Wall clock time and date at job start Sat Apr 11 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.88219 * 2 1 4 4 C 1.54908 * 111.03709 * 123.90077 * 2 1 3 5 5 N 1.47744 * 104.83947 * 155.18334 * 4 2 1 6 6 C 1.34780 * 125.81964 * 155.82998 * 5 4 2 7 7 O 1.21569 * 120.00526 * 354.29484 * 6 5 4 8 8 C 1.47669 * 119.99655 * 174.29343 * 6 5 4 9 9 C 1.40234 * 120.49541 * 6.91540 * 8 6 5 10 10 C 1.38024 * 118.35360 * 180.02562 * 9 8 6 11 11 C 1.39164 * 119.25535 * 359.97438 * 10 9 8 12 12 N 1.39486 * 119.52823 * 180.02562 * 11 10 9 13 13 C 1.37228 * 126.50112 * 184.71398 * 12 11 10 14 14 C 1.34588 * 106.82984 * 179.90429 * 13 12 11 15 15 N 1.34176 * 108.23131 * 0.36002 * 14 13 12 16 16 C 1.30450 * 109.38868 * 359.77191 * 15 14 13 17 17 N 1.32429 * 120.94020 * 0.02562 * 11 10 9 18 18 C 1.31634 * 121.80611 * 359.70004 * 17 11 10 19 19 C 1.47017 * 108.53290 * 335.75347 * 5 4 2 20 20 C 1.54326 * 107.39762 * 1.17910 * 19 5 4 21 21 H 1.08997 * 110.71912 * 263.56927 * 20 19 5 22 22 N 1.46503 * 110.72036 * 140.47856 * 20 19 5 23 23 C 1.36943 * 120.00153 * 86.45062 * 22 20 19 24 24 H 1.07999 * 119.99503 * 0.02562 * 23 22 20 25 25 C 1.38806 * 119.99924 * 180.02562 * 23 22 20 26 26 N 1.31625 * 120.00580 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99865 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47034 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47038 * 119.99799 * 27 25 23 30 30 H 1.48502 * 109.46890 * 240.00224 * 27 25 23 31 31 H 1.09005 * 109.46853 * 183.88163 * 1 2 3 32 32 H 1.09003 * 109.47086 * 303.87848 * 1 2 3 33 33 H 1.08997 * 109.47132 * 63.88464 * 1 2 3 34 34 H 1.08998 * 110.36818 * 273.94128 * 4 2 1 35 35 H 1.09005 * 110.36653 * 36.15277 * 4 2 1 36 36 H 1.07999 * 120.82176 * 359.97426 * 9 8 6 37 37 H 1.07997 * 120.36952 * 179.97438 * 10 9 8 38 38 H 1.08004 * 126.58475 * 0.03100 * 13 12 11 39 39 H 1.08002 * 125.88572 * 180.13492 * 14 13 12 40 40 H 1.08001 * 125.72921 * 179.97438 * 16 15 14 41 41 H 1.08003 * 119.68469 * 180.31315 * 18 17 11 42 42 H 1.08992 * 109.88614 * 241.68856 * 19 5 4 43 43 H 1.09004 * 109.88515 * 120.66755 * 19 5 4 44 44 H 0.97003 * 120.00161 * 266.45458 * 22 20 19 45 45 H 0.96995 * 120.00320 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0861 -0.8064 1.2000 5 7 3.4318 -1.2414 0.7726 6 6 4.4552 -1.5581 1.5905 7 8 4.3460 -1.3986 2.7907 8 6 5.7091 -2.0989 1.0286 9 6 5.9021 -2.1526 -0.3593 10 6 7.0907 -2.6671 -0.8365 11 6 8.0510 -3.1115 0.0674 12 7 9.2544 -3.6320 -0.4085 13 6 10.2566 -4.1906 0.3442 14 6 11.2267 -4.5611 -0.5119 15 7 10.8382 -4.2336 -1.7537 16 6 9.6595 -3.6767 -1.7060 17 7 7.8385 -3.0473 1.3730 18 6 6.7220 -2.5593 1.8710 19 6 3.4679 -1.2730 -0.6968 20 6 2.0861 -0.8075 -1.2024 21 1 1.4483 -1.6631 -1.4241 22 7 2.2277 0.0503 -2.3816 23 6 2.3024 -0.5084 -3.6297 24 1 2.2564 -1.5812 -3.7447 25 6 2.4371 0.3043 -4.7469 26 7 2.4936 1.6119 -4.6068 27 14 2.5382 -0.4577 -6.4495 28 1 2.4525 -1.9358 -6.3361 29 1 1.4148 0.0413 -7.2826 30 1 3.8283 -0.0843 -7.0831 31 1 -0.3633 -1.0254 0.0696 32 1 -0.3633 0.5729 0.8532 33 1 -0.3633 0.4523 -0.9227 34 1 2.1567 -0.1719 2.0835 35 1 1.4521 -1.6695 1.4035 36 1 5.1393 -1.8009 -1.0381 37 1 7.2734 -2.7241 -1.8993 38 1 10.2644 -4.3118 1.4174 39 1 12.1590 -5.0365 -0.2450 40 1 9.0995 -3.3119 -2.5544 41 1 6.5868 -2.5185 2.9418 42 1 3.6659 -2.2880 -1.0410 43 1 4.2428 -0.5996 -1.0632 44 1 2.2687 1.0139 -2.2784 45 1 2.5873 2.1798 -5.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:15 Heat of formation + Delta-G solvation = 114.372984 kcal Electronic energy + Delta-G solvation = -28942.904503 eV Core-core repulsion = 24963.244494 eV Total energy + Delta-G solvation = -3979.660009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63447 -40.90242 -39.47810 -37.71918 -34.62898 -34.29495 -33.48950 -32.29269 -30.93753 -30.50808 -29.59918 -27.91834 -26.72634 -25.01488 -24.21238 -23.92918 -22.15097 -21.24855 -21.19805 -20.20669 -20.03999 -18.98549 -17.41498 -17.30156 -16.70505 -16.09185 -15.94880 -15.73643 -15.44413 -14.93507 -14.52755 -14.30274 -14.19728 -14.11598 -13.88808 -13.73199 -13.70959 -13.38992 -13.18596 -12.78562 -12.69190 -12.52467 -12.09925 -11.72928 -11.27305 -11.10640 -11.02723 -10.81669 -10.75006 -10.44960 -10.43571 -10.34701 -10.28729 -10.07693 -9.92293 -9.81716 -9.13718 -9.12726 -8.79485 -8.55676 -7.25624 -5.99555 -3.31884 0.05205 0.81446 1.76961 2.10706 2.74573 2.85157 2.91552 3.29184 3.35619 3.38261 3.54821 3.87156 4.19000 4.28089 4.36045 4.41293 4.53917 4.57794 4.75606 4.90171 4.97639 5.05570 5.14514 5.22544 5.29151 5.37121 5.43806 5.48294 5.57373 5.62031 5.67021 5.69258 5.84172 5.87665 5.97127 5.99471 6.04746 6.16368 6.27595 6.31649 6.37864 6.46903 6.67320 6.79064 7.33246 7.48192 7.51970 7.67801 8.05573 8.17214 9.29817 9.81868 10.16544 11.21827 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008766 B = 0.003437 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.559136 B = 8144.983217 C =11089.382931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.578 3.422 7 O -0.545 6.545 8 C -0.190 4.190 9 C -0.046 4.046 10 C -0.183 4.183 11 C 0.360 3.640 12 N -0.412 5.412 13 C -0.026 4.026 14 C -0.031 4.031 15 N -0.478 5.478 16 C 0.198 3.802 17 N -0.505 5.505 18 C 0.192 3.808 19 C 0.055 3.945 20 C 0.176 3.824 21 H 0.070 0.930 22 N -0.711 5.711 23 C -0.255 4.255 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.925 5.925 27 Si 0.906 3.094 28 H -0.279 1.279 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.191 0.809 37 H 0.151 0.849 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.215 0.785 41 H 0.179 0.821 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -8.477 10.733 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.366 3.634 7 O -0.424 6.424 8 C -0.196 4.196 9 C -0.071 4.071 10 C -0.206 4.206 11 C 0.132 3.868 12 N -0.095 5.095 13 C -0.155 4.155 14 C -0.176 4.176 15 N -0.195 5.195 16 C -0.084 4.084 17 N -0.216 5.216 18 C 0.032 3.968 19 C -0.070 4.070 20 C 0.063 3.937 21 H 0.088 0.912 22 N -0.350 5.350 23 C -0.386 4.386 24 H 0.092 0.908 25 C -0.201 4.201 26 N -0.572 5.572 27 Si 0.737 3.263 28 H -0.204 1.204 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.208 0.792 37 H 0.169 0.831 38 H 0.200 0.800 39 H 0.194 0.806 40 H 0.231 0.769 41 H 0.196 0.804 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.223 0.777 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.369 -8.934 11.095 16.038 hybrid contribution -0.780 0.362 -0.843 1.204 sum 6.589 -8.572 10.253 14.900 Atomic orbital electron populations 1.21613 0.93616 1.01663 1.02275 1.22632 0.96529 0.99852 0.94310 0.89626 1.22394 0.81903 0.98425 0.98120 1.48435 1.12112 1.65261 1.07835 1.17514 0.82169 0.78105 0.85565 1.90770 1.82084 1.55211 1.14376 1.20972 0.97504 1.06422 0.94731 1.23473 0.97239 0.90518 0.95894 1.21651 0.94010 1.03770 1.01125 1.18450 0.85188 0.93117 0.90039 1.43166 1.13043 1.44490 1.08754 1.22973 0.89367 1.03805 0.99363 1.22423 1.00792 1.06100 0.88252 1.70349 1.10055 1.14958 1.24115 1.25482 0.94029 1.03256 0.85596 1.67091 1.23789 1.18611 1.12149 1.22762 0.85063 0.88195 1.00800 1.23872 1.04027 1.01063 0.78051 1.21299 0.91162 0.94116 0.87079 0.91215 1.42392 1.86828 1.05337 1.00490 1.19262 1.43865 0.91974 0.83486 0.90834 1.24776 1.01965 0.95328 0.98052 1.69662 1.55898 1.02339 1.29315 0.86155 0.77413 0.78290 0.84490 1.20394 1.21682 1.21675 0.92760 0.93031 0.91212 0.90483 0.91170 0.79226 0.83120 0.80038 0.80638 0.76879 0.80364 0.91274 0.89713 0.77750 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.31 37.16 0.35 -1.30 16 2 C -0.11 -1.55 3.25 -88.48 -0.29 -1.84 16 3 H 0.09 1.26 8.00 -51.93 -0.42 0.85 16 4 C 0.11 1.47 6.43 -2.35 -0.02 1.45 16 5 N -0.60 -8.42 3.34 -172.60 -0.58 -8.99 16 6 C 0.58 8.48 7.81 -12.41 -0.10 8.38 16 7 O -0.54 -9.23 16.63 5.30 0.09 -9.14 16 8 C -0.19 -2.44 5.89 -104.81 -0.62 -3.06 16 9 C -0.05 -0.54 8.68 -38.91 -0.34 -0.88 16 10 C -0.18 -1.98 9.48 -39.32 -0.37 -2.35 16 11 C 0.36 4.29 7.49 -154.51 -1.16 3.14 16 12 N -0.41 -4.74 2.98 -63.81 -0.19 -4.93 16 13 C -0.03 -0.28 11.16 -16.43 -0.18 -0.46 16 14 C -0.03 -0.34 11.85 -17.82 -0.21 -0.55 16 15 N -0.48 -5.97 11.24 -14.45 -0.16 -6.13 16 16 C 0.20 2.16 11.88 -89.54 -1.06 1.09 16 17 N -0.50 -6.29 9.87 -11.99 -0.12 -6.41 16 18 C 0.19 2.33 10.76 -17.15 -0.18 2.15 16 19 C 0.06 0.79 4.61 -3.07 -0.01 0.77 16 20 C 0.18 2.82 3.06 -66.10 -0.20 2.61 16 21 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 22 N -0.71 -14.87 5.18 -51.65 -0.27 -15.14 16 23 C -0.26 -6.08 9.98 -15.06 -0.15 -6.23 16 24 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 25 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 26 N -0.93 -25.31 13.06 55.49 0.72 -24.58 16 27 Si 0.91 20.26 29.55 -169.99 -5.02 15.24 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 30 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.00 8.00 -51.93 -0.42 0.59 16 35 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 36 H 0.19 2.26 2.90 -54.01 -0.16 2.10 16 37 H 0.15 1.25 6.75 -52.49 -0.35 0.90 16 38 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.21 1.61 7.05 -52.49 -0.37 1.24 16 41 H 0.18 1.95 7.67 -52.48 -0.40 1.55 16 42 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 43 H 0.09 1.29 6.62 -51.93 -0.34 0.95 16 44 H 0.39 8.88 7.71 -40.82 -0.31 8.57 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -30.33 374.35 -10.14 -40.47 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.61 Total: 11.25 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -4.64 Total: 2.74 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -0.59 Total: -66.19 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.33 -10.14 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.842 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds