Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.91865 * 2 1 4 4 C 1.54916 * 111.00301 * 236.09625 * 2 1 3 5 5 N 1.47424 * 104.83390 * 204.91804 * 4 2 1 6 6 C 1.34774 * 125.64902 * 204.16831 * 5 4 2 7 7 O 1.21586 * 119.99812 * 354.81254 * 6 5 4 8 8 C 1.47588 * 120.00401 * 174.80940 * 6 5 4 9 9 C 1.39973 * 120.59460 * 310.35456 * 8 6 5 10 10 C 1.38353 * 118.34971 * 179.77703 * 9 8 6 11 11 C 1.38388 * 119.45129 * 0.47378 * 10 9 8 12 12 N 1.31853 * 121.18153 * 359.76355 * 11 10 9 13 13 C 1.32248 * 121.80333 * 0.02562 * 12 11 10 14 14 N 1.39357 * 119.79893 * 179.97438 * 13 12 11 15 15 C 1.35925 * 126.10646 * 333.22460 * 14 13 12 16 16 C 1.35237 * 107.60491 * 179.97438 * 15 14 13 17 17 C 1.40018 * 107.96666 * 359.97438 * 16 15 14 18 18 N 1.30784 * 108.38074 * 359.71553 * 17 16 15 19 19 C 1.47019 * 108.70178 * 24.13053 * 5 4 2 20 20 C 1.54326 * 107.27387 * 358.93868 * 19 5 4 21 21 H 1.08993 * 110.72224 * 219.26437 * 20 19 5 22 22 N 1.46497 * 110.71654 * 96.16948 * 20 19 5 23 23 C 1.36940 * 120.00024 * 86.45670 * 22 20 19 24 24 H 1.07995 * 119.99853 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99928 * 179.97438 * 23 22 20 26 26 N 1.31616 * 119.99957 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99796 * 180.27298 * 25 23 22 28 28 H 1.48499 * 109.47404 * 269.72999 * 27 25 23 29 29 H 1.48506 * 109.46922 * 29.72634 * 27 25 23 30 30 H 1.48494 * 109.46903 * 149.72588 * 27 25 23 31 31 H 1.08997 * 109.46402 * 296.09750 * 1 2 3 32 32 H 1.08994 * 109.46829 * 56.09297 * 1 2 3 33 33 H 1.08994 * 109.47032 * 176.09522 * 1 2 3 34 34 H 1.09000 * 110.36213 * 86.07950 * 4 2 1 35 35 H 1.08999 * 110.45782 * 323.80658 * 4 2 1 36 36 H 1.08004 * 120.82374 * 359.97438 * 9 8 6 37 37 H 1.07993 * 120.27413 * 180.26092 * 10 9 8 38 38 H 1.07998 * 119.41254 * 179.74243 * 11 10 9 39 39 H 1.07994 * 126.20437 * 359.97438 * 15 14 13 40 40 H 1.08000 * 126.01549 * 179.97438 * 16 15 14 41 41 H 1.08007 * 125.80547 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.88108 * 239.52295 * 19 5 4 43 43 H 1.08997 * 110.00805 * 118.43291 * 19 5 4 44 44 H 0.97004 * 120.00223 * 266.45385 * 22 20 19 45 45 H 0.97000 * 119.99681 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7734 6 6 4.4481 -1.5604 -1.5941 7 8 4.2746 -1.5890 -2.7971 8 6 5.7767 -1.8729 -1.0325 9 6 6.3728 -1.0204 -0.0960 10 6 7.6172 -1.3607 0.4036 11 6 8.2354 -2.5169 -0.0394 12 7 7.6575 -3.3031 -0.9262 13 6 6.4674 -3.0265 -1.4322 14 7 5.8957 -3.8868 -2.3677 15 6 6.5681 -4.7092 -3.2156 16 6 5.6507 -5.3731 -3.9548 17 6 4.3797 -4.9476 -3.5499 18 7 4.5250 -4.0639 -2.5968 19 6 3.4674 -1.2743 0.6959 20 6 2.0862 -0.8080 1.2022 21 1 2.1921 -0.1726 2.0814 22 7 1.2269 -1.9575 1.4961 23 6 1.2816 -2.5564 2.7264 24 1 1.9579 -2.1811 3.4800 25 6 0.4669 -3.6453 3.0050 26 7 -0.3577 -4.1023 2.0867 27 14 0.5360 -4.4575 4.6858 28 1 1.5496 -5.5427 4.6698 29 1 0.9085 -3.4474 5.7087 30 1 -0.7949 -5.0280 5.0149 31 1 -0.3632 0.4521 0.9229 32 1 -0.3633 0.5733 -0.8529 33 1 -0.3633 -1.0252 -0.0700 34 1 2.1560 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4043 36 1 5.8722 -0.1209 0.2309 37 1 8.1038 -0.7275 1.1307 38 1 9.2087 -2.7797 0.3479 39 1 7.6406 -4.8137 -3.2862 40 1 5.8614 -6.1031 -4.7224 41 1 3.4393 -5.2942 -3.9524 42 1 4.2427 -0.5999 1.0598 43 1 3.6662 -2.2885 1.0422 44 1 0.6190 -2.2943 0.8193 45 1 -0.9272 -4.8630 2.2816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054959262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = 125.417074 kcal Electronic energy + Delta-G solvation = -30262.272727 eV Core-core repulsion = 26283.091626 eV Total energy + Delta-G solvation = -3979.181101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59721 -40.26066 -39.27623 -37.41914 -34.05176 -33.67770 -33.03126 -32.01926 -30.48172 -30.28912 -29.54985 -27.72609 -26.40786 -24.56055 -24.13667 -23.75650 -22.07770 -21.17810 -20.83628 -19.54578 -19.26329 -18.35696 -17.62886 -16.92757 -16.71441 -15.88177 -15.66953 -15.23089 -15.13752 -14.60396 -14.49200 -14.11404 -13.93698 -13.68136 -13.56877 -13.37935 -13.10043 -12.99046 -12.82760 -12.70824 -12.36086 -12.05251 -11.92249 -11.54237 -11.12577 -10.93598 -10.79524 -10.65005 -10.49499 -10.44093 -10.26917 -10.18583 -10.03374 -9.90342 -9.67434 -9.51481 -9.12472 -9.00096 -8.36560 -8.16765 -7.05723 -5.83208 -3.13064 0.42666 0.78762 2.05939 2.19083 2.90634 2.92333 3.23715 3.39344 3.44317 3.46387 3.63559 4.13363 4.36773 4.52342 4.55145 4.63045 4.76535 4.94984 5.00694 5.05948 5.18610 5.27125 5.34992 5.45298 5.50882 5.62957 5.66007 5.74793 5.76093 5.79871 5.93778 5.95652 5.96998 6.13081 6.19296 6.27561 6.35282 6.36971 6.54375 6.61061 6.66780 6.77120 6.93142 7.07310 7.34486 7.63310 7.80484 7.91034 8.34513 8.47507 9.46545 10.01563 10.36220 11.38897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.003887 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.966873 B = 7202.515083 C = 7414.715620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.588 3.412 7 O -0.526 6.526 8 C -0.161 4.161 9 C -0.024 4.024 10 C -0.187 4.187 11 C 0.144 3.856 12 N -0.506 5.506 13 C 0.412 3.588 14 N -0.328 5.328 15 C 0.069 3.931 16 C -0.259 4.259 17 C 0.058 3.942 18 N -0.241 5.241 19 C 0.070 3.930 20 C 0.174 3.826 21 H 0.070 0.930 22 N -0.710 5.710 23 C -0.247 4.247 24 H 0.071 0.929 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.281 1.281 30 H -0.291 1.291 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.190 0.810 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.388 0.612 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.271 6.322 -7.263 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.374 3.626 7 O -0.403 6.403 8 C -0.169 4.169 9 C -0.051 4.051 10 C -0.208 4.208 11 C -0.014 4.014 12 N -0.218 5.218 13 C 0.183 3.817 14 N -0.106 5.106 15 C -0.071 4.071 16 C -0.288 4.288 17 C -0.132 4.132 18 N -0.058 5.058 19 C -0.056 4.056 20 C 0.061 3.939 21 H 0.088 0.912 22 N -0.352 5.352 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.207 1.207 30 H -0.217 1.217 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.194 0.806 40 H 0.172 0.828 41 H 0.207 0.793 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.086 6.270 -7.192 17.851 hybrid contribution 0.025 -0.681 0.525 0.860 sum 15.112 5.589 -6.667 17.437 Atomic orbital electron populations 1.21537 0.93317 1.03020 1.00946 1.22623 0.97020 0.98348 0.95399 0.90355 1.22224 0.82698 0.98233 0.96969 1.48178 1.11608 1.65720 1.07521 1.17137 0.82558 0.77178 0.85728 1.90762 1.83325 1.52012 1.14187 1.20536 0.98176 0.96203 1.01948 1.21764 0.94196 0.98162 0.90945 1.22095 0.96255 0.99563 1.02884 1.22696 0.98876 0.89507 0.90352 1.67000 1.09708 1.32588 1.12529 1.17462 0.89218 0.86403 0.88584 1.45601 1.05350 1.31795 1.27894 1.22763 0.99471 0.92547 0.92338 1.21602 0.91755 1.08122 1.07304 1.24151 0.99420 0.94719 0.94943 1.77800 0.90101 1.18784 1.19126 1.23366 1.01431 1.02040 0.78748 1.21189 0.88227 0.89905 0.94559 0.91245 1.42444 1.45267 1.32745 1.14702 1.19197 1.18534 1.09544 0.90500 0.91109 1.24736 0.98959 0.98834 0.97846 1.69654 1.27195 1.27442 1.33183 0.86226 0.76905 0.79452 0.83787 1.21776 1.20679 1.21718 0.92094 0.93658 0.91170 0.91435 0.91120 0.83265 0.83373 0.81273 0.80590 0.82830 0.79315 0.93082 0.90764 0.77666 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.85 37.16 0.33 -1.72 16 2 C -0.11 -1.77 3.51 -88.46 -0.31 -2.08 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.07 6.33 -2.53 -0.02 2.05 16 5 N -0.60 -10.63 3.33 -171.72 -0.57 -11.20 16 6 C 0.59 10.97 6.03 -12.45 -0.08 10.89 16 7 O -0.53 -11.21 15.30 5.29 0.08 -11.13 16 8 C -0.16 -2.60 5.30 -104.67 -0.55 -3.15 16 9 C -0.02 -0.29 8.53 -38.89 -0.33 -0.62 16 10 C -0.19 -1.72 10.09 -39.48 -0.40 -2.12 16 11 C 0.14 1.44 11.17 -17.49 -0.20 1.25 16 12 N -0.51 -6.99 10.01 -12.03 -0.12 -7.11 16 13 C 0.41 6.80 7.39 -154.37 -1.14 5.66 16 14 N -0.33 -5.71 3.50 -11.90 -0.04 -5.75 16 15 C 0.07 0.97 11.21 -16.81 -0.19 0.78 16 16 C -0.26 -3.37 10.80 -39.98 -0.43 -3.80 16 17 C 0.06 0.89 12.02 -17.33 -0.21 0.69 16 18 N -0.24 -4.63 9.14 30.65 0.28 -4.35 16 19 C 0.07 1.22 5.85 -3.06 -0.02 1.20 16 20 C 0.17 3.18 3.37 -66.10 -0.22 2.96 16 21 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 22 N -0.71 -16.67 4.61 -51.65 -0.24 -16.91 16 23 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 27 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.29 6.38 -51.93 -0.33 0.96 16 34 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.07 1.36 7.99 -51.93 -0.41 0.94 16 36 H 0.15 1.49 6.73 -52.48 -0.35 1.14 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.19 2.33 8.06 -52.48 -0.42 1.91 16 42 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 43 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 44 H 0.39 9.85 6.10 -40.82 -0.25 9.60 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -35.20 374.03 -9.13 -44.32 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.85 Total: 11.21 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -4.01 Total: 5.04 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: 0.03 Total: -71.99 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.20 -9.13 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054959262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.741 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds