Wall clock time and date at job start Sat Apr 11 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.63879 * 2 1 4 4 C 1.54325 * 110.72367 * 236.66049 * 2 1 3 5 5 N 1.47019 * 107.27129 * 219.44230 * 4 2 1 6 6 C 1.34772 * 125.64831 * 178.95890 * 5 4 2 7 7 O 1.21577 * 119.99940 * 354.17179 * 6 5 4 8 8 C 1.47667 * 120.00095 * 174.16377 * 6 5 4 9 9 C 1.40229 * 120.49738 * 155.66241 * 8 6 5 10 10 C 1.38030 * 118.35727 * 179.97438 * 9 8 6 11 11 C 1.39154 * 119.25415 * 0.02562 * 10 9 8 12 12 N 1.39494 * 119.52866 * 180.02562 * 11 10 9 13 13 C 1.35914 * 126.10752 * 179.97438 * 12 11 10 14 14 C 1.35239 * 107.60878 * 179.97438 * 13 12 11 15 15 C 1.39997 * 107.97168 * 0.02562 * 14 13 12 16 16 N 1.30803 * 108.37496 * 359.75431 * 15 14 13 17 17 N 1.32444 * 120.94385 * 359.97438 * 11 10 9 18 18 C 1.31629 * 121.80250 * 359.76880 * 17 11 10 19 19 C 1.47430 * 108.70356 * 358.94096 * 5 4 2 20 20 C 1.54914 * 104.83256 * 24.12746 * 19 5 4 21 21 H 1.08994 * 111.03340 * 81.07730 * 20 19 5 22 22 N 1.46493 * 111.00260 * 204.91779 * 20 19 5 23 23 C 1.36937 * 120.00220 * 267.19616 * 22 20 19 24 24 H 1.08009 * 119.99763 * 359.97438 * 23 22 20 25 25 C 1.38807 * 120.00380 * 180.02562 * 23 22 20 26 26 N 1.31615 * 119.99856 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00113 * 180.27425 * 25 23 22 28 28 H 1.48496 * 109.47423 * 179.72172 * 27 25 23 29 29 H 1.48501 * 109.47210 * 299.72486 * 27 25 23 30 30 H 1.48502 * 109.47183 * 59.72222 * 27 25 23 31 31 H 1.08997 * 109.47458 * 296.86347 * 1 2 3 32 32 H 1.09006 * 109.47291 * 56.86267 * 1 2 3 33 33 H 1.09000 * 109.47247 * 176.86238 * 1 2 3 34 34 H 1.08992 * 109.87807 * 338.86152 * 4 2 1 35 35 H 1.09002 * 109.88317 * 99.87097 * 4 2 1 36 36 H 1.07995 * 120.82133 * 359.95720 * 9 8 6 37 37 H 1.07998 * 120.37137 * 179.97438 * 10 9 8 38 38 H 1.07999 * 126.19614 * 359.97438 * 13 12 11 39 39 H 1.08004 * 126.01874 * 179.97438 * 14 13 12 40 40 H 1.07999 * 125.81562 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.68524 * 180.26619 * 18 17 11 42 42 H 1.08998 * 110.36686 * 265.29022 * 19 5 4 43 43 H 1.08998 * 110.36632 * 142.96554 * 19 5 4 44 44 H 0.97006 * 120.00386 * 87.19945 * 22 20 19 45 45 H 0.97007 * 119.99695 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2445 -1.5519 -0.7362 6 6 3.9922 -2.3863 -1.4854 7 8 3.6579 -2.6440 -2.6255 8 6 5.2175 -2.9873 -0.9214 9 6 5.7197 -4.1923 -1.4335 10 6 6.8683 -4.7144 -0.8736 11 6 7.4850 -4.0343 0.1720 12 7 8.6463 -4.5564 0.7417 13 6 9.3549 -4.0064 1.7628 14 6 10.4060 -4.8189 2.0157 15 6 10.3422 -5.8975 1.1255 16 7 9.2878 -5.7441 0.3667 17 7 6.9856 -2.8977 0.6335 18 6 5.8957 -2.3621 0.1258 19 6 3.4633 -1.2485 0.6898 20 6 2.0789 -0.7932 1.2153 21 1 1.4448 -1.6506 1.4408 22 7 2.2213 0.0739 2.3874 23 6 2.1866 -0.4648 3.6459 24 1 2.0538 -1.5290 3.7743 25 6 2.3211 0.3569 4.7565 26 7 2.4824 1.6537 4.6000 27 14 2.2814 -0.3790 6.4730 28 1 2.4514 0.7005 7.4785 29 1 0.9786 -1.0576 6.6908 30 1 3.3828 -1.3650 6.6145 31 1 -0.3634 0.4643 0.9167 32 1 -0.3634 0.5618 -0.8606 33 1 -0.3634 -1.0261 -0.0562 34 1 1.3130 -1.4785 -1.5749 35 1 2.3716 -0.1060 -1.9986 36 1 5.2201 -4.6994 -2.2456 37 1 7.2832 -5.6408 -1.2425 38 1 9.1209 -3.0869 2.2788 39 1 11.1621 -4.6628 2.7709 40 1 11.0417 -6.7189 1.0767 41 1 5.5208 -1.4316 0.5257 42 1 4.1931 -0.4463 0.7994 43 1 3.7960 -2.1403 1.2208 44 1 2.3402 1.0297 2.2721 45 1 2.5760 2.2279 5.3763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054955962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:32 Heat of formation + Delta-G solvation = 116.864333 kcal Electronic energy + Delta-G solvation = -28873.159758 eV Core-core repulsion = 24893.607782 eV Total energy + Delta-G solvation = -3979.551976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83083 -40.69890 -39.35644 -37.63455 -34.28064 -33.95246 -32.90697 -32.53208 -30.88786 -30.61950 -29.80834 -27.75939 -26.50454 -24.79080 -24.16445 -23.85828 -22.01146 -21.23219 -21.03316 -20.14832 -19.73075 -18.63733 -17.43475 -17.31543 -16.63075 -16.17194 -15.75237 -15.53940 -15.44736 -14.65462 -14.54112 -14.28810 -13.95555 -13.74489 -13.66922 -13.48100 -13.37415 -13.10423 -13.04327 -12.97063 -12.77753 -12.58654 -11.96306 -11.70245 -11.20151 -11.17671 -11.06585 -10.81522 -10.71309 -10.65636 -10.34513 -10.30440 -10.22256 -10.05649 -9.83973 -9.70555 -9.45165 -9.08864 -8.62140 -8.45416 -7.17558 -5.92320 -3.23739 0.14142 0.91719 1.66526 1.83377 2.48208 2.79247 2.99312 3.35821 3.41443 3.41633 3.60199 3.95389 4.20520 4.35408 4.49170 4.57790 4.64208 4.73904 4.84474 4.94468 5.02014 5.13011 5.15141 5.37609 5.39047 5.46117 5.54527 5.59742 5.64256 5.66893 5.73076 5.74346 5.83165 5.93122 6.06702 6.10967 6.12170 6.23212 6.25726 6.34856 6.39649 6.54959 6.74927 6.76841 7.06661 7.55135 7.57626 7.59577 8.12709 8.24904 9.37288 9.88968 10.24048 11.29162 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.003454 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.272279 B = 8105.226749 C =10994.315916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.578 3.422 7 O -0.545 6.545 8 C -0.195 4.195 9 C 0.004 3.996 10 C -0.176 4.176 11 C 0.387 3.613 12 N -0.328 5.328 13 C 0.084 3.916 14 C -0.266 4.266 15 C 0.066 3.934 16 N -0.286 5.286 17 N -0.506 5.506 18 C 0.167 3.833 19 C 0.061 3.939 20 C 0.178 3.822 21 H 0.071 0.929 22 N -0.707 5.707 23 C -0.253 4.253 24 H 0.072 0.928 25 C -0.004 4.004 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.285 1.285 30 H -0.284 1.284 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.186 0.814 39 H 0.158 0.842 40 H 0.194 0.806 41 H 0.187 0.813 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -10.040 -9.772 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.366 3.634 7 O -0.424 6.424 8 C -0.201 4.201 9 C -0.023 4.023 10 C -0.198 4.198 11 C 0.160 3.840 12 N -0.106 5.106 13 C -0.057 4.057 14 C -0.295 4.295 15 C -0.123 4.123 16 N -0.105 5.105 17 N -0.219 5.219 18 C 0.008 3.992 19 C -0.065 4.065 20 C 0.065 3.935 21 H 0.089 0.911 22 N -0.347 5.347 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.201 4.201 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.211 1.211 30 H -0.211 1.211 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.203 0.797 39 H 0.175 0.825 40 H 0.210 0.790 41 H 0.203 0.797 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.368 -10.314 -10.495 17.444 hybrid contribution 0.349 -0.078 1.155 1.209 sum 9.716 -10.392 -9.341 17.019 Atomic orbital electron populations 1.21661 0.93795 1.01591 1.02132 1.22549 0.96668 0.99851 0.94458 0.89586 1.22029 0.87197 0.94288 0.97023 1.48382 1.29696 1.43417 1.12332 1.17518 0.82415 0.78568 0.84891 1.90769 1.71813 1.61629 1.18188 1.20934 0.99269 0.98916 1.00970 1.21572 0.92357 0.92306 0.96059 1.21525 0.97383 1.02981 0.97895 1.17934 0.85159 0.90296 0.90643 1.45774 1.19367 1.18199 1.27222 1.23060 0.92141 1.00014 0.90462 1.21706 1.03137 0.97808 1.06799 1.24195 0.95414 0.99231 0.93477 1.77446 1.09851 0.99256 1.23926 1.66987 1.14257 1.10259 1.30357 1.23555 0.87468 0.98693 0.89471 1.23887 1.03279 1.00656 0.78683 1.21368 0.91413 0.93882 0.86806 0.91134 1.42286 1.86065 1.06235 1.00084 1.19183 1.43399 0.92683 0.83061 0.91047 1.24745 1.01977 0.95399 0.97972 1.69642 1.55528 1.02672 1.29604 0.86287 0.77964 0.77863 0.84167 1.21576 1.21123 1.21098 0.91237 0.93152 0.92885 0.91288 0.91650 0.82792 0.82887 0.79684 0.82473 0.78952 0.79697 0.90607 0.90781 0.77766 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.16 37.16 0.34 -1.45 16 2 C -0.12 -1.66 3.20 -88.79 -0.28 -1.95 16 3 H 0.09 1.26 8.00 -51.93 -0.42 0.85 16 4 C 0.12 1.62 6.47 -3.07 -0.02 1.60 16 5 N -0.61 -8.96 3.33 -171.70 -0.57 -9.53 16 6 C 0.58 8.92 7.65 -12.41 -0.09 8.83 16 7 O -0.54 -9.68 17.00 5.30 0.09 -9.59 16 8 C -0.19 -2.69 5.68 -104.81 -0.60 -3.28 16 9 C 0.00 0.04 9.71 -38.91 -0.38 -0.33 16 10 C -0.18 -2.13 9.68 -39.32 -0.38 -2.51 16 11 C 0.39 5.28 7.55 -154.49 -1.17 4.11 16 12 N -0.33 -4.26 3.80 -12.10 -0.05 -4.30 16 13 C 0.08 0.94 11.09 -16.81 -0.19 0.75 16 14 C -0.27 -2.40 10.80 -39.99 -0.43 -2.83 16 15 C 0.07 0.60 12.02 -17.33 -0.21 0.39 16 16 N -0.29 -3.46 11.81 30.65 0.36 -3.09 16 17 N -0.51 -7.21 9.83 -11.99 -0.12 -7.32 16 18 C 0.17 2.30 9.26 -17.14 -0.16 2.14 16 19 C 0.06 0.94 4.69 -2.52 -0.01 0.93 16 20 C 0.18 3.09 3.16 -65.78 -0.21 2.88 16 21 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 22 N -0.71 -15.58 5.24 -51.35 -0.27 -15.85 16 23 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 24 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 25 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 26 N -0.93 -26.06 13.06 55.49 0.72 -25.33 16 27 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.07 0.94 7.76 -51.93 -0.40 0.53 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.15 1.64 7.91 -52.49 -0.42 1.23 16 37 H 0.15 1.64 7.67 -52.49 -0.40 1.24 16 38 H 0.19 1.85 8.05 -52.49 -0.42 1.42 16 39 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.19 2.49 4.62 -52.49 -0.24 2.24 16 42 H 0.08 1.18 6.84 -51.93 -0.36 0.83 16 43 H 0.07 1.17 6.85 -51.93 -0.36 0.81 16 44 H 0.39 9.13 7.76 -40.82 -0.32 8.82 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -30.93 378.68 -9.00 -39.92 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.82 Total: 10.70 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -4.03 Total: 2.57 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.08 Total: -65.43 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.93 -9.00 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054955962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.788 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds