Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.91947 * 2 1 4 4 C 1.55131 * 110.90526 * 124.08124 * 2 1 3 5 5 N 1.47431 * 104.72190 * 155.27286 * 4 2 1 6 6 C 1.34773 * 125.64737 * 155.81211 * 5 4 2 7 7 O 1.21546 * 119.99911 * 4.94224 * 6 5 4 8 8 C 1.47860 * 119.99961 * 184.94074 * 6 5 4 9 9 C 1.39662 * 120.08678 * 352.34099 * 8 6 5 10 10 C 1.38016 * 120.09574 * 180.25378 * 9 8 6 11 11 C 1.38165 * 120.27113 * 359.77132 * 10 9 8 12 12 C 1.39409 * 120.17666 * 359.95093 * 11 10 9 13 13 C 1.48415 * 120.05307 * 180.02562 * 12 11 10 14 14 N 1.33976 * 125.65053 * 179.66847 * 13 12 11 15 15 C 1.30682 * 109.77712 * 179.85410 * 14 13 12 16 16 N 1.34519 * 108.29675 * 0.41016 * 15 14 13 17 17 H 0.96993 * 126.74952 * 179.75175 * 16 15 14 18 18 N 1.31491 * 125.64904 * 359.97438 * 13 12 11 19 19 C 1.39098 * 119.89364 * 0.02562 * 12 11 10 20 20 C 1.47024 * 108.70068 * 335.55141 * 5 4 2 21 21 C 1.54317 * 107.27211 * 1.28485 * 20 5 4 22 22 H 1.09007 * 110.71793 * 140.55631 * 21 20 5 23 23 N 1.46497 * 110.72314 * 263.65291 * 21 20 5 24 24 C 1.36938 * 120.00089 * 273.55015 * 23 21 20 25 25 H 1.07996 * 119.99860 * 359.97438 * 24 23 21 26 26 C 1.38813 * 119.99990 * 179.97438 * 24 23 21 27 27 N 1.31612 * 119.99929 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99808 * 179.97438 * 26 24 23 29 29 H 1.48505 * 109.47088 * 60.00262 * 28 26 24 30 30 H 1.48499 * 109.46891 * 179.97438 * 28 26 24 31 31 H 1.48503 * 109.47275 * 300.00006 * 28 26 24 32 32 H 1.09005 * 109.47261 * 183.89883 * 1 2 3 33 33 H 1.08996 * 109.46997 * 303.89642 * 1 2 3 34 34 H 1.08999 * 109.47320 * 63.89806 * 1 2 3 35 35 H 1.08995 * 110.49736 * 36.43244 * 4 2 1 36 36 H 1.08998 * 110.33823 * 274.03420 * 4 2 1 37 37 H 1.08002 * 119.95196 * 359.97438 * 9 8 6 38 38 H 1.07994 * 119.86473 * 179.74660 * 10 9 8 39 39 H 1.08007 * 119.91310 * 179.97438 * 11 10 9 40 40 H 1.07998 * 125.85366 * 180.13899 * 15 14 13 41 41 H 1.08007 * 120.12630 * 179.97438 * 19 12 11 42 42 H 1.09004 * 109.87964 * 120.70672 * 20 5 4 43 43 H 1.08998 * 109.87731 * 241.86874 * 20 5 4 44 44 H 0.96999 * 119.99891 * 93.54842 * 23 21 20 45 45 H 0.97006 * 119.99887 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0835 -0.8121 1.2003 5 7 3.4271 -1.2432 0.7732 6 6 4.4476 -1.5618 1.5938 7 8 4.2737 -1.5922 2.7964 8 6 5.7788 -1.8743 1.0312 9 6 5.9439 -1.9971 -0.3502 10 6 7.1852 -2.2940 -0.8752 11 6 8.2718 -2.4667 -0.0394 12 6 8.1211 -2.3410 1.3408 13 6 9.2902 -2.5265 2.2361 14 7 9.2745 -2.4258 3.5720 15 6 10.4711 -2.6510 4.0465 16 7 11.2962 -2.8961 3.0126 17 1 12.2447 -3.0927 3.0611 18 7 10.5142 -2.8113 1.8491 19 6 6.8733 -2.0415 1.8776 20 6 3.4673 -1.2742 -0.6962 21 6 2.0861 -0.8079 -1.2023 22 1 2.1921 -0.1698 -2.0797 23 7 1.2282 -1.9574 -1.5003 24 6 1.2846 -2.5528 -2.7322 25 1 1.9613 -2.1747 -3.4842 26 6 0.4720 -3.6423 -3.0144 27 7 -0.3522 -4.1033 -2.0978 28 14 0.5486 -4.4540 -4.6951 29 1 1.9236 -4.9593 -4.9386 30 1 -0.4102 -5.5871 -4.7417 31 1 0.1936 -3.4612 -5.7409 32 1 -0.3634 -1.0253 0.0699 33 1 -0.3633 0.5731 0.8530 34 1 -0.3634 0.4521 -0.9228 35 1 1.4524 -1.6783 1.3986 36 1 2.1515 -0.1804 2.0859 37 1 5.0979 -1.8640 -1.0083 38 1 7.3078 -2.3921 -1.9437 39 1 9.2405 -2.6993 -0.4564 40 1 10.7508 -2.6380 5.0895 41 1 6.7522 -1.9436 2.9464 42 1 4.2426 -0.5998 -1.0601 43 1 3.6649 -2.2894 -1.0402 44 1 0.6201 -2.2968 -0.8250 45 1 -0.9198 -4.8650 -2.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 122.078211 kcal Electronic energy + Delta-G solvation = -28870.467229 eV Core-core repulsion = 24891.141344 eV Total energy + Delta-G solvation = -3979.325885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34158 -40.33565 -38.58731 -37.38341 -34.11491 -33.49576 -32.59218 -31.95596 -31.01942 -30.64720 -29.97919 -27.91045 -26.29455 -24.63254 -23.76526 -23.22959 -22.85508 -21.74578 -20.75723 -19.43070 -19.29174 -18.72223 -17.55797 -16.70013 -16.34364 -15.90625 -15.76748 -15.59793 -15.20521 -14.69200 -14.45243 -14.21524 -14.09534 -13.78127 -13.60623 -13.12067 -13.02769 -12.85488 -12.54997 -12.47915 -12.30973 -11.95955 -11.66128 -11.49598 -11.21834 -11.11801 -10.91095 -10.74534 -10.64206 -10.38457 -10.35101 -10.26718 -10.24627 -9.90838 -9.72181 -9.63146 -9.00818 -8.98521 -8.66778 -8.24492 -7.08467 -5.85584 -3.16030 0.64461 1.05442 1.53467 2.29052 2.62915 3.19278 3.26933 3.39014 3.43900 3.45397 3.70098 3.97282 4.29984 4.51037 4.57447 4.65587 4.91164 5.00828 5.05937 5.16313 5.27175 5.35592 5.44169 5.47773 5.58715 5.62068 5.74190 5.82347 5.87493 5.92050 5.95441 6.00774 6.15792 6.20658 6.27809 6.32662 6.34433 6.36823 6.40022 6.48984 6.61979 6.67740 6.71273 6.81694 6.92274 7.61052 7.72306 7.85825 8.32023 8.44562 9.44098 9.98656 10.33252 11.36291 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.002691 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.654777 B =10403.926146 C =11737.331698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.570 3.430 7 O -0.548 6.548 8 C -0.130 4.130 9 C -0.102 4.102 10 C -0.132 4.132 11 C -0.063 4.063 12 C -0.037 4.037 13 C 0.279 3.721 14 N -0.532 5.532 15 C 0.265 3.735 16 N -0.486 5.486 17 H 0.442 0.558 18 N -0.309 5.309 19 C -0.017 4.017 20 C 0.058 3.942 21 C 0.170 3.830 22 H 0.072 0.928 23 N -0.711 5.711 24 C -0.250 4.250 25 H 0.072 0.928 26 C -0.007 4.007 27 N -0.928 5.928 28 Si 0.907 3.093 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.173 0.827 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.225 0.775 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.388 0.612 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.860 6.625 8.028 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.332 5.332 6 C 0.360 3.640 7 O -0.427 6.427 8 C -0.133 4.133 9 C -0.120 4.120 10 C -0.149 4.149 11 C -0.083 4.083 12 C -0.040 4.040 13 C -0.001 4.001 14 N -0.259 5.259 15 C -0.034 4.034 16 N -0.205 5.205 17 H 0.288 0.712 18 N -0.138 5.138 19 C -0.038 4.038 20 C -0.067 4.067 21 C 0.057 3.943 22 H 0.090 0.910 23 N -0.352 5.352 24 C -0.380 4.380 25 H 0.090 0.910 26 C -0.204 4.204 27 N -0.575 5.575 28 Si 0.738 3.262 29 H -0.212 1.212 30 H -0.217 1.217 31 H -0.212 1.212 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.241 0.759 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.223 0.777 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.709 6.495 8.013 22.246 hybrid contribution 0.838 -0.960 -0.368 1.326 sum 20.547 5.536 7.645 22.611 Atomic orbital electron populations 1.21545 0.93326 1.03006 1.01011 1.22658 0.97000 0.98458 0.95244 0.90173 1.22340 0.82555 0.98422 0.97317 1.48266 1.11853 1.65518 1.07534 1.17843 0.83329 0.77243 0.85605 1.90746 1.83876 1.53630 1.14450 1.19818 0.93680 1.05916 0.93926 1.23207 0.99867 0.93531 0.95400 1.21116 0.92221 1.01293 1.00317 1.21363 0.99581 0.95657 0.91748 1.17277 0.89356 1.06270 0.91107 1.22284 0.91451 0.97035 0.89295 1.70581 1.22088 1.24332 1.08935 1.26142 0.85734 0.95039 0.96516 1.48118 1.12659 1.55258 1.04449 0.71215 1.78211 1.03564 1.26402 1.05606 1.21259 0.89527 0.92013 1.01049 1.23763 1.01732 1.02008 0.79238 1.21276 0.88258 0.89948 0.94787 0.91010 1.42452 1.45404 1.32746 1.14642 1.19166 1.18822 1.09569 0.90489 0.90985 1.24754 0.98892 0.98843 0.97883 1.69643 1.27220 1.27348 1.33279 0.86286 0.77262 0.78896 0.83793 1.21176 1.21739 1.21188 0.91183 0.93622 0.92072 0.91005 0.91132 0.81065 0.84705 0.85047 0.75857 0.83583 0.91587 0.89342 0.77669 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.72 3.53 -88.35 -0.31 -2.03 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.91 6.34 -2.41 -0.02 1.90 16 5 N -0.60 -10.27 3.32 -175.63 -0.58 -10.86 16 6 C 0.57 10.40 7.81 -12.32 -0.10 10.30 16 7 O -0.55 -11.46 16.67 5.32 0.09 -11.37 16 8 C -0.13 -2.07 5.87 -105.01 -0.62 -2.69 16 9 C -0.10 -1.41 8.59 -39.13 -0.34 -1.74 16 10 C -0.13 -1.56 10.02 -39.69 -0.40 -1.96 16 11 C -0.06 -0.77 9.68 -39.17 -0.38 -1.15 16 12 C -0.04 -0.52 5.87 -104.95 -0.62 -1.14 16 13 C 0.28 3.73 7.77 -156.63 -1.22 2.51 16 14 N -0.53 -6.60 10.82 -12.38 -0.13 -6.73 16 15 C 0.26 1.96 13.11 -90.70 -1.19 0.77 16 16 N -0.49 -3.53 7.44 29.52 0.22 -3.31 16 17 H 0.44 1.33 8.96 -182.34 -1.63 -0.30 16 18 N -0.31 -3.63 12.42 32.10 0.40 -3.23 16 19 C -0.02 -0.27 9.23 -38.84 -0.36 -0.63 16 20 C 0.06 0.93 4.61 -3.07 -0.01 0.92 16 21 C 0.17 2.96 3.36 -66.10 -0.22 2.74 16 22 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 23 N -0.71 -15.94 4.62 -51.65 -0.24 -16.18 16 24 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 25 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 26 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 27 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 28 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 29 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 32 H 0.07 1.25 6.39 -51.93 -0.33 0.91 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.30 7.99 -51.93 -0.41 0.89 16 36 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 37 H 0.17 2.33 2.75 -57.85 -0.16 2.17 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.39 7.82 -52.48 -0.41 0.98 16 40 H 0.23 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.15 2.38 7.44 -52.48 -0.39 1.99 16 42 H 0.07 0.89 6.65 -51.93 -0.35 0.54 16 43 H 0.09 1.58 6.72 -51.93 -0.35 1.24 16 44 H 0.39 9.44 6.11 -40.82 -0.25 9.19 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -34.43 373.05 -11.40 -45.83 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.79 Total: 10.51 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -5.69 Total: -0.59 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: 0.39 Total: -66.26 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.43 -11.40 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.911 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds