Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 110.88497 * 2 1 4 4 C 1.54906 * 111.04293 * 123.90536 * 2 1 3 5 5 N 1.47426 * 104.83671 * 155.09766 * 4 2 1 6 6 C 1.34776 * 125.65058 * 155.91097 * 5 4 2 7 7 O 1.21583 * 119.99483 * 354.83924 * 6 5 4 8 8 C 1.47593 * 120.00039 * 174.84231 * 6 5 4 9 9 C 1.39968 * 120.59614 * 310.85019 * 8 6 5 10 10 C 1.38343 * 118.34889 * 179.97438 * 9 8 6 11 11 C 1.38390 * 119.45433 * 359.97438 * 10 9 8 12 12 N 1.31847 * 121.18077 * 0.02562 * 11 10 9 13 13 C 1.32252 * 121.80091 * 359.71556 * 12 11 10 14 14 N 1.39357 * 119.79987 * 180.29296 * 13 12 11 15 15 C 1.35943 * 126.10307 * 333.50095 * 14 13 12 16 16 C 1.35234 * 107.59978 * 179.97438 * 15 14 13 17 17 C 1.40011 * 107.97493 * 359.97438 * 16 15 14 18 18 N 1.30794 * 108.37775 * 359.74158 * 17 16 15 19 19 C 1.47323 * 108.73267 * 335.71829 * 5 4 2 20 20 C 1.54324 * 107.11999 * 1.29849 * 19 5 4 21 21 H 1.09001 * 110.72266 * 263.51993 * 20 19 5 22 22 N 1.46500 * 110.71566 * 140.42608 * 20 19 5 23 23 C 1.36942 * 119.99658 * 88.84637 * 22 20 19 24 24 H 1.08000 * 120.00345 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99804 * 179.97438 * 23 22 20 26 26 N 1.31618 * 119.99965 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00033 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47240 * 269.99931 * 27 25 23 29 29 H 1.48497 * 109.47444 * 29.99675 * 27 25 23 30 30 H 1.48497 * 109.47396 * 150.00107 * 27 25 23 31 31 H 1.09004 * 109.47283 * 183.88444 * 1 2 3 32 32 H 1.09006 * 109.46988 * 303.87546 * 1 2 3 33 33 H 1.09002 * 109.47598 * 63.87954 * 1 2 3 34 34 H 1.09002 * 110.36916 * 273.93958 * 4 2 1 35 35 H 1.09004 * 110.36278 * 36.15162 * 4 2 1 36 36 H 1.08001 * 120.82498 * 359.95056 * 9 8 6 37 37 H 1.08001 * 120.27776 * 180.02562 * 10 9 8 38 38 H 1.07999 * 119.41099 * 179.97438 * 11 10 9 39 39 H 1.07994 * 126.20076 * 359.97438 * 15 14 13 40 40 H 1.08000 * 126.01594 * 179.97438 * 16 15 14 41 41 H 1.08003 * 125.81117 * 180.02562 * 17 16 15 42 42 H 1.09002 * 110.06305 * 241.86950 * 19 5 4 43 43 H 1.08994 * 109.84912 * 120.61018 * 19 5 4 44 44 H 0.96999 * 120.00159 * 268.84016 * 22 20 19 45 45 H 0.97005 * 119.99836 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0861 -0.8065 1.1999 5 7 3.4281 -1.2421 0.7724 6 6 4.4491 -1.5603 1.5926 7 8 4.3335 -1.4097 2.7936 8 6 5.7073 -2.0913 1.0330 9 6 5.6886 -3.1448 0.1117 10 6 6.8953 -3.6059 -0.3836 11 6 8.0742 -3.0185 0.0410 12 7 8.0685 -2.0270 0.9100 13 6 6.9430 -1.5452 1.4104 14 7 6.9853 -0.4919 2.3218 15 6 8.0176 -0.1944 3.1549 16 6 7.6628 0.8956 3.8725 17 6 6.3779 1.2789 3.4693 18 7 5.9745 0.4536 2.5383 19 6 3.4675 -1.2769 -0.6999 20 6 2.0860 -0.8074 -1.2026 21 1 1.4453 -1.6612 -1.4232 22 7 2.2277 0.0504 -2.3817 23 6 2.2490 -0.5046 -3.6335 24 1 2.1618 -1.5746 -3.7514 25 6 2.3826 0.3082 -4.7508 26 7 2.4026 -0.2251 -5.9540 27 14 2.5342 2.1588 -4.5468 28 1 1.1818 2.7718 -4.5703 29 1 3.1925 2.4618 -3.2507 30 1 3.3486 2.7143 -5.6574 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3633 0.5728 0.8533 33 1 -0.3634 0.4524 -0.9227 34 1 2.1568 -0.1720 2.0834 35 1 1.4522 -1.6696 1.4033 36 1 4.7554 -3.5870 -0.2045 37 1 6.9171 -4.4171 -1.0963 38 1 9.0158 -3.3793 -0.3457 39 1 8.9516 -0.7312 3.2300 40 1 8.2646 1.3844 4.6243 41 1 5.8174 2.1165 3.8575 42 1 3.6621 -2.2924 -1.0449 43 1 4.2432 -0.6040 -1.0653 44 1 2.3063 1.0113 -2.2758 45 1 2.4964 0.3429 -6.7347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054959261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 124.932680 kcal Electronic energy + Delta-G solvation = -30050.914860 eV Core-core repulsion = 26071.712754 eV Total energy + Delta-G solvation = -3979.202106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70226 -40.35169 -39.35657 -37.50664 -34.26478 -33.82014 -33.17528 -32.13826 -31.06721 -30.41266 -29.63982 -27.94645 -26.59001 -24.67739 -24.21065 -23.64011 -21.54330 -21.24390 -20.92082 -20.20331 -19.64731 -18.45536 -17.61457 -17.21035 -16.95113 -15.82285 -15.74601 -15.56653 -15.26245 -14.63052 -14.56493 -14.29752 -13.96045 -13.72753 -13.59308 -13.47754 -13.21519 -13.08073 -12.84435 -12.81440 -12.58312 -12.39267 -12.19618 -11.71736 -11.46725 -11.17323 -10.85760 -10.80739 -10.66425 -10.52416 -10.40535 -10.24236 -10.11316 -9.99991 -9.70653 -9.62607 -9.24041 -9.05834 -8.46346 -8.34922 -7.43571 -5.88734 -3.26291 0.36648 0.75561 1.95704 2.07533 2.76664 2.79965 3.09268 3.31031 3.34632 3.39634 3.54906 4.07503 4.29160 4.46993 4.49648 4.58224 4.73983 4.82582 4.88928 4.99587 5.03489 5.04403 5.19226 5.37284 5.42224 5.49566 5.53871 5.64544 5.67920 5.71043 5.77029 5.77504 5.84250 5.86655 6.06481 6.09946 6.10642 6.25712 6.35352 6.45718 6.47501 6.50779 6.73862 6.96106 7.26095 7.67028 7.73605 7.85377 8.30053 8.32557 9.06685 9.79422 9.97762 11.28855 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.003802 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.326445 B = 7362.884087 C = 7970.049393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.590 3.410 7 O -0.525 6.525 8 C -0.165 4.165 9 C -0.021 4.021 10 C -0.183 4.183 11 C 0.146 3.854 12 N -0.506 5.506 13 C 0.408 3.592 14 N -0.326 5.326 15 C 0.073 3.927 16 C -0.261 4.261 17 C 0.057 3.943 18 N -0.249 5.249 19 C 0.073 3.927 20 C 0.183 3.817 21 H 0.077 0.923 22 N -0.736 5.736 23 C -0.253 4.253 24 H 0.092 0.908 25 C 0.012 3.988 26 N -0.929 5.929 27 Si 0.881 3.119 28 H -0.282 1.282 29 H -0.277 1.277 30 H -0.290 1.290 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.189 0.811 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.364 0.636 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -4.217 16.939 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.340 5.340 6 C 0.377 3.623 7 O -0.401 6.401 8 C -0.173 4.173 9 C -0.048 4.048 10 C -0.203 4.203 11 C -0.012 4.012 12 N -0.218 5.218 13 C 0.180 3.820 14 N -0.104 5.104 15 C -0.068 4.068 16 C -0.290 4.290 17 C -0.133 4.133 18 N -0.066 5.066 19 C -0.053 4.053 20 C 0.072 3.928 21 H 0.095 0.905 22 N -0.377 5.377 23 C -0.382 4.382 24 H 0.110 0.890 25 C -0.185 4.185 26 N -0.575 5.575 27 Si 0.711 3.289 28 H -0.208 1.208 29 H -0.203 1.203 30 H -0.216 1.216 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.189 0.811 39 H 0.195 0.805 40 H 0.172 0.828 41 H 0.206 0.794 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.321 -4.299 16.813 19.246 hybrid contribution 0.312 1.203 0.115 1.249 sum 8.633 -3.096 16.928 19.253 Atomic orbital electron populations 1.21621 0.93625 1.01870 1.02070 1.22663 0.96458 0.99761 0.94802 0.90047 1.22214 0.82243 0.98111 0.97778 1.48357 1.11863 1.66068 1.07740 1.17178 0.81739 0.77741 0.85656 1.90762 1.81483 1.53535 1.14321 1.20495 0.93950 1.00347 1.02473 1.21809 0.99947 0.92491 0.90527 1.22151 0.92627 1.02938 1.02586 1.22725 0.99070 0.89178 0.90252 1.66992 1.28195 1.14098 1.12538 1.17442 0.88739 0.86769 0.89066 1.45562 1.13610 1.22080 1.29172 1.22797 0.93682 0.97858 0.92449 1.21594 0.98455 1.01164 1.07766 1.24106 0.95351 0.98658 0.95203 1.77698 1.09045 1.00112 1.19716 1.23386 1.02986 1.01300 0.77610 1.21210 0.91734 0.93826 0.86078 0.90541 1.42723 1.88426 1.04520 1.02016 1.19055 1.43533 0.94239 0.81389 0.88988 1.24652 1.01401 0.97348 0.95081 1.69692 1.56332 1.34412 0.97111 0.86615 0.77962 0.87228 0.77127 1.20847 1.20295 1.21640 0.92527 0.93028 0.91425 0.90684 0.91510 0.83099 0.83116 0.81121 0.80491 0.82819 0.79410 0.91962 0.91186 0.80235 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.31 37.15 0.35 -1.40 16 2 C -0.12 -1.75 3.26 -88.48 -0.29 -2.04 16 3 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 4 C 0.12 1.74 6.40 -2.53 -0.02 1.72 16 5 N -0.61 -9.82 3.33 -171.48 -0.57 -10.39 16 6 C 0.59 10.22 6.04 -12.44 -0.08 10.14 16 7 O -0.52 -10.34 15.24 5.29 0.08 -10.26 16 8 C -0.16 -2.55 5.31 -104.67 -0.56 -3.11 16 9 C -0.02 -0.26 8.57 -38.90 -0.33 -0.60 16 10 C -0.18 -1.76 10.09 -39.49 -0.40 -2.16 16 11 C 0.15 1.47 11.17 -17.49 -0.20 1.27 16 12 N -0.51 -6.76 10.01 -12.03 -0.12 -6.88 16 13 C 0.41 6.39 7.39 -154.37 -1.14 5.25 16 14 N -0.33 -5.22 3.50 -11.89 -0.04 -5.26 16 15 C 0.07 0.93 11.21 -16.80 -0.19 0.74 16 16 C -0.26 -3.00 10.80 -39.99 -0.43 -3.43 16 17 C 0.06 0.76 12.02 -17.33 -0.21 0.55 16 18 N -0.25 -4.23 9.14 30.65 0.28 -3.95 16 19 C 0.07 1.22 5.79 -2.90 -0.02 1.21 16 20 C 0.18 3.23 3.06 -66.10 -0.20 3.03 16 21 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 22 N -0.74 -16.17 4.97 -51.65 -0.26 -16.43 16 23 C -0.25 -6.64 10.45 -15.06 -0.16 -6.79 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 25 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 26 N -0.93 -27.96 13.97 55.49 0.78 -27.18 16 27 Si 0.88 21.43 27.73 -169.99 -4.71 16.71 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 30 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 31 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 35 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16 36 H 0.15 1.62 6.68 -52.49 -0.35 1.27 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.19 1.86 8.06 -52.48 -0.42 1.43 16 42 H 0.06 0.96 6.08 -51.93 -0.32 0.64 16 43 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 44 H 0.36 8.09 5.60 -40.82 -0.23 7.86 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -35.10 374.37 -8.83 -43.93 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.94 Total: 9.45 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -3.96 Total: 4.61 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 0.07 Total: -70.09 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.10 -8.83 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054959261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.865 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds