Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.64405 * 2 1 4 4 C 1.54327 * 110.99924 * 236.91596 * 2 1 3 5 5 N 1.47027 * 107.26400 * 219.60580 * 4 2 1 6 6 C 1.34773 * 125.64851 * 178.85445 * 5 4 2 7 7 O 1.21580 * 119.99912 * 3.36951 * 6 5 4 8 8 C 1.47663 * 120.00286 * 183.37246 * 6 5 4 9 9 C 1.40237 * 120.49978 * 153.13528 * 8 6 5 10 10 C 1.38017 * 118.35779 * 179.77451 * 9 8 6 11 11 C 1.39156 * 119.25183 * 0.49230 * 10 9 8 12 12 N 1.39499 * 119.52458 * 179.76963 * 11 10 9 13 13 C 1.37231 * 126.49520 * 179.72699 * 12 11 10 14 14 C 1.34586 * 106.82345 * 180.02562 * 13 12 11 15 15 N 1.34176 * 108.23998 * 0.22636 * 14 13 12 16 16 C 1.30458 * 109.38158 * 359.62004 * 15 14 13 17 17 N 1.32430 * 120.94642 * 359.49785 * 11 10 9 18 18 C 1.31633 * 121.80024 * 0.24999 * 17 11 10 19 19 C 1.47422 * 108.70509 * 358.58417 * 5 4 2 20 20 C 1.54910 * 104.83134 * 24.36031 * 19 5 4 21 21 H 1.09006 * 111.00746 * 204.92028 * 20 19 5 22 22 N 1.46500 * 111.00915 * 81.10108 * 20 19 5 23 23 C 1.36931 * 119.99761 * 86.44906 * 22 20 19 24 24 H 1.07997 * 120.00119 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99830 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00144 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99937 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47012 * 89.99731 * 27 25 23 29 29 H 1.48493 * 109.46914 * 209.99474 * 27 25 23 30 30 H 1.48500 * 109.46833 * 329.99516 * 27 25 23 31 31 H 1.09005 * 109.47106 * 296.86538 * 1 2 3 32 32 H 1.08998 * 109.47023 * 56.85879 * 1 2 3 33 33 H 1.08991 * 109.47571 * 176.86612 * 1 2 3 34 34 H 1.09002 * 109.99305 * 100.13323 * 4 2 1 35 35 H 1.08994 * 109.78430 * 338.95674 * 4 2 1 36 36 H 1.08001 * 120.81980 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.37493 * 180.24630 * 10 9 8 38 38 H 1.08001 * 126.58873 * 0.02562 * 13 12 11 39 39 H 1.08005 * 125.88258 * 179.97438 * 14 13 12 40 40 H 1.07997 * 125.72825 * 180.14719 * 16 15 14 41 41 H 1.08003 * 119.67934 * 179.97438 * 18 17 11 42 42 H 1.08996 * 110.36917 * 143.19633 * 19 5 4 43 43 H 1.09004 * 110.36972 * 265.52253 * 19 5 4 44 44 H 0.97000 * 119.99998 * 266.46383 * 22 20 19 45 45 H 0.96997 * 120.00043 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7865 -1.2072 5 7 3.2493 -1.5472 -0.7351 6 6 4.0003 -2.3787 -1.4841 7 8 3.7701 -2.5025 -2.6714 8 6 5.1027 -3.1396 -0.8626 9 6 5.5188 -4.3630 -1.4073 10 6 6.5565 -5.0348 -0.7936 11 6 7.1444 -4.4861 0.3421 12 7 8.1905 -5.1627 0.9698 13 6 8.8731 -4.7531 2.0876 14 6 9.7948 -5.6982 2.3493 15 7 9.6875 -6.6586 1.4185 16 6 8.7276 -6.3529 0.5897 17 7 6.7286 -3.3284 0.8325 18 6 5.7458 -2.6522 0.2759 19 6 3.4652 -1.2447 0.6915 20 6 2.0789 -0.7934 1.2153 21 1 2.1820 -0.1488 2.0883 22 7 1.2296 -1.9485 1.5163 23 6 1.3007 -2.5489 2.7449 24 1 1.9825 -2.1707 3.4921 25 6 0.4963 -3.6438 3.0299 26 7 0.5642 -4.2206 4.2110 27 14 -0.6826 -4.2984 1.7371 28 1 0.0038 -5.3296 0.9182 29 1 -1.8637 -4.9020 2.4047 30 1 -1.1248 -3.1840 0.8609 31 1 -0.3633 0.4644 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3634 -1.0260 -0.0562 34 1 2.3849 -0.0963 -1.9950 35 1 1.3217 -1.4703 -1.5821 36 1 5.0416 -4.7676 -2.2877 37 1 6.9057 -5.9777 -1.1879 38 1 8.7032 -3.8465 2.6495 39 1 10.5022 -5.6839 3.1654 40 1 8.4146 -6.9437 -0.2585 41 1 5.4340 -1.7113 0.7048 42 1 3.7992 -2.1364 1.2220 43 1 4.1929 -0.4410 0.8031 44 1 0.6171 -2.2881 0.8452 45 1 0.0024 -4.9859 4.4100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = 110.599049 kcal Electronic energy + Delta-G solvation = -29501.563178 eV Core-core repulsion = 25521.739519 eV Total energy + Delta-G solvation = -3979.823659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.57169 -40.85013 -39.50366 -37.81165 -34.59288 -34.13692 -32.99391 -32.68801 -31.07152 -30.44848 -29.56358 -28.44312 -26.58770 -24.96637 -24.15597 -23.71868 -22.33601 -21.37148 -21.08558 -19.93664 -19.59801 -19.00477 -18.04916 -17.38598 -16.73519 -16.27525 -15.91731 -15.51239 -15.39357 -14.88398 -14.41405 -14.29841 -14.21880 -14.09405 -13.99047 -13.74050 -13.55896 -13.28085 -13.02105 -12.89278 -12.83046 -12.43290 -12.21200 -11.88001 -11.61178 -11.13856 -10.99938 -10.88725 -10.69562 -10.42826 -10.40756 -10.35205 -10.28127 -10.15797 -9.76324 -9.70440 -9.18852 -9.04423 -8.71410 -8.53077 -7.45327 -5.92744 -3.30276 0.13539 0.84751 1.84932 2.16929 2.74491 2.89179 2.99610 3.24446 3.28579 3.35225 3.56853 3.90132 4.20405 4.32928 4.40239 4.44459 4.51368 4.58117 4.74924 4.87228 4.92841 4.98482 5.12999 5.19089 5.22601 5.35389 5.41755 5.46996 5.53887 5.62614 5.64496 5.70378 5.79120 5.89688 5.92317 6.01161 6.05389 6.09276 6.20227 6.31252 6.44287 6.47323 6.56029 6.84465 7.40749 7.53171 7.72924 7.80926 8.10720 8.25878 9.02578 9.75089 9.92892 11.24702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003570 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.614377 B = 7840.614808 C = 9181.183444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.579 3.421 7 O -0.545 6.545 8 C -0.185 4.185 9 C 0.009 3.991 10 C -0.188 4.188 11 C 0.363 3.637 12 N -0.411 5.411 13 C -0.020 4.020 14 C -0.032 4.032 15 N -0.478 5.478 16 C 0.193 3.807 17 N -0.497 5.497 18 C 0.164 3.836 19 C 0.052 3.948 20 C 0.179 3.821 21 H 0.083 0.917 22 N -0.733 5.733 23 C -0.254 4.254 24 H 0.093 0.907 25 C 0.014 3.986 26 N -0.926 5.926 27 Si 0.878 3.122 28 H -0.285 1.285 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.184 0.816 39 H 0.177 0.823 40 H 0.212 0.788 41 H 0.185 0.815 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.531 4.965 -9.869 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 H 0.106 0.894 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.367 3.633 7 O -0.424 6.424 8 C -0.191 4.191 9 C -0.018 4.018 10 C -0.210 4.210 11 C 0.135 3.865 12 N -0.094 5.094 13 C -0.149 4.149 14 C -0.177 4.177 15 N -0.195 5.195 16 C -0.088 4.088 17 N -0.209 5.209 18 C 0.005 3.995 19 C -0.074 4.074 20 C 0.067 3.933 21 H 0.101 0.899 22 N -0.375 5.375 23 C -0.383 4.383 24 H 0.111 0.889 25 C -0.183 4.183 26 N -0.573 5.573 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.202 1.202 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.202 0.798 39 H 0.194 0.806 40 H 0.229 0.771 41 H 0.202 0.798 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.199 0.801 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.343 4.427 -9.563 16.229 hybrid contribution -1.779 -0.320 -1.362 2.263 sum 10.564 4.107 -10.925 15.742 Atomic orbital electron populations 1.21643 0.93531 1.02471 1.01631 1.22554 0.97044 0.99080 0.94852 0.89435 1.22024 0.87382 0.94457 0.96823 1.48239 1.29431 1.43275 1.11848 1.17465 0.81357 0.78907 0.85589 1.90775 1.70842 1.66061 1.14717 1.20926 1.00588 0.98327 0.99264 1.21523 0.91751 0.91241 0.97259 1.21471 0.99623 1.03076 0.96851 1.18373 0.87996 0.90105 0.90071 1.43134 1.25344 1.18129 1.22767 1.23026 0.97089 1.03307 0.91503 1.22415 1.02017 0.92168 1.01061 1.70327 1.16856 1.27402 1.04912 1.25365 0.94622 0.86463 1.02360 1.67068 1.15226 1.06422 1.32137 1.23551 0.87844 0.98717 0.89382 1.23829 1.01869 1.01207 0.80466 1.21327 0.87933 0.89299 0.94778 0.89908 1.42727 1.45958 1.33946 1.14914 1.19023 1.20088 1.09362 0.89849 0.88905 1.24643 0.99336 0.98072 0.96263 1.69685 1.42629 1.24337 1.20614 0.86681 0.81681 0.79099 0.81750 1.21144 1.21485 1.20190 0.91551 0.93165 0.92126 0.91505 0.91468 0.82643 0.83293 0.79849 0.80574 0.77141 0.79848 0.88993 0.91360 0.80133 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.73 37.16 0.32 -1.45 16 2 C -0.12 -1.46 3.40 -88.78 -0.30 -1.77 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.12 1.58 6.48 -3.06 -0.02 1.56 16 5 N -0.60 -8.82 3.33 -171.70 -0.57 -9.39 16 6 C 0.58 9.13 7.65 -12.41 -0.10 9.03 16 7 O -0.54 -9.87 17.04 5.30 0.09 -9.77 16 8 C -0.19 -2.58 5.72 -104.81 -0.60 -3.18 16 9 C 0.01 0.11 9.71 -38.91 -0.38 -0.27 16 10 C -0.19 -2.01 9.48 -39.32 -0.37 -2.39 16 11 C 0.36 4.62 7.50 -154.50 -1.16 3.46 16 12 N -0.41 -5.02 2.98 -63.80 -0.19 -5.21 16 13 C -0.02 -0.24 11.16 -16.43 -0.18 -0.42 16 14 C -0.03 -0.37 11.85 -17.82 -0.21 -0.58 16 15 N -0.48 -6.11 11.24 -14.45 -0.16 -6.28 16 16 C 0.19 2.13 11.89 -89.53 -1.06 1.06 16 17 N -0.50 -6.83 9.86 -11.99 -0.12 -6.95 16 18 C 0.16 2.16 9.12 -17.15 -0.16 2.01 16 19 C 0.05 0.73 4.71 -2.53 -0.01 0.72 16 20 C 0.18 2.80 3.44 -65.78 -0.23 2.58 16 21 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 22 N -0.73 -15.21 4.55 -51.34 -0.23 -15.44 16 23 C -0.25 -6.48 10.47 -15.06 -0.16 -6.64 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 26 N -0.93 -27.77 13.97 55.49 0.78 -26.99 16 27 Si 0.88 21.21 27.74 -169.99 -4.71 16.50 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.94 6.37 -51.93 -0.33 0.61 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16 36 H 0.16 1.66 7.94 -52.49 -0.42 1.24 16 37 H 0.15 1.06 6.73 -52.49 -0.35 0.71 16 38 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.21 1.46 7.02 -52.49 -0.37 1.09 16 41 H 0.19 2.14 4.54 -52.48 -0.24 1.90 16 42 H 0.09 1.49 6.14 -51.93 -0.32 1.17 16 43 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 44 H 0.36 7.73 3.95 -40.82 -0.16 7.57 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -33.85 369.21 -9.79 -43.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.52 Total: 10.32 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -4.71 Total: 4.01 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -0.50 Total: -70.26 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.85 -9.79 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.243 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds