Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.88375 * 2 1 4 4 C 1.54904 * 111.00460 * 236.12162 * 2 1 3 5 5 N 1.47421 * 104.83233 * 204.87816 * 4 2 1 6 6 C 1.34780 * 125.64632 * 204.08879 * 5 4 2 7 7 O 1.21551 * 120.00172 * 5.78522 * 6 5 4 8 8 C 1.47865 * 120.00001 * 185.77680 * 6 5 4 9 9 C 1.39661 * 120.08533 * 353.01775 * 8 6 5 10 10 C 1.38012 * 120.09501 * 179.97438 * 9 8 6 11 11 C 1.38157 * 120.27901 * 359.95267 * 10 9 8 12 12 C 1.39414 * 120.16882 * 0.05034 * 11 10 9 13 13 C 1.48423 * 120.05166 * 180.24906 * 12 11 10 14 14 N 1.33970 * 125.64742 * 359.72207 * 13 12 11 15 15 C 1.30681 * 109.77723 * 179.97438 * 14 13 12 16 16 N 1.34521 * 108.29311 * 0.02562 * 15 14 13 17 17 H 0.96996 * 126.74123 * 180.02562 * 16 15 14 18 18 N 1.31489 * 125.65018 * 179.40808 * 13 12 11 19 19 C 1.39098 * 119.89903 * 359.96870 * 12 11 10 20 20 C 1.47019 * 108.70292 * 24.35556 * 5 4 2 21 21 C 1.54325 * 107.26698 * 358.58298 * 20 5 4 22 22 H 1.09005 * 110.66805 * 96.52407 * 21 20 5 23 23 N 1.46496 * 110.85321 * 219.67426 * 21 20 5 24 24 C 1.36938 * 120.00302 * 268.69083 * 23 21 20 25 25 H 1.08003 * 119.99881 * 0.02562 * 24 23 21 26 26 C 1.38813 * 120.00246 * 179.97438 * 24 23 21 27 27 N 1.31621 * 119.99739 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 120.00005 * 0.02562 * 26 24 23 29 29 H 1.48497 * 109.46934 * 89.99633 * 28 26 24 30 30 H 1.48496 * 109.47350 * 209.99727 * 28 26 24 31 31 H 1.48500 * 109.46822 * 329.99706 * 28 26 24 32 32 H 1.09005 * 109.47594 * 182.42785 * 1 2 3 33 33 H 1.09003 * 109.47269 * 302.42616 * 1 2 3 34 34 H 1.09001 * 109.47599 * 62.42666 * 1 2 3 35 35 H 1.08997 * 110.37022 * 86.03540 * 4 2 1 36 36 H 1.09006 * 110.46050 * 323.76338 * 4 2 1 37 37 H 1.08003 * 119.94974 * 359.97438 * 9 8 6 38 38 H 1.08005 * 119.86040 * 179.97438 * 10 9 8 39 39 H 1.07994 * 119.92108 * 180.02562 * 11 10 9 40 40 H 1.08002 * 125.85205 * 179.97438 * 15 14 13 41 41 H 1.08002 * 120.13444 * 179.97438 * 19 12 11 42 42 H 1.08997 * 109.88644 * 118.13736 * 20 5 4 43 43 H 1.09009 * 109.87822 * 239.29657 * 20 5 4 44 44 H 0.97005 * 120.00326 * 88.69568 * 23 21 20 45 45 H 0.97004 * 119.99793 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4274 -1.2419 -0.7742 6 6 4.4478 -1.5598 -1.5953 7 8 4.3356 -1.3983 -2.7948 8 6 5.7038 -2.1049 -1.0370 9 6 5.8914 -2.1553 0.3460 10 6 7.0634 -2.6644 0.8673 11 6 8.0566 -3.1277 0.0261 12 6 7.8813 -3.0828 -1.3562 13 6 8.9477 -3.5863 -2.2575 14 7 10.1216 -4.1006 -1.8670 15 6 10.8233 -4.4456 -2.9140 16 7 10.1077 -4.1568 -4.0159 17 1 10.3752 -4.3039 -4.9365 18 7 8.8945 -3.6068 -3.5711 19 6 6.7031 -2.5707 -1.8895 20 6 3.4665 -1.2785 0.6950 21 6 2.0870 -0.8078 1.2019 22 1 1.4464 -1.6616 1.4227 23 7 2.2294 0.0496 2.3812 24 6 2.2014 -0.5003 3.6350 25 1 2.0747 -1.5662 3.7544 26 6 2.3369 0.3120 4.7524 27 7 2.3105 -0.2168 5.9575 28 14 2.5568 2.1555 4.5459 29 1 1.2261 2.8145 4.5355 30 1 3.3637 2.6872 5.6734 31 1 3.2553 2.4301 3.2645 32 1 -0.3634 -1.0268 0.0435 33 1 -0.3634 0.5511 0.8674 34 1 -0.3634 0.4757 -0.9109 35 1 2.1552 -0.1714 -2.0839 36 1 1.4527 -1.6702 -1.4045 37 1 5.1181 -1.7952 1.0085 38 1 7.2047 -2.7012 1.9375 39 1 8.9713 -3.5254 0.4403 40 1 11.8092 -4.8863 -2.8975 41 1 6.5635 -2.5336 -2.9598 42 1 3.6616 -2.2953 1.0356 43 1 4.2430 -0.6071 1.0620 44 1 2.3435 1.0069 2.2740 45 1 2.4048 0.3509 6.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 122.182674 kcal Electronic energy + Delta-G solvation = -28741.340801 eV Core-core repulsion = 24762.019446 eV Total energy + Delta-G solvation = -3979.321355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36408 -40.45137 -38.63714 -37.49754 -34.33032 -33.62935 -32.68292 -32.07957 -31.26746 -30.92327 -30.06671 -28.13746 -26.54238 -24.57220 -23.94441 -23.32151 -22.33893 -21.51414 -20.73652 -20.25415 -19.58621 -18.67163 -17.62775 -16.99797 -16.40389 -16.11806 -15.78854 -15.60186 -15.37246 -14.80192 -14.59497 -14.34039 -14.02325 -13.74183 -13.45864 -13.38200 -13.19333 -12.87882 -12.69381 -12.51835 -12.46162 -12.36452 -11.85009 -11.58524 -11.51813 -11.32233 -11.04626 -10.77860 -10.66838 -10.48443 -10.41384 -10.40440 -10.29226 -10.06152 -9.83013 -9.68395 -9.04496 -9.03557 -8.69083 -8.43087 -7.44864 -5.89070 -3.27535 0.63258 1.00703 1.51010 2.28701 2.58622 3.06118 3.10713 3.30259 3.33395 3.39753 3.67478 3.91916 4.26755 4.46565 4.48778 4.60519 4.84089 4.94219 4.95882 5.00150 5.13087 5.23269 5.38151 5.44004 5.48187 5.55273 5.60784 5.66606 5.72529 5.80615 5.86448 5.87276 5.98440 6.00990 6.05032 6.19008 6.24581 6.28889 6.33241 6.41026 6.43242 6.48206 6.66008 6.68258 6.79033 7.65564 7.69166 7.84801 8.27789 8.29414 9.05645 9.77989 9.95780 11.28274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.002723 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.131292 B =10281.997598 C =11790.906437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.114 3.886 5 N -0.608 5.608 6 C 0.573 3.427 7 O -0.548 6.548 8 C -0.135 4.135 9 C -0.102 4.102 10 C -0.129 4.129 11 C -0.052 4.052 12 C -0.037 4.037 13 C 0.277 3.723 14 N -0.535 5.535 15 C 0.264 3.736 16 N -0.485 5.485 17 H 0.443 0.557 18 N -0.303 5.303 19 C -0.026 4.026 20 C 0.060 3.940 21 C 0.180 3.820 22 H 0.080 0.920 23 N -0.735 5.735 24 C -0.255 4.255 25 H 0.093 0.907 26 C 0.012 3.988 27 N -0.927 5.927 28 Si 0.882 3.118 29 H -0.283 1.283 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.175 0.825 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.225 0.775 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.365 0.635 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -7.262 -17.297 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.363 3.637 7 O -0.428 6.428 8 C -0.138 4.138 9 C -0.120 4.120 10 C -0.147 4.147 11 C -0.073 4.073 12 C -0.040 4.040 13 C -0.003 4.003 14 N -0.263 5.263 15 C -0.036 4.036 16 N -0.204 5.204 17 H 0.289 0.711 18 N -0.132 5.132 19 C -0.047 4.047 20 C -0.065 4.065 21 C 0.068 3.932 22 H 0.098 0.902 23 N -0.376 5.376 24 C -0.384 4.384 25 H 0.111 0.889 26 C -0.185 4.185 27 N -0.574 5.574 28 Si 0.712 3.288 29 H -0.210 1.210 30 H -0.216 1.216 31 H -0.202 1.202 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.191 0.809 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.241 0.759 41 H 0.159 0.841 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.093 -7.132 -17.788 22.660 hybrid contribution 0.941 1.034 -0.619 1.529 sum 13.034 -6.098 -18.407 23.364 Atomic orbital electron populations 1.21610 0.93555 1.02208 1.01776 1.22695 0.96626 0.99696 0.94815 0.90003 1.22281 0.82370 0.98362 0.97831 1.48334 1.12133 1.65834 1.07732 1.17896 0.82544 0.77780 0.85466 1.90743 1.82157 1.55160 1.14694 1.19740 0.95287 1.04858 0.93958 1.23265 0.99077 0.94419 0.95259 1.21214 0.93322 0.99574 1.00631 1.21426 0.99162 0.95124 0.91543 1.17281 0.91463 1.03824 0.91436 1.22283 0.92502 0.96765 0.88744 1.70514 1.04958 1.20191 1.30604 1.26110 0.99123 0.96600 0.81740 1.48134 1.13068 1.48544 1.10616 0.71147 1.78312 1.01394 1.21188 1.12313 1.21206 0.90280 0.92572 1.00691 1.23739 1.02922 1.01669 0.78211 1.21299 0.91802 0.93966 0.86102 0.90186 1.42726 1.87911 1.05096 1.01849 1.19065 1.43501 0.94692 0.81183 0.88880 1.24671 1.01329 0.97395 0.95081 1.69695 1.56063 1.34581 0.97017 0.86610 0.77995 0.87117 0.77128 1.20958 1.21649 1.20220 0.92416 0.91497 0.93041 0.90622 0.91231 0.80877 0.84369 0.84418 0.75879 0.84143 0.90568 0.89813 0.80199 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.30 37.15 0.35 -1.34 16 2 C -0.12 -1.68 3.27 -88.48 -0.29 -1.97 16 3 H 0.08 1.20 8.01 -51.93 -0.42 0.79 16 4 C 0.11 1.60 6.40 -2.53 -0.02 1.58 16 5 N -0.61 -9.41 3.33 -176.28 -0.59 -10.00 16 6 C 0.57 9.67 7.81 -12.32 -0.10 9.57 16 7 O -0.55 -10.61 16.59 5.32 0.09 -10.52 16 8 C -0.14 -2.06 5.87 -105.01 -0.62 -2.68 16 9 C -0.10 -1.41 8.61 -39.13 -0.34 -1.75 16 10 C -0.13 -1.59 10.02 -39.69 -0.40 -1.98 16 11 C -0.05 -0.64 9.68 -39.17 -0.38 -1.02 16 12 C -0.04 -0.51 5.87 -104.94 -0.62 -1.13 16 13 C 0.28 3.63 7.77 -156.63 -1.22 2.41 16 14 N -0.54 -6.01 10.81 -12.38 -0.13 -6.15 16 15 C 0.26 1.79 13.11 -90.70 -1.19 0.60 16 16 N -0.49 -3.58 7.44 29.52 0.22 -3.36 16 17 H 0.44 1.45 8.96 -182.35 -1.63 -0.18 16 18 N -0.30 -3.77 12.42 32.10 0.40 -3.38 16 19 C -0.03 -0.39 9.22 -38.84 -0.36 -0.75 16 20 C 0.06 0.93 4.63 -3.07 -0.01 0.91 16 21 C 0.18 3.02 3.08 -66.10 -0.20 2.81 16 22 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 23 N -0.73 -15.32 4.96 -51.65 -0.26 -15.58 16 24 C -0.25 -6.47 10.44 -15.06 -0.16 -6.63 16 25 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 26 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 27 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 28 Si 0.88 20.73 27.74 -169.99 -4.71 16.01 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 32 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 36 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.17 2.43 2.72 -58.51 -0.16 2.27 16 38 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.14 1.49 7.82 -52.49 -0.41 1.08 16 40 H 0.23 0.26 8.06 -52.49 -0.42 -0.17 16 41 H 0.14 2.18 7.43 -52.49 -0.39 1.79 16 42 H 0.08 1.13 6.75 -51.93 -0.35 0.78 16 43 H 0.08 1.36 6.61 -51.92 -0.34 1.02 16 44 H 0.36 7.62 5.62 -40.82 -0.23 7.39 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -34.64 373.36 -11.10 -45.74 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.88 Total: 9.32 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -5.64 Total: -1.12 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: 0.42 Total: -65.07 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.64 -11.10 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.927 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds