Wall clock time and date at job start Sat Apr 11 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.91726 * 2 1 4 4 C 1.55386 * 111.18705 * 235.93717 * 2 1 3 5 5 N 1.47432 * 104.86953 * 204.98033 * 4 2 1 6 6 C 1.34776 * 125.64718 * 204.17012 * 5 4 2 7 7 O 1.21559 * 119.99791 * 354.76038 * 6 5 4 8 8 C 1.47862 * 120.00155 * 174.76166 * 6 5 4 9 9 C 1.39653 * 120.08511 * 7.67275 * 8 6 5 10 10 C 1.38016 * 120.09773 * 179.74435 * 9 8 6 11 11 C 1.38165 * 120.27041 * 0.55384 * 10 9 8 12 12 C 1.39412 * 120.17014 * 359.69300 * 11 10 9 13 13 C 1.48427 * 120.04920 * 180.02562 * 12 11 10 14 14 N 1.33979 * 125.64530 * 359.97438 * 13 12 11 15 15 C 1.30684 * 109.77477 * 179.97438 * 14 13 12 16 16 N 1.34527 * 108.29376 * 359.97438 * 15 14 13 17 17 H 0.96998 * 126.73809 * 180.02562 * 16 15 14 18 18 N 1.31489 * 125.65119 * 179.66969 * 13 12 11 19 19 C 1.39089 * 119.90073 * 0.02968 * 12 11 10 20 20 C 1.47020 * 108.70422 * 24.13673 * 5 4 2 21 21 C 1.54322 * 107.27213 * 358.93768 * 20 5 4 22 22 H 1.08993 * 110.71810 * 219.26935 * 21 20 5 23 23 N 1.46496 * 110.71908 * 96.17061 * 21 20 5 24 24 C 1.36934 * 120.00231 * 88.84396 * 23 21 20 25 25 H 1.07999 * 119.99891 * 359.97438 * 24 23 21 26 26 C 1.38815 * 120.00439 * 179.97438 * 24 23 21 27 27 N 1.31613 * 119.99646 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00082 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.47163 * 270.00222 * 28 26 24 30 30 H 1.48500 * 109.47343 * 30.00192 * 28 26 24 31 31 H 1.48499 * 109.47239 * 150.00229 * 28 26 24 32 32 H 1.09002 * 109.47128 * 296.10053 * 1 2 3 33 33 H 1.09000 * 109.46721 * 56.09870 * 1 2 3 34 34 H 1.09000 * 109.46886 * 176.09506 * 1 2 3 35 35 H 1.08999 * 110.34164 * 86.13827 * 4 2 1 36 36 H 1.08996 * 110.44793 * 323.88224 * 4 2 1 37 37 H 1.08002 * 119.95106 * 359.97438 * 9 8 6 38 38 H 1.07994 * 119.86935 * 180.24701 * 10 9 8 39 39 H 1.07999 * 119.91648 * 179.72081 * 11 10 9 40 40 H 1.08000 * 125.85033 * 179.97438 * 15 14 13 41 41 H 1.08004 * 120.13016 * 180.02562 * 19 12 11 42 42 H 1.09002 * 109.88062 * 239.51921 * 20 5 4 43 43 H 1.09005 * 109.88130 * 118.35647 * 20 5 4 44 44 H 0.97004 * 120.00416 * 268.84623 * 23 21 20 45 45 H 0.97003 * 120.00265 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0916 -0.8115 -1.2002 5 7 3.4327 -1.2461 -0.7687 6 6 4.4561 -1.5643 -1.5860 7 8 4.2856 -1.5965 -2.7891 8 6 5.7861 -1.8742 -1.0191 9 6 5.9472 -1.9953 0.3628 10 6 7.1875 -2.2897 0.8918 11 6 8.2781 -2.4551 0.0599 12 6 8.1311 -2.3317 -1.3210 13 6 9.3044 -2.5105 -2.2123 14 7 10.5523 -2.7912 -1.8134 15 6 11.3389 -2.8818 -2.8531 16 7 10.6051 -2.6591 -3.9584 17 1 10.9216 -2.6627 -4.8754 18 7 9.2903 -2.4251 -3.5243 19 6 6.8833 -2.0408 -1.8622 20 6 3.4691 -1.2742 0.7008 21 6 2.0861 -0.8079 1.2023 22 1 2.1892 -0.1706 2.0805 23 7 1.2268 -1.9574 1.4963 24 6 1.2429 -2.5232 2.7432 25 1 1.8894 -2.1222 3.5098 26 6 0.4282 -3.6120 3.0219 27 7 -0.3593 -4.1009 2.0875 28 14 0.4508 -4.3842 4.7226 29 1 1.4772 -5.4566 4.7658 30 1 0.7766 -3.3462 5.7333 31 1 -0.8835 -4.9638 5.0208 32 1 -0.3633 0.4521 0.9229 33 1 -0.3633 0.5732 -0.8530 34 1 -0.3633 -1.0253 -0.0700 35 1 2.1644 -0.1786 -2.0847 36 1 1.4600 -1.6761 -1.4042 37 1 5.0993 -1.8619 1.0182 38 1 7.3071 -2.3865 1.9607 39 1 9.2469 -2.6810 0.4803 40 1 12.3967 -3.0984 -2.8290 41 1 6.7651 -1.9448 -2.9314 42 1 4.2428 -0.5986 1.0654 43 1 3.6664 -2.2887 1.0474 44 1 0.6464 -2.3178 0.8077 45 1 -0.9283 -4.8620 2.2821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:53 Heat of formation + Delta-G solvation = 121.498884 kcal Electronic energy + Delta-G solvation = -28857.923663 eV Core-core repulsion = 24878.572656 eV Total energy + Delta-G solvation = -3979.351006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.34516 -40.34416 -38.58405 -37.39101 -34.12726 -33.49773 -32.53436 -32.04678 -31.06159 -30.56802 -29.97412 -27.91685 -26.35710 -24.47368 -23.88253 -23.52747 -22.44328 -21.85870 -20.79515 -19.50667 -19.30507 -18.63585 -17.56242 -16.76358 -16.32782 -15.91955 -15.76827 -15.47530 -15.31585 -14.75950 -14.42445 -14.29172 -14.00208 -13.79255 -13.61411 -13.12284 -13.04163 -12.85874 -12.53899 -12.46209 -12.32363 -11.96891 -11.66142 -11.50419 -11.24232 -11.12048 -10.92702 -10.74821 -10.64555 -10.40331 -10.34187 -10.27492 -10.22233 -9.92573 -9.73626 -9.64387 -9.01450 -8.99287 -8.66855 -8.26160 -7.09065 -5.86106 -3.16561 0.65965 1.04670 1.52530 2.30573 2.61561 3.18173 3.23312 3.38589 3.43920 3.46011 3.70349 3.96332 4.28602 4.50744 4.55726 4.65487 4.91052 5.00972 5.05204 5.17255 5.27019 5.35087 5.44235 5.47282 5.57600 5.61714 5.73606 5.84475 5.87769 5.88360 5.94862 6.00040 6.15022 6.20053 6.26345 6.32663 6.33801 6.36070 6.41285 6.48468 6.60880 6.68058 6.70406 6.81206 6.92455 7.61251 7.70661 7.84051 8.31329 8.42390 9.43559 9.97962 10.32546 11.35814 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002670 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.807551 B =10484.559518 C =11799.122474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.570 3.430 7 O -0.549 6.549 8 C -0.130 4.130 9 C -0.102 4.102 10 C -0.132 4.132 11 C -0.054 4.054 12 C -0.037 4.037 13 C 0.276 3.724 14 N -0.536 5.536 15 C 0.263 3.737 16 N -0.485 5.485 17 H 0.443 0.557 18 N -0.302 5.302 19 C -0.027 4.027 20 C 0.058 3.942 21 C 0.170 3.830 22 H 0.074 0.926 23 N -0.711 5.711 24 C -0.249 4.249 25 H 0.073 0.927 26 C -0.007 4.007 27 N -0.928 5.928 28 Si 0.907 3.093 29 H -0.289 1.289 30 H -0.281 1.281 31 H -0.292 1.292 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.173 0.827 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.225 0.775 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.338 6.569 -7.438 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.360 3.640 7 O -0.429 6.429 8 C -0.133 4.133 9 C -0.120 4.120 10 C -0.150 4.150 11 C -0.075 4.075 12 C -0.039 4.039 13 C -0.003 4.003 14 N -0.263 5.263 15 C -0.036 4.036 16 N -0.203 5.203 17 H 0.289 0.711 18 N -0.131 5.131 19 C -0.048 4.048 20 C -0.068 4.068 21 C 0.057 3.943 22 H 0.092 0.908 23 N -0.352 5.352 24 C -0.380 4.380 25 H 0.091 0.909 26 C -0.204 4.204 27 N -0.575 5.575 28 Si 0.738 3.262 29 H -0.216 1.216 30 H -0.207 1.207 31 H -0.218 1.218 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.189 0.811 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.241 0.759 41 H 0.159 0.841 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.223 0.777 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.758 6.566 -7.995 22.303 hybrid contribution 0.568 -0.873 0.010 1.041 sum 20.326 5.693 -7.985 22.568 Atomic orbital electron populations 1.21533 0.93262 1.03026 1.00965 1.22714 0.97002 0.98427 0.95269 0.90242 1.22373 0.82597 0.98415 0.97295 1.48253 1.11867 1.65422 1.07579 1.17855 0.83318 0.77232 0.85613 1.90746 1.83978 1.53731 1.14447 1.19773 0.93567 1.05994 0.93956 1.23201 0.99986 0.93550 0.95282 1.21156 0.92187 1.01234 1.00411 1.21391 0.99687 0.94765 0.91630 1.17276 0.88868 1.06255 0.91541 1.22291 0.91962 0.97353 0.88718 1.70511 1.01239 1.23818 1.30765 1.26102 0.99831 0.95923 0.81770 1.48138 1.06491 1.54946 1.10770 0.71137 1.78327 0.96655 1.25537 1.12569 1.21226 0.89838 0.92952 1.00752 1.23778 1.01766 1.02011 0.79201 1.21283 0.88185 0.89957 0.94868 0.90835 1.42456 1.47201 1.32903 1.12626 1.19220 1.19871 1.09879 0.89019 0.90911 1.24759 0.99061 0.98825 0.97774 1.69653 1.28612 1.26748 1.32468 0.86208 0.76937 0.79279 0.83820 1.21647 1.20666 1.21803 0.92058 0.93689 0.91162 0.91191 0.91034 0.81078 0.84638 0.84510 0.75899 0.84116 0.91546 0.89331 0.77695 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.86 37.16 0.33 -1.67 16 2 C -0.11 -1.73 3.53 -88.21 -0.31 -2.04 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.91 6.35 -2.27 -0.01 1.90 16 5 N -0.60 -10.28 3.33 -175.46 -0.58 -10.86 16 6 C 0.57 10.42 7.81 -12.32 -0.10 10.32 16 7 O -0.55 -11.55 16.67 5.31 0.09 -11.46 16 8 C -0.13 -2.06 5.87 -105.01 -0.62 -2.68 16 9 C -0.10 -1.40 8.59 -39.13 -0.34 -1.74 16 10 C -0.13 -1.55 10.02 -39.69 -0.40 -1.95 16 11 C -0.05 -0.66 9.68 -39.17 -0.38 -1.04 16 12 C -0.04 -0.51 5.87 -104.95 -0.62 -1.12 16 13 C 0.28 3.69 7.77 -156.62 -1.22 2.47 16 14 N -0.54 -6.06 10.81 -12.37 -0.13 -6.19 16 15 C 0.26 1.81 13.11 -90.69 -1.19 0.62 16 16 N -0.49 -3.69 7.44 29.52 0.22 -3.47 16 17 H 0.44 1.56 8.96 -182.35 -1.63 -0.07 16 18 N -0.30 -3.86 12.42 32.11 0.40 -3.46 16 19 C -0.03 -0.41 9.22 -38.85 -0.36 -0.77 16 20 C 0.06 0.93 4.61 -3.07 -0.01 0.91 16 21 C 0.17 2.95 3.36 -66.10 -0.22 2.73 16 22 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 23 N -0.71 -15.92 4.55 -51.66 -0.24 -16.15 16 24 C -0.25 -6.28 9.97 -15.06 -0.15 -6.43 16 25 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 26 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 27 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 28 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 31 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 35 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 36 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 37 H 0.17 2.31 2.75 -57.86 -0.16 2.15 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.14 1.45 7.82 -52.49 -0.41 1.04 16 40 H 0.22 0.27 8.06 -52.49 -0.42 -0.15 16 41 H 0.14 2.29 7.44 -52.48 -0.39 1.90 16 42 H 0.07 0.89 6.65 -51.93 -0.35 0.55 16 43 H 0.09 1.58 6.72 -51.93 -0.35 1.23 16 44 H 0.39 9.45 6.21 -40.82 -0.25 9.20 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -34.52 373.17 -11.40 -45.92 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.79 Total: 10.52 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -5.69 Total: -0.76 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.39 Total: -66.09 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.52 -11.40 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.419 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds