * 4 2 1 35 35 H 1.09005 * 110.34580 * 274.05743 * 4 2 1 36 36 H 1.08005 * 120.81796 * 359.95240 * 9 8 6 37 37 H 1.08001 * 120.37766 * 179.97438 * 10 9 8 38 38 H 1.08004 * 126.58682 * 359.96759 * 13 12 11 39 39 H 1.07995 * 125.87822 * 179.97438 * 14 13 12 40 40 H 1.08007 * 125.72897 * 180.26945 * 16 15 14 41 41 H 1.08000 * 119.68247 * 180.29345 * 18 17 11 42 42 H 1.09004 * 109.88016 * 120.70710 * 19 5 4 43 43 H 1.09004 * 109.88191 * 241.86350 * 19 5 4 44 44 H 0.97000 * 120.00181 * 93.54634 * 22 20 19 45 45 H 0.96993 * 120.00256 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8117 1.2001 5 7 3.4281 -1.2421 0.7725 6 6 4.4490 -1.5603 1.5928 7 8 4.2758 -1.5896 2.7959 8 6 5.7765 -1.8790 1.0301 9 6 5.9501 -2.0065 -0.3555 10 6 7.2099 -2.3048 -0.8337 11 6 8.2582 -2.4676 0.0670 12 7 9.5338 -2.7697 -0.4100 13 6 10.6637 -2.9600 0.3452 14 6 11.6649 -3.2295 -0.5130 15 7 11.1679 -3.2057 -1.7590 16 6 9.8923 -2.9365 -1.7112 17 7 8.0619 -2.3407 1.3705 18 6 6.8782 -2.0521 1.8689 19 6 3.4678 -1.2730 -0.6968 20 6 2.0861 -0.8075 -1.2025 21 1 2.1914 -0.1718 -2.0817 22 7 1.2274 -1.9574 -1.4963 23 6 1.2820 -2.5561 -2.7266 24 1 1.9579 -2.1803 -3.4805 25 6 0.4679 -3.6454 -3.0052 26 7 -0.3563 -4.1031 -2.0866 27 14 0.5429 -4.4626 -4.6833 28 1 1.5429 -3.7638 -5.5299 29 1 0.9366 -5.8855 -4.5238 30 1 -0.7916 -4.3878 -5.3304 31 1 -0.3633 -1.0253 0.0696 32 1 -0.3634 0.5729 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4537 -1.6784 1.3986 35 1 2.1524 -0.1801 2.0859 36 1 5.1184 -1.8747 -1.0318 37 1 7.3804 -2.4107 -1.8949 38 1 10.7357 -2.9040 1.4214 39 1 12.6917 -3.4296 -0.2447 40 1 9.2321 -2.8575 -2.5623 41 1 6.7578 -1.9520 2.9375 42 1 4.2426 -0.5981 -1.0609 43 1 3.6659 -2.2881 -1.0410 44 1 0.6200 -2.2947 -0.8194 45 1 -0.9248 -4.8644 -2.2811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = 117.944687 kcal Electronic energy + Delta-G solvation = -29065.465673 eV Core-core repulsion = 25085.960545 eV Total energy + Delta-G solvation = -3979.505128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.65953 -40.89401 -39.48892 -37.73466 -34.64570 -34.21705 -33.37369 -32.24067 -30.76899 -30.45361 -29.62110 -28.10502 -26.63517 -24.98770 -24.19463 -23.86087 -22.53437 -21.39048 -21.19924 -20.05677 -19.48126 -19.00848 -17.78495 -17.16899 -16.59958 -16.10463 -15.82946 -15.71439 -15.46023 -14.84324 -14.59188 -14.35059 -14.21908 -14.14991 -13.97466 -13.79045 -13.68711 -13.38146 -12.94485 -12.85408 -12.66485 -12.13732 -12.08203 -11.73491 -11.24855 -11.05128 -11.03120 -10.86142 -10.60766 -10.48114 -10.39786 -10.33205 -10.28018 -10.02353 -9.85133 -9.77087 -9.14789 -9.12506 -8.80564 -8.47564 -7.21187 -5.96896 -3.28172 0.05315 0.79758 1.75892 2.08556 2.76134 2.84689 3.01240 3.30685 3.36208 3.39573 3.56130 3.85621 4.16218 4.29150 4.36712 4.40832 4.52421 4.55323 4.76121 4.93255 4.99758 5.11966 5.18967 5.20076 5.26867 5.29471 5.46402 5.49284 5.59206 5.61035 5.68509 5.80114 5.85685 5.99204 6.00145 6.03409 6.18694 6.19498 6.33197 6.34819 6.40613 6.55488 6.76544 6.79539 7.33097 7.50893 7.59485 7.65054 8.13455 8.20537 9.32878 9.86087 10.20395 11.24816 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.003117 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.258926 B = 8980.155032 C =11065.130412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.575 3.425 7 O -0.545 6.545 8 C -0.186 4.186 9 C -0.047 4.047 10 C -0.185 4.185 11 C 0.359 3.641 12 N -0.412 5.412 13 C -0.025 4.025 14 C -0.032 4.032 15 N -0.478 5.478 16 C 0.196 3.804 17 N -0.504 5.504 18 C 0.192 3.808 19 C 0.054 3.946 20 C 0.171 3.829 21 H 0.074 0.926 22 N -0.711 5.711 23 C -0.253 4.253 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.926 5.926 27 Si 0.906 3.094 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.189 0.811 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.177 0.823 40 H 0.214 0.786 41 H 0.180 0.820 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.388 0.612 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.047 7.581 4.232 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.099 0.901 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.364 3.636 7 O -0.424 6.424 8 C -0.192 4.192 9 C -0.072 4.072 10 C -0.207 4.207 11 C 0.131 3.869 12 N -0.094 5.094 13 C -0.154 4.154 14 C -0.176 4.176 15 N -0.195 5.195 16 C -0.085 4.085 17 N -0.216 5.216 18 C 0.032 3.968 19 C -0.072 4.072 20 C 0.058 3.942 21 H 0.092 0.908 22 N -0.352 5.352 23 C -0.384 4.384 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.573 5.573 27 Si 0.737 3.263 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.205 0.795 37 H 0.167 0.833 38 H 0.200 0.800 39 H 0.194 0.806 40 H 0.230 0.770 41 H 0.197 0.803 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.224 0.776 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.146 7.218 4.598 17.397 hybrid contribution -1.177 -0.562 -0.526 1.406 sum 13.969 6.657 4.072 16.001 Atomic orbital electron populations 1.21551 0.93160 1.03086 1.01149 1.22664 0.97158 0.98456 0.95059 0.90107 1.22388 0.82202 0.98605 0.97465 1.48282 1.11929 1.65042 1.07574 1.17482 0.82881 0.77602 0.85659 1.90778 1.83705 1.53758 1.14182 1.20992 0.95987 1.07456 0.94739 1.23386 0.98435 0.89459 0.95888 1.21606 0.92229 1.05860 1.01022 1.18439 0.83889 0.94523 0.90088 1.43159 1.06181 1.51581 1.08478 1.22987 0.85199 1.07860 0.99362 1.22420 0.99964 1.07099 0.88115 1.70344 1.06781 1.18212 1.24159 1.25440 0.93550 1.04055 0.85471 1.67090 1.25865 1.16538 1.12081 1.22774 0.84542 0.88695 1.00794 1.23824 1.02307 1.01893 0.79138 1.21256 0.88014 0.90014 0.94882 0.90830 1.42479 1.45341 1.32623 1.14769 1.19241 1.19007 1.09580 0.90531 0.90858 1.24770 0.98736 0.98806 0.97930 1.69656 1.27095 1.27347 1.33161 0.86150 0.77388 0.79252 0.83509 1.20416 1.21796 1.21733 0.91133 0.93527 0.91976 0.90767 0.90923 0.79488 0.83257 0.80012 0.80631 0.76958 0.80329 0.91693 0.89351 0.77627 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.85 37.16 0.33 -1.52 16 2 C -0.11 -1.54 3.53 -88.35 -0.31 -1.85 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.69 6.34 -2.41 -0.02 1.68 16 5 N -0.60 -8.87 3.32 -172.49 -0.57 -9.45 16 6 C 0.58 8.90 7.81 -12.41 -0.10 8.81 16 7 O -0.54 -9.81 16.69 5.30 0.09 -9.73 16 8 C -0.19 -2.42 5.89 -104.81 -0.62 -3.04 16 9 C -0.05 -0.53 8.67 -38.91 -0.34 -0.86 16 10 C -0.19 -1.87 9.48 -39.32 -0.37 -2.24 16 11 C 0.36 4.15 7.50 -154.50 -1.16 2.99 16 12 N -0.41 -4.56 2.98 -63.80 -0.19 -4.75 16 13 C -0.02 -0.26 11.16 -16.43 -0.18 -0.44 16 14 C -0.03 -0.33 11.85 -17.82 -0.21 -0.54 16 15 N -0.48 -5.72 11.24 -14.45 -0.16 -5.88 16 16 C 0.20 2.01 11.89 -89.54 -1.06 0.95 16 17 N -0.50 -6.26 9.86 -11.99 -0.12 -6.38 16 18 C 0.19 2.37 10.76 -17.15 -0.18 2.18 16 19 C 0.05 0.75 4.61 -3.06 -0.01 0.74 16 20 C 0.17 2.71 3.37 -66.10 -0.22 2.48 16 21 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 22 N -0.71 -14.92 4.61 -51.66 -0.24 -15.16 16 23 C -0.25 -6.06 9.98 -15.06 -0.15 -6.21 16 24 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 26 N -0.93 -25.68 13.06 55.49 0.72 -24.96 16 27 Si 0.91 20.53 29.55 -169.99 -5.02 15.51 16 28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.07 1.17 6.38 -51.93 -0.33 0.84 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.22 7.99 -51.92 -0.41 0.80 16 35 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.19 2.03 2.92 -53.71 -0.16 1.88 16 37 H 0.15 1.06 6.73 -52.49 -0.35 0.70 16 38 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.21 1.40 7.02 -52.48 -0.37 1.03 16 41 H 0.18 2.02 7.67 -52.49 -0.40 1.62 16 42 H 0.07 0.73 6.67 -51.93 -0.35 0.38 16 43 H 0.09 1.38 6.70 -51.93 -0.35 1.03 16 44 H 0.39 8.92 6.10 -40.82 -0.25 8.67 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -31.18 370.87 -10.08 -41.26 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.47 Total: 11.05 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -4.71 Total: 2.90 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.56 Total: -66.58 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.18 -10.08 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.209 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds