Wall clock time and date at job start Sat Apr 11 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.88786 * 2 1 4 4 C 1.55140 * 110.90196 * 124.09023 * 2 1 3 5 5 N 1.47426 * 104.71814 * 155.27887 * 4 2 1 6 6 C 1.34776 * 125.64811 * 155.81738 * 5 4 2 7 7 O 1.21546 * 120.00057 * 4.98468 * 6 5 4 8 8 C 1.47861 * 120.00073 * 184.98382 * 6 5 4 9 9 C 1.39656 * 120.08520 * 352.06815 * 8 6 5 10 10 C 1.38020 * 120.09704 * 179.97438 * 9 8 6 11 11 C 1.38157 * 120.27171 * 0.02790 * 10 9 8 12 12 C 1.39408 * 120.17224 * 359.97438 * 11 10 9 13 13 C 1.48429 * 120.05276 * 179.97438 * 12 11 10 14 14 N 1.33977 * 125.64560 * 359.97438 * 13 12 11 15 15 C 1.30679 * 109.77875 * 179.97438 * 14 13 12 16 16 N 1.34523 * 108.29007 * 0.02562 * 15 14 13 17 17 H 0.97003 * 126.73923 * 179.97438 * 16 15 14 18 18 N 1.31483 * 125.65255 * 179.69058 * 13 12 11 19 19 C 1.39090 * 119.90202 * 359.97438 * 12 11 10 20 20 C 1.47021 * 108.70292 * 335.55282 * 5 4 2 21 21 C 1.54322 * 107.27341 * 1.28807 * 20 5 4 22 22 H 1.09006 * 110.72378 * 263.83132 * 21 20 5 23 23 N 1.46503 * 110.72230 * 140.56007 * 21 20 5 24 24 C 1.36927 * 120.00171 * 86.45470 * 23 21 20 25 25 H 1.08000 * 120.00224 * 0.02562 * 24 23 21 26 26 C 1.38810 * 119.99995 * 180.02562 * 24 23 21 27 27 N 1.31622 * 119.99918 * 179.97438 * 26 24 23 28 28 Si 1.86795 * 120.00105 * 0.02562 * 26 24 23 29 29 H 1.48497 * 109.47649 * 89.99582 * 28 26 24 30 30 H 1.48503 * 109.47336 * 210.00196 * 28 26 24 31 31 H 1.48504 * 109.46981 * 329.99587 * 28 26 24 32 32 H 1.09002 * 109.47181 * 183.88525 * 1 2 3 33 33 H 1.08999 * 109.47050 * 303.88317 * 1 2 3 34 34 H 1.08999 * 109.46967 * 63.88659 * 1 2 3 35 35 H 1.08994 * 110.49772 * 36.43879 * 4 2 1 36 36 H 1.08994 * 110.34002 * 274.03807 * 4 2 1 37 37 H 1.07999 * 119.95175 * 0.26014 * 9 8 6 38 38 H 1.07997 * 119.86679 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.91719 * 179.97438 * 11 10 9 40 40 H 1.07998 * 125.85600 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.13778 * 179.97438 * 19 12 11 42 42 H 1.08996 * 109.88752 * 120.70842 * 20 5 4 43 43 H 1.09004 * 109.88322 * 241.87013 * 20 5 4 44 44 H 0.97000 * 119.99459 * 266.45584 * 23 21 20 45 45 H 0.97001 * 119.99885 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8123 1.2002 5 7 3.4271 -1.2433 0.7731 6 6 4.4476 -1.5621 1.5937 7 8 4.2734 -1.5936 2.7962 8 6 5.7791 -1.8734 1.0312 9 6 5.9434 -2.0005 -0.3498 10 6 7.1862 -2.2907 -0.8752 11 6 8.2739 -2.4575 -0.0398 12 6 8.1227 -2.3331 1.3405 13 6 9.2929 -2.5134 2.2357 14 7 10.5413 -2.7974 1.8411 15 6 11.3247 -2.8875 2.8831 16 7 10.5882 -2.6611 3.9858 17 1 10.9020 -2.6634 4.9037 18 7 9.2771 -2.4157 3.5468 19 6 6.8737 -2.0399 1.8776 20 6 3.4675 -1.2739 -0.6962 21 6 2.0862 -0.8075 -1.2024 22 1 1.4468 -1.6627 -1.4214 23 7 2.2287 0.0503 -2.3814 24 6 2.3035 -0.5082 -3.6294 25 1 2.2569 -1.5810 -3.7447 26 6 2.4390 0.3046 -4.7465 27 7 2.5114 -0.2323 -5.9461 28 14 2.5202 2.1601 -4.5472 29 1 3.9350 2.5785 -4.3786 30 1 1.9513 2.8129 -5.7537 31 1 1.7386 2.5641 -3.3509 32 1 -0.3634 -1.0253 0.0696 33 1 -0.3633 0.5729 0.8531 34 1 -0.3633 0.4523 -0.9228 35 1 1.4524 -1.6786 1.3983 36 1 2.1514 -0.1808 2.0860 37 1 5.0975 -1.8671 -1.0080 38 1 7.3089 -2.3885 -1.9437 39 1 9.2438 -2.6848 -0.4570 40 1 12.3821 -3.1062 2.8626 41 1 6.7522 -1.9431 2.9464 42 1 4.2426 -0.5994 -1.0600 43 1 3.6651 -2.2890 -1.0406 44 1 2.2702 1.0138 -2.2779 45 1 2.6065 0.3357 -6.7267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:50 Heat of formation + Delta-G solvation = 122.225072 kcal Electronic energy + Delta-G solvation = -28785.080138 eV Core-core repulsion = 24805.760621 eV Total energy + Delta-G solvation = -3979.319516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35340 -40.44308 -38.62769 -37.49573 -34.32242 -33.61996 -32.68086 -32.06999 -31.25964 -30.91506 -30.05588 -28.12083 -26.53984 -24.57524 -23.93713 -23.32304 -22.33120 -21.49715 -20.72292 -20.24262 -19.57867 -18.66061 -17.60846 -16.97259 -16.38446 -16.15255 -15.77653 -15.64554 -15.34710 -14.76501 -14.59382 -14.31109 -14.04777 -13.71932 -13.46261 -13.38356 -13.20451 -12.85252 -12.67483 -12.54570 -12.46130 -12.35549 -11.85082 -11.58930 -11.51628 -11.31305 -11.04267 -10.76940 -10.68098 -10.50428 -10.40044 -10.34939 -10.28106 -10.06325 -9.83109 -9.68788 -9.03951 -9.02367 -8.67628 -8.42772 -7.44542 -5.88870 -3.27329 0.64702 1.02113 1.52192 2.29624 2.59841 3.06253 3.11848 3.30489 3.33532 3.39876 3.68541 3.93146 4.27838 4.47289 4.49221 4.61454 4.83407 4.94729 4.97062 4.98698 5.14929 5.25209 5.37948 5.45808 5.46626 5.56356 5.59636 5.66453 5.71625 5.81021 5.87470 5.88329 5.98661 6.02885 6.05380 6.18249 6.24607 6.29016 6.34479 6.41455 6.43106 6.48320 6.66935 6.68913 6.80562 7.66087 7.70212 7.84888 8.28398 8.29676 9.05966 9.78361 9.96262 11.28492 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.002812 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.520255 B = 9954.923144 C =11511.559437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.608 5.608 6 C 0.573 3.427 7 O -0.548 6.548 8 C -0.136 4.136 9 C -0.101 4.101 10 C -0.129 4.129 11 C -0.052 4.052 12 C -0.037 4.037 13 C 0.277 3.723 14 N -0.535 5.535 15 C 0.263 3.737 16 N -0.485 5.485 17 H 0.443 0.557 18 N -0.303 5.303 19 C -0.027 4.027 20 C 0.060 3.940 21 C 0.180 3.820 22 H 0.077 0.923 23 N -0.736 5.736 24 C -0.255 4.255 25 H 0.093 0.907 26 C 0.012 3.988 27 N -0.927 5.927 28 Si 0.881 3.119 29 H -0.283 1.283 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.174 0.826 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.225 0.775 41 H 0.141 0.859 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.365 0.635 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.919 -4.457 17.220 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.340 5.340 6 C 0.363 3.637 7 O -0.428 6.428 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.147 4.147 11 C -0.073 4.073 12 C -0.040 4.040 13 C -0.003 4.003 14 N -0.263 5.263 15 C -0.036 4.036 16 N -0.204 5.204 17 H 0.288 0.712 18 N -0.132 5.132 19 C -0.048 4.048 20 C -0.065 4.065 21 C 0.068 3.932 22 H 0.095 0.905 23 N -0.377 5.377 24 C -0.384 4.384 25 H 0.111 0.889 26 C -0.185 4.185 27 N -0.574 5.574 28 Si 0.711 3.289 29 H -0.209 1.209 30 H -0.217 1.217 31 H -0.202 1.202 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.191 0.809 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.241 0.759 41 H 0.158 0.842 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.356 -4.526 17.718 22.069 hybrid contribution 0.895 1.259 0.602 1.658 sum 13.251 -3.266 18.320 22.845 Atomic orbital electron populations 1.21628 0.93592 1.01966 1.02087 1.22711 0.96595 0.99641 0.94750 0.89916 1.22324 0.82495 0.98242 0.97645 1.48351 1.11947 1.65978 1.07767 1.17893 0.83329 0.76963 0.85504 1.90742 1.83842 1.53727 1.14454 1.19733 0.93494 1.06630 0.94007 1.23239 1.00311 0.93206 0.95131 1.21218 0.92094 1.00738 1.00654 1.21427 0.99771 0.94486 0.91571 1.17277 0.88901 1.06319 0.91525 1.22286 0.91970 0.97270 0.88748 1.70516 1.01259 1.23824 1.30660 1.26108 0.99804 0.95905 0.81761 1.48137 1.06673 1.54802 1.10771 0.71155 1.78309 0.96958 1.25451 1.12495 1.21199 0.89871 0.93054 1.00641 1.23730 1.03049 1.01560 0.78132 1.21286 0.91799 0.93970 0.86112 0.90500 1.42717 1.88637 1.04075 1.02277 1.19049 1.43731 0.94005 0.81640 0.88897 1.24668 1.01350 0.97333 0.95112 1.69695 1.55976 1.34346 0.97354 0.86613 0.77993 0.87206 0.77076 1.20928 1.21666 1.20205 0.92439 0.93007 0.91424 0.91190 0.90733 0.80920 0.84348 0.84422 0.75884 0.84163 0.89626 0.90662 0.80178 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.12 -1.66 3.26 -88.35 -0.29 -1.95 16 3 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 4 C 0.12 1.61 6.36 -2.40 -0.02 1.60 16 5 N -0.61 -9.42 3.32 -175.52 -0.58 -10.01 16 6 C 0.57 9.68 7.81 -12.32 -0.10 9.59 16 7 O -0.55 -10.61 16.67 5.32 0.09 -10.52 16 8 C -0.14 -2.08 5.87 -105.01 -0.62 -2.70 16 9 C -0.10 -1.41 8.60 -39.13 -0.34 -1.74 16 10 C -0.13 -1.61 10.02 -39.69 -0.40 -2.01 16 11 C -0.05 -0.65 9.68 -39.18 -0.38 -1.03 16 12 C -0.04 -0.52 5.87 -104.95 -0.62 -1.13 16 13 C 0.28 3.67 7.77 -156.63 -1.22 2.45 16 14 N -0.54 -6.09 10.81 -12.38 -0.13 -6.22 16 15 C 0.26 1.82 13.11 -90.70 -1.19 0.63 16 16 N -0.49 -3.63 7.44 29.52 0.22 -3.41 16 17 H 0.44 1.50 8.96 -182.34 -1.63 -0.14 16 18 N -0.30 -3.81 12.42 32.10 0.40 -3.41 16 19 C -0.03 -0.40 9.22 -38.85 -0.36 -0.76 16 20 C 0.06 0.94 4.62 -3.07 -0.01 0.93 16 21 C 0.18 3.02 3.06 -66.10 -0.20 2.82 16 22 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 23 N -0.74 -15.34 4.98 -51.65 -0.26 -15.60 16 24 C -0.25 -6.46 10.46 -15.06 -0.16 -6.62 16 25 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 26 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 27 N -0.93 -27.38 13.97 55.49 0.78 -26.61 16 28 Si 0.88 20.72 27.74 -169.99 -4.71 16.00 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 32 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 36 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.17 2.44 2.75 -57.72 -0.16 2.28 16 38 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.14 1.52 7.82 -52.48 -0.41 1.11 16 40 H 0.23 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.14 2.19 7.44 -52.49 -0.39 1.80 16 42 H 0.09 1.40 6.55 -51.93 -0.34 1.06 16 43 H 0.08 1.12 6.81 -51.93 -0.35 0.77 16 44 H 0.36 7.62 5.57 -40.82 -0.23 7.39 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -34.61 373.44 -11.10 -45.71 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.88 Total: 9.48 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -5.63 Total: -1.04 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.42 Total: -65.26 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.71 Total: 16.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.61 -11.10 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.934 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds