Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.63831 * 2 1 4 4 C 1.54320 * 110.71899 * 236.65858 * 2 1 3 5 5 N 1.47027 * 107.26935 * 219.44276 * 4 2 1 6 6 C 1.34772 * 125.64906 * 178.96007 * 5 4 2 7 7 O 1.21577 * 119.99940 * 354.17427 * 6 5 4 8 8 C 1.47667 * 120.00095 * 174.16626 * 6 5 4 9 9 C 1.40229 * 120.49738 * 155.66241 * 8 6 5 10 10 C 1.38018 * 118.35604 * 180.02562 * 9 8 6 11 11 C 1.39149 * 119.25687 * 359.97438 * 10 9 8 12 12 N 1.39494 * 119.52819 * 180.02562 * 11 10 9 13 13 C 1.37233 * 126.49481 * 184.71896 * 12 11 10 14 14 C 1.34594 * 106.82336 * 179.84310 * 13 12 11 15 15 N 1.34184 * 108.23437 * 0.41650 * 14 13 12 16 16 C 1.30453 * 109.38235 * 359.73696 * 15 14 13 17 17 N 1.32432 * 120.94514 * 359.97438 * 11 10 9 18 18 C 1.31640 * 121.79811 * 359.74014 * 17 11 10 19 19 C 1.47430 * 108.70281 * 358.94427 * 5 4 2 20 20 C 1.54913 * 104.83226 * 24.12909 * 19 5 4 21 21 H 1.08999 * 111.04128 * 81.07448 * 20 19 5 22 22 N 1.46502 * 111.00476 * 204.91602 * 20 19 5 23 23 C 1.36933 * 119.99860 * 267.19575 * 22 20 19 24 24 H 1.07999 * 120.00333 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99802 * 179.97438 * 23 22 20 26 26 N 1.31625 * 120.00312 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 180.27422 * 25 23 22 28 28 H 1.48496 * 109.47431 * 179.73058 * 27 25 23 29 29 H 1.48504 * 109.46980 * 299.72450 * 27 25 23 30 30 H 1.48494 * 109.47299 * 59.72490 * 27 25 23 31 31 H 1.08997 * 109.47358 * 296.86562 * 1 2 3 32 32 H 1.09003 * 109.46578 * 56.86346 * 1 2 3 33 33 H 1.09000 * 109.47060 * 176.85745 * 1 2 3 34 34 H 1.08993 * 109.88563 * 338.85792 * 4 2 1 35 35 H 1.08995 * 109.87956 * 99.87777 * 4 2 1 36 36 H 1.08003 * 120.81824 * 0.02562 * 9 8 6 37 37 H 1.08006 * 120.36977 * 179.97438 * 10 9 8 38 38 H 1.07999 * 126.58793 * 359.95743 * 13 12 11 39 39 H 1.07995 * 125.88152 * 180.15589 * 14 13 12 40 40 H 1.08006 * 125.72323 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.68363 * 180.27260 * 18 17 11 42 42 H 1.08998 * 110.36686 * 265.28808 * 19 5 4 43 43 H 1.08998 * 110.36632 * 142.96340 * 19 5 4 44 44 H 0.97006 * 119.99580 * 87.18782 * 22 20 19 45 45 H 0.96998 * 120.00444 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2446 -1.5520 -0.7362 6 6 3.9922 -2.3865 -1.4853 7 8 3.6579 -2.6442 -2.6254 8 6 5.2174 -2.9876 -0.9213 9 6 5.7196 -4.1926 -1.4334 10 6 6.8674 -4.7152 -0.8728 11 6 7.4842 -4.0351 0.1728 12 7 8.6449 -4.5580 0.7432 13 6 9.3157 -4.0592 1.8315 14 6 10.3717 -4.8667 2.0419 15 7 10.3578 -5.8284 1.1063 16 6 9.3294 -5.6552 0.3226 17 7 6.9856 -2.8981 0.6336 18 6 5.8965 -2.3615 0.1247 19 6 3.4633 -1.2485 0.6899 20 6 2.0789 -0.7933 1.2153 21 1 1.4447 -1.6507 1.4409 22 7 2.2213 0.0738 2.3875 23 6 2.1866 -0.4650 3.6459 24 1 2.0546 -1.5291 3.7743 25 6 2.3220 0.3566 4.7565 26 7 2.4834 1.6535 4.6001 27 14 2.2823 -0.3792 6.4731 28 1 2.4533 0.7001 7.4785 29 1 0.9790 -1.0568 6.6911 30 1 3.3829 -1.3661 6.6142 31 1 -0.3634 0.4644 0.9167 32 1 -0.3632 0.5618 -0.8606 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3131 -1.4786 -1.5749 35 1 2.3716 -0.1061 -1.9985 36 1 5.2205 -4.6991 -2.2462 37 1 7.2823 -5.6417 -1.2417 38 1 9.0467 -3.1874 2.4094 39 1 11.1062 -4.7568 2.8260 40 1 9.0661 -6.2784 -0.5193 41 1 5.5221 -1.4305 0.5240 42 1 4.1931 -0.4464 0.7994 43 1 3.7960 -2.1404 1.2208 44 1 2.3403 1.0296 2.2721 45 1 2.5777 2.2277 5.3762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054950407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 100.901349 kcal Electronic energy + Delta-G solvation = -28912.974190 eV Core-core repulsion = 24932.730008 eV Total energy + Delta-G solvation = -3980.244183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64632 -40.88738 -39.48300 -37.70799 -34.63897 -34.22637 -33.07728 -32.72561 -30.95996 -30.48418 -29.62005 -27.81108 -26.58864 -24.97063 -24.19957 -23.97146 -22.10933 -21.35932 -21.12567 -20.21996 -19.80507 -19.07738 -17.52226 -17.35322 -16.77826 -16.26921 -15.96050 -15.63447 -15.50057 -14.72319 -14.47070 -14.25479 -14.15702 -14.07346 -13.81136 -13.75655 -13.55789 -13.33744 -13.14244 -13.05685 -12.84117 -12.64486 -12.01912 -11.74893 -11.21442 -11.12617 -11.03192 -10.80288 -10.73378 -10.47799 -10.43703 -10.39844 -10.34673 -10.09532 -9.88569 -9.78537 -9.14808 -9.10292 -8.79339 -8.56092 -7.20503 -5.94685 -3.26432 0.03601 0.75574 1.76701 2.09322 2.69775 2.82687 2.91189 3.34245 3.39852 3.40333 3.47596 3.84636 4.11652 4.26783 4.33491 4.44112 4.45736 4.51120 4.80003 4.89232 4.96305 5.09415 5.10673 5.16232 5.29997 5.41754 5.46590 5.49890 5.55928 5.59657 5.70189 5.76756 5.84085 5.88576 5.96447 6.06547 6.07630 6.20097 6.30838 6.33527 6.37800 6.51473 6.70842 6.77158 7.34664 7.49323 7.54324 7.65748 8.04093 8.22289 9.34815 9.86083 10.21088 11.26710 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.003463 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.241736 B = 8082.462235 C =10985.692414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.577 3.423 7 O -0.544 6.544 8 C -0.190 4.190 9 C 0.008 3.992 10 C -0.191 4.191 11 C 0.363 3.637 12 N -0.413 5.413 13 C -0.019 4.019 14 C -0.032 4.032 15 N -0.478 5.478 16 C 0.192 3.808 17 N -0.496 5.496 18 C 0.167 3.833 19 C 0.060 3.940 20 C 0.179 3.821 21 H 0.071 0.929 22 N -0.707 5.707 23 C -0.254 4.254 24 H 0.072 0.928 25 C -0.003 4.003 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.185 0.815 39 H 0.178 0.822 40 H 0.212 0.788 41 H 0.187 0.813 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.388 0.612 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -9.649 -11.852 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.337 5.337 6 C 0.365 3.635 7 O -0.423 6.423 8 C -0.196 4.196 9 C -0.018 4.018 10 C -0.213 4.213 11 C 0.134 3.866 12 N -0.095 5.095 13 C -0.148 4.148 14 C -0.176 4.176 15 N -0.194 5.194 16 C -0.089 4.089 17 N -0.207 5.207 18 C 0.008 3.992 19 C -0.066 4.066 20 C 0.066 3.934 21 H 0.089 0.911 22 N -0.346 5.346 23 C -0.385 4.385 24 H 0.090 0.910 25 C -0.200 4.200 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.215 1.215 29 H -0.211 1.211 30 H -0.211 1.211 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.174 0.826 37 H 0.167 0.833 38 H 0.203 0.797 39 H 0.195 0.805 40 H 0.229 0.771 41 H 0.203 0.797 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.611 -10.071 -11.660 17.185 hybrid contribution -0.803 0.255 0.502 0.981 sum 6.808 -9.816 -11.158 16.346 Atomic orbital electron populations 1.21663 0.93752 1.01603 1.02170 1.22553 0.96709 0.99860 0.94417 0.89565 1.22041 0.87142 0.94297 0.97065 1.48393 1.29674 1.43297 1.12356 1.17501 0.82428 0.78686 0.84930 1.90776 1.71763 1.61622 1.18138 1.20986 0.99192 0.98750 1.00683 1.21542 0.92149 0.92248 0.95894 1.21483 0.98272 1.02883 0.98637 1.18426 0.86459 0.90787 0.90898 1.43151 1.19038 1.23101 1.24233 1.23081 0.95929 1.03243 0.92590 1.22433 0.99998 0.94093 1.01101 1.70330 1.18801 1.24656 1.05656 1.25364 0.90898 0.90300 1.02380 1.67135 1.13852 1.09914 1.29847 1.23652 0.87492 0.98773 0.89266 1.23906 1.03410 1.00644 0.78611 1.21366 0.91350 0.93906 0.86827 0.91115 1.42289 1.86044 1.06236 1.00080 1.19173 1.43558 0.92683 0.83047 0.91044 1.24749 1.01886 0.95397 0.97996 1.69639 1.55411 1.02683 1.29660 0.86287 0.77972 0.77888 0.84135 1.21549 1.21102 1.21081 0.91210 0.93131 0.92876 0.91230 0.91598 0.82559 0.83300 0.79742 0.80525 0.77126 0.79667 0.90581 0.90812 0.77753 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.16 37.16 0.34 -1.40 16 2 C -0.12 -1.61 3.20 -88.78 -0.28 -1.90 16 3 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 4 C 0.12 1.55 6.47 -3.06 -0.02 1.53 16 5 N -0.61 -8.53 3.33 -171.70 -0.57 -9.10 16 6 C 0.58 8.35 7.65 -12.41 -0.09 8.26 16 7 O -0.54 -9.13 17.00 5.30 0.09 -9.04 16 8 C -0.19 -2.38 5.68 -104.81 -0.60 -2.98 16 9 C 0.01 0.08 9.71 -38.91 -0.38 -0.29 16 10 C -0.19 -1.73 9.48 -39.32 -0.37 -2.11 16 11 C 0.36 4.21 7.49 -154.51 -1.16 3.05 16 12 N -0.41 -4.66 2.98 -63.81 -0.19 -4.85 16 13 C -0.02 -0.22 11.16 -16.42 -0.18 -0.40 16 14 C -0.03 -0.35 11.85 -17.81 -0.21 -0.56 16 15 N -0.48 -5.72 11.24 -14.45 -0.16 -5.88 16 16 C 0.19 1.91 11.88 -89.54 -1.06 0.84 16 17 N -0.50 -6.58 9.87 -11.99 -0.12 -6.70 16 18 C 0.17 2.14 9.26 -17.15 -0.16 1.98 16 19 C 0.06 0.90 4.69 -2.52 -0.01 0.89 16 20 C 0.18 3.02 3.16 -65.78 -0.21 2.81 16 21 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 22 N -0.71 -15.36 5.24 -51.35 -0.27 -15.63 16 23 C -0.25 -6.34 9.96 -15.06 -0.15 -6.49 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 26 N -0.93 -25.88 13.06 55.49 0.72 -25.16 16 27 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 34 H 0.07 0.90 7.76 -51.93 -0.40 0.50 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.16 1.35 7.91 -52.48 -0.42 0.93 16 37 H 0.15 0.82 6.75 -52.48 -0.35 0.47 16 38 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.21 1.20 7.05 -52.48 -0.37 0.83 16 41 H 0.19 2.37 4.62 -52.49 -0.24 2.13 16 42 H 0.08 1.15 6.84 -51.93 -0.36 0.80 16 43 H 0.07 1.12 6.85 -51.93 -0.36 0.76 16 44 H 0.39 9.03 7.76 -40.82 -0.32 8.71 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -31.30 376.17 -10.22 -41.52 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.72 Total: 10.11 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -4.64 Total: 3.05 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.59 Total: -67.32 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.30 -10.22 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054950407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.420 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds