Wall clock time and date at job start Sat Apr 11 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58417 * 2 1 4 4 C 1.53188 * 109.58736 * 120.42270 * 2 1 3 5 5 C 1.53041 * 109.31079 * 174.42389 * 4 2 1 6 6 C 1.53037 * 109.54143 * 298.63636 * 5 4 2 7 7 H 1.09007 * 109.49883 * 301.38304 * 6 5 4 8 8 N 1.46497 * 109.50081 * 181.31761 * 6 5 4 9 9 C 1.34774 * 120.00064 * 155.00195 * 8 6 5 10 10 O 1.21551 * 120.00017 * 0.02562 * 9 8 6 11 11 C 1.47848 * 119.99870 * 179.97438 * 9 8 6 12 12 C 1.40596 * 120.28043 * 0.02562 * 11 9 8 13 13 N 1.30819 * 121.52334 * 179.97438 * 12 11 9 14 14 C 1.33756 * 121.79324 * 0.02562 * 13 12 11 15 15 N 1.33896 * 120.61575 * 180.02562 * 14 13 12 16 16 C 1.31332 * 119.84263 * 179.97438 * 15 14 13 17 17 C 1.39759 * 120.77929 * 0.03976 * 16 15 14 18 18 N 1.31302 * 120.55509 * 359.97438 * 17 16 15 19 19 C 1.33665 * 119.70611 * 0.02562 * 18 17 16 20 20 C 1.38909 * 120.27978 * 179.72130 * 11 9 8 21 21 C 1.53193 * 109.31106 * 61.36420 * 6 5 4 22 22 N 1.46920 * 109.59020 * 239.71766 * 2 1 3 23 23 C 1.36945 * 120.62779 * 6.62189 * 22 2 1 24 24 H 1.07996 * 120.00052 * 330.14127 * 23 22 2 25 25 C 1.38810 * 120.00002 * 150.14262 * 23 22 2 26 26 N 1.31622 * 119.99791 * 344.50280 * 25 23 22 27 27 Si 1.86800 * 120.00151 * 164.50139 * 25 23 22 28 28 H 1.48495 * 109.47137 * 89.99695 * 27 25 23 29 29 H 1.48503 * 109.46982 * 210.00044 * 27 25 23 30 30 H 1.48498 * 109.46975 * 330.00070 * 27 25 23 31 31 H 1.09005 * 109.46704 * 180.28494 * 1 2 3 32 32 H 1.08995 * 109.47223 * 300.28058 * 1 2 3 33 33 H 1.08990 * 109.47039 * 60.28629 * 1 2 3 34 34 H 1.08995 * 109.49874 * 54.47557 * 4 2 1 35 35 H 1.09003 * 109.50427 * 294.37518 * 4 2 1 36 36 H 1.09005 * 109.46029 * 178.61881 * 5 4 2 37 37 H 1.09001 * 109.46489 * 58.66045 * 5 4 2 38 38 H 0.97002 * 119.99981 * 334.99574 * 8 6 5 39 39 H 1.07999 * 119.24201 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.60915 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.71999 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.99494 * 359.97438 * 20 11 9 43 43 H 1.08997 * 109.58653 * 65.15439 * 21 6 5 44 44 H 1.08999 * 109.58707 * 185.57743 * 21 6 5 45 45 H 0.96999 * 119.99934 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7308 1.2445 5 6 3.5675 -0.8493 1.1691 6 6 3.9570 -1.6654 -0.0655 7 1 3.4989 -2.6529 -0.0082 8 7 5.4143 -1.8049 -0.1197 9 6 5.9678 -2.8469 -0.7712 10 8 5.2578 -3.6707 -1.3141 11 6 7.4386 -2.9874 -0.8264 12 6 8.2653 -2.0377 -0.2009 13 7 9.5692 -2.1384 -0.2340 14 6 10.1823 -3.1469 -0.8633 15 7 11.5188 -3.2272 -0.8820 16 6 12.1050 -4.2243 -1.5040 17 6 11.3500 -5.2069 -2.1504 18 7 10.0382 -5.1507 -2.1469 19 6 9.4200 -4.1449 -1.5201 20 6 8.0151 -4.0621 -1.4912 21 6 3.4651 -0.9452 -1.3249 22 7 2.0226 -0.6980 -1.1953 23 6 1.1538 -1.1100 -2.1703 24 1 0.1398 -1.3776 -1.9122 25 6 1.5763 -1.1837 -3.4905 26 7 2.6871 -0.5822 -3.8605 27 14 0.5686 -2.1364 -4.7420 28 1 -0.4252 -1.2297 -5.3708 29 1 1.4688 -2.6857 -5.7875 30 1 -0.1390 -3.2512 -4.0624 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8925 34 1 1.6031 -1.7268 1.2892 35 1 1.7661 -0.1694 2.1367 36 1 3.9379 -1.3472 2.0652 37 1 4.0062 0.1462 1.0995 38 1 5.9810 -1.1473 0.3132 39 1 7.8136 -1.2062 0.3197 40 1 13.1832 -4.2851 -1.5171 41 1 11.8498 -6.0196 -2.6564 42 1 7.4038 -4.8091 -1.9759 43 1 3.9903 0.0039 -1.4317 44 1 3.6519 -1.5689 -2.1991 45 1 2.9821 -0.6333 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071573207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:00 Heat of formation + Delta-G solvation = 76.141709 kcal Electronic energy + Delta-G solvation = -29180.332706 eV Core-core repulsion = 25199.014865 eV Total energy + Delta-G solvation = -3981.317841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00487 -39.93520 -38.39837 -37.52451 -35.35572 -34.59350 -32.87117 -32.27147 -31.78219 -30.47608 -29.85072 -26.78089 -25.80265 -25.41820 -24.80422 -23.11190 -22.39130 -21.75071 -20.51937 -19.63128 -19.21568 -18.57964 -18.00331 -16.75046 -16.42669 -15.90660 -15.74920 -15.41718 -15.12939 -14.98897 -14.49333 -14.15782 -13.83254 -13.78876 -13.49272 -13.39606 -13.18207 -13.05682 -12.78220 -12.42180 -12.16882 -12.09439 -11.90136 -11.49082 -11.15144 -11.07612 -10.92389 -10.70677 -10.58300 -10.42686 -10.28691 -10.02620 -9.92636 -9.65152 -9.58611 -9.53523 -9.47511 -9.10457 -8.67000 -8.43704 -6.62266 -5.75923 -3.20362 -0.41538 -0.12665 1.41467 2.08375 3.06399 3.13259 3.19710 3.41190 3.48944 3.50891 3.63063 3.69780 3.72516 4.20663 4.29836 4.43751 4.52387 4.60592 4.64614 4.88265 5.18862 5.30233 5.33941 5.44126 5.48074 5.54285 5.62407 5.64773 5.92592 5.95871 6.06488 6.24014 6.26529 6.36788 6.41675 6.44544 6.54708 6.59986 6.67708 6.80636 7.02726 7.06184 7.10966 7.26417 7.51834 7.68521 7.70382 7.85786 8.36220 8.49169 9.22977 9.87210 10.42472 11.32364 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002853 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.495315 B = 9811.824421 C =11173.679599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.086 0.914 8 N -0.710 5.710 9 C 0.558 3.442 10 O -0.517 6.517 11 C -0.168 4.168 12 C 0.193 3.807 13 N -0.457 5.457 14 C 0.269 3.731 15 N -0.418 5.418 16 C 0.110 3.890 17 C 0.071 3.929 18 N -0.404 5.404 19 C 0.020 3.980 20 C 0.037 3.963 21 C 0.168 3.832 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.070 0.930 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.278 1.278 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.392 0.608 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.019 0.981 44 H 0.093 0.907 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.759 -4.993 9.097 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.104 0.896 8 N -0.360 5.360 9 C 0.342 3.658 10 O -0.392 6.392 11 C -0.176 4.176 12 C 0.016 3.984 13 N -0.166 5.166 14 C 0.030 3.970 15 N -0.133 5.133 16 C -0.069 4.069 17 C -0.106 4.106 18 N -0.118 5.118 19 C -0.106 4.106 20 C 0.009 3.991 21 C 0.041 3.959 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.088 0.912 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.226 0.774 39 H 0.193 0.807 40 H 0.201 0.799 41 H 0.200 0.800 42 H 0.185 0.815 43 H 0.037 0.963 44 H 0.111 0.889 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.664 -4.859 8.990 18.703 hybrid contribution -0.431 -0.721 -0.998 1.305 sum 15.232 -5.581 7.993 18.084 Atomic orbital electron populations 1.21802 0.95976 1.01391 1.00246 1.20500 0.93124 0.93580 0.87015 0.95679 1.22043 0.94162 1.01389 0.98975 1.21692 0.97576 0.99701 0.96556 1.22113 0.76866 1.01274 0.98637 0.89631 1.46008 1.09132 1.26063 1.54836 1.17726 0.85926 0.82405 0.79696 1.90859 1.62185 1.41964 1.44222 1.21333 0.96120 0.97625 1.02493 1.23333 0.87722 0.95847 0.91515 1.67472 1.10996 1.20973 1.17176 1.20080 0.90921 0.91447 0.94563 1.68332 1.08407 1.21768 1.14820 1.24325 1.02548 0.89036 0.91012 1.24236 0.90128 0.99346 0.96876 1.68615 1.10887 1.19901 1.12421 1.20217 0.95694 0.94703 0.99982 1.21843 0.91464 0.95433 0.90366 1.21075 0.83754 0.96926 0.94159 1.44009 1.02551 1.64813 1.19213 1.19113 0.95055 1.38195 0.85918 0.91242 1.25087 0.97782 0.99257 0.97081 1.69997 1.24059 1.43604 1.16711 0.86341 0.79354 0.80030 0.81313 1.21467 1.21592 1.20386 0.92805 0.94340 0.91966 0.92016 0.92576 0.92913 0.92098 0.77355 0.80669 0.79881 0.79993 0.81486 0.96317 0.88854 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.95 37.16 0.30 -2.20 16 2 C 0.16 3.25 3.50 -67.60 -0.24 3.01 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.03 5.37 -26.61 -0.14 -2.18 16 5 C -0.12 -1.75 5.35 -26.69 -0.14 -1.89 16 6 C 0.12 2.10 2.60 -67.81 -0.18 1.93 16 7 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 8 N -0.71 -10.51 5.03 -54.63 -0.27 -10.79 16 9 C 0.56 9.14 7.74 -12.33 -0.10 9.05 16 10 O -0.52 -10.77 16.05 5.32 0.09 -10.69 16 11 C -0.17 -2.26 5.89 -104.83 -0.62 -2.88 16 12 C 0.19 2.23 10.69 -17.09 -0.18 2.05 16 13 N -0.46 -6.15 10.39 -12.28 -0.13 -6.28 16 14 C 0.27 3.64 7.60 -157.60 -1.20 2.44 16 15 N -0.42 -4.99 10.55 -12.39 -0.13 -5.12 16 16 C 0.11 0.81 11.21 -17.20 -0.19 0.62 16 17 C 0.07 0.52 11.22 -17.21 -0.19 0.33 16 18 N -0.40 -4.64 10.46 -10.77 -0.11 -4.76 16 19 C 0.02 0.27 6.59 -84.78 -0.56 -0.29 16 20 C 0.04 0.50 9.68 -38.38 -0.37 0.13 16 21 C 0.17 3.90 4.86 -3.71 -0.02 3.88 16 22 N -0.58 -14.08 2.99 -164.78 -0.49 -14.57 16 23 C -0.25 -6.80 8.57 -15.06 -0.13 -6.93 16 24 H 0.07 1.82 6.24 -52.49 -0.33 1.49 16 25 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 26 N -0.90 -26.29 11.23 55.49 0.62 -25.67 16 27 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.39 4.28 6.63 -40.82 -0.27 4.01 16 39 H 0.18 1.40 6.38 -52.49 -0.33 1.07 16 40 H 0.18 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.17 2.28 7.70 -52.48 -0.40 1.88 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.58 6.15 -51.93 -0.32 2.26 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -35.58 368.52 -9.72 -45.30 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.77 Total: 2.69 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -4.05 Total: 7.18 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.51 Total: -67.18 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.58 -9.72 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071573207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.446 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds