Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58650 * 2 1 4 4 C 1.53190 * 109.58677 * 120.28349 * 2 1 3 5 5 C 1.53049 * 109.31440 * 174.56451 * 4 2 1 6 6 C 1.53048 * 109.53589 * 298.63486 * 5 4 2 7 7 H 1.08997 * 109.49311 * 181.31202 * 6 5 4 8 8 N 1.46500 * 109.49713 * 301.41295 * 6 5 4 9 9 C 1.34777 * 119.99651 * 205.00201 * 8 6 5 10 10 O 1.21548 * 120.00133 * 359.97438 * 9 8 6 11 11 C 1.47848 * 119.99901 * 179.97438 * 9 8 6 12 12 C 1.40602 * 120.27576 * 359.72575 * 11 9 8 13 13 N 1.30819 * 121.51764 * 179.69116 * 12 11 9 14 14 C 1.33754 * 121.79303 * 0.59195 * 13 12 11 15 15 N 1.33897 * 120.61181 * 179.70769 * 14 13 12 16 16 C 1.31328 * 119.84587 * 180.02562 * 15 14 13 17 17 C 1.39759 * 120.77786 * 359.95553 * 16 15 14 18 18 N 1.31309 * 120.55592 * 0.02562 * 17 16 15 19 19 C 1.33675 * 119.70599 * 0.02562 * 18 17 16 20 20 C 1.38906 * 120.27763 * 179.97438 * 11 9 8 21 21 C 1.53192 * 109.30920 * 61.36337 * 6 5 4 22 22 N 1.46918 * 108.77985 * 305.36131 * 21 6 5 23 23 C 1.36942 * 120.63316 * 233.63578 * 22 21 6 24 24 H 1.07998 * 119.99637 * 150.89262 * 23 22 21 25 25 C 1.38808 * 119.99822 * 330.89093 * 23 22 21 26 26 N 1.31618 * 120.00035 * 160.72660 * 25 23 22 27 27 Si 1.86804 * 119.99940 * 340.72915 * 25 23 22 28 28 H 1.48498 * 109.46932 * 92.33211 * 27 25 23 29 29 H 1.48497 * 109.46797 * 212.33152 * 27 25 23 30 30 H 1.48502 * 109.47149 * 332.33182 * 27 25 23 31 31 H 1.08994 * 109.47050 * 299.99926 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.00481 * 1 2 3 33 33 H 1.09009 * 109.47224 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.50164 * 294.51660 * 4 2 1 35 35 H 1.09004 * 109.50103 * 54.61259 * 4 2 1 36 36 H 1.08997 * 109.45915 * 58.65225 * 5 4 2 37 37 H 1.08999 * 109.46170 * 178.61380 * 5 4 2 38 38 H 0.96995 * 119.99890 * 24.99784 * 8 6 5 39 39 H 1.08000 * 119.24400 * 359.97336 * 12 11 9 40 40 H 1.08002 * 119.61288 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.72305 * 180.02562 * 17 16 15 42 42 H 1.07995 * 120.99681 * 0.02562 * 20 11 9 43 43 H 1.09002 * 109.58575 * 65.15680 * 21 6 5 44 44 H 1.09007 * 109.58204 * 185.43057 * 21 6 5 45 45 H 0.96994 * 120.00055 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8434 1.1729 6 6 3.9604 -1.6609 -0.0600 7 1 5.0449 -1.7625 -0.0988 8 7 3.3466 -2.9888 0.0182 9 6 3.9060 -4.0290 -0.6311 10 8 4.9195 -3.8652 -1.2818 11 6 3.2869 -5.3693 -0.5518 12 6 2.1177 -5.5664 0.2039 13 7 1.5463 -6.7404 0.2859 14 6 2.0495 -7.8138 -0.3334 15 7 1.4483 -9.0057 -0.2286 16 6 1.9556 -10.0498 -0.8427 17 6 3.1190 -9.9338 -1.6083 18 7 3.7272 -8.7761 -1.7272 19 6 3.2294 -7.6999 -1.1102 20 6 3.8583 -6.4452 -1.2191 21 6 3.4685 -0.9436 -1.3210 22 7 2.0254 -0.6991 -1.1936 23 6 1.1584 -1.1152 -2.1686 24 1 0.1414 -1.3730 -1.9125 25 6 1.5869 -1.2057 -3.4858 26 7 0.9169 -1.9421 -4.3467 27 14 3.1145 -0.2823 -4.0366 28 1 4.3014 -1.1647 -3.9027 29 1 2.9602 0.1279 -5.4554 30 1 3.2962 0.9238 -3.1895 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7638 -0.1655 2.1372 35 1 1.6049 -1.7246 1.2922 36 1 4.0046 0.1528 1.1021 37 1 3.9381 -1.3391 2.0703 38 1 2.5376 -3.1194 0.5372 39 1 1.6787 -4.7285 0.7250 40 1 1.4679 -11.0095 -0.7552 41 1 3.5212 -10.8035 -2.1064 42 1 4.7585 -6.3231 -1.8030 43 1 3.9921 0.0064 -1.4288 44 1 3.6599 -1.5673 -2.1943 45 1 1.2160 -2.0050 -5.2671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071573209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = 83.274257 kcal Electronic energy + Delta-G solvation = -30172.322395 eV Core-core repulsion = 26191.313844 eV Total energy + Delta-G solvation = -3981.008551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85478 -40.01563 -38.50130 -37.59604 -35.20792 -34.42678 -32.82703 -32.16875 -31.73451 -30.74493 -30.47433 -26.80041 -25.98041 -25.30794 -24.83367 -23.02058 -22.75188 -21.97212 -20.59446 -19.53370 -19.01469 -18.60730 -17.92166 -16.76244 -16.50621 -15.77676 -15.62215 -15.44715 -15.15596 -14.89758 -14.67693 -14.56596 -13.96534 -13.72638 -13.54273 -13.40921 -13.13780 -12.99630 -12.86345 -12.60362 -12.12873 -12.02867 -11.95839 -11.83492 -11.56142 -11.32226 -11.02702 -10.92465 -10.58363 -10.47389 -10.33887 -10.01711 -9.87453 -9.69954 -9.49710 -9.40460 -9.36174 -8.96786 -8.81680 -8.49393 -6.93661 -5.94204 -3.32158 -0.26726 0.03251 1.55926 2.23221 3.13574 3.26803 3.33840 3.39278 3.50075 3.51682 3.77508 3.83648 3.87417 4.36135 4.45017 4.55152 4.58310 4.73176 4.78143 4.83398 5.02689 5.09075 5.21432 5.23912 5.36642 5.44116 5.62129 5.69771 5.74546 5.87602 5.93462 6.05262 6.10941 6.17344 6.19649 6.25334 6.32035 6.43424 6.44897 6.65321 6.69738 6.83351 6.92100 7.01394 7.20516 7.68031 7.73284 7.96931 8.34587 8.40416 8.93363 9.73335 10.09424 11.21033 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.003710 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.829482 B = 7544.486562 C = 8075.332640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.133 4.133 5 C -0.120 4.120 6 C 0.128 3.872 7 H 0.084 0.916 8 N -0.691 5.691 9 C 0.566 3.434 10 O -0.535 6.535 11 C -0.164 4.164 12 C 0.200 3.800 13 N -0.456 5.456 14 C 0.272 3.728 15 N -0.418 5.418 16 C 0.109 3.891 17 C 0.069 3.931 18 N -0.404 5.404 19 C 0.020 3.980 20 C 0.036 3.964 21 C 0.113 3.887 22 N -0.598 5.598 23 C -0.259 4.259 24 H 0.091 0.909 25 C 0.029 3.971 26 N -0.907 5.907 27 Si 0.874 3.126 28 H -0.285 1.285 29 H -0.305 1.305 30 H -0.271 1.271 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.398 0.602 39 H 0.175 0.825 40 H 0.184 0.816 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -10.407 12.073 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.172 4.172 5 C -0.158 4.158 6 C 0.022 3.978 7 H 0.102 0.898 8 N -0.342 5.342 9 C 0.351 3.649 10 O -0.412 6.412 11 C -0.172 4.172 12 C 0.022 3.978 13 N -0.165 5.165 14 C 0.032 3.968 15 N -0.133 5.133 16 C -0.070 4.070 17 C -0.108 4.108 18 N -0.119 5.119 19 C -0.106 4.106 20 C 0.008 3.992 21 C -0.013 4.013 22 N -0.322 5.322 23 C -0.387 4.387 24 H 0.108 0.892 25 C -0.170 4.170 26 N -0.550 5.550 27 Si 0.704 3.296 28 H -0.212 1.212 29 H -0.233 1.233 30 H -0.196 1.196 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.235 0.765 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.183 0.817 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.294 -10.256 11.970 16.337 hybrid contribution 1.115 0.452 -0.926 1.518 sum 5.409 -9.804 11.045 15.728 Atomic orbital electron populations 1.21803 0.95253 1.01869 1.00473 1.20485 0.93596 0.93465 0.86185 0.95208 1.22084 0.94842 1.01081 0.99211 1.21713 0.97290 1.00207 0.96560 1.21565 0.97317 0.81502 0.97411 0.89790 1.45717 1.29286 1.08278 1.50882 1.17679 0.84092 0.83416 0.79752 1.90780 1.24948 1.84712 1.40801 1.21224 0.98443 0.95706 1.01791 1.23295 0.89105 0.94101 0.91257 1.67469 1.30778 0.97994 1.20265 1.20076 0.90394 0.92451 0.93869 1.68322 1.29412 0.97693 1.17836 1.24300 0.93357 0.98169 0.91211 1.24203 0.93573 0.96365 0.96642 1.68595 1.29449 0.98470 1.15372 1.20187 0.96330 0.94740 0.99359 1.21775 0.97688 0.87999 0.91699 1.21783 0.85826 0.97250 0.96482 1.44399 1.01605 1.65537 1.20706 1.18848 0.95680 1.38585 0.85635 0.89163 1.25288 0.97322 0.98552 0.95885 1.69807 1.41275 1.39277 1.04637 0.87070 0.84000 0.81469 0.77029 1.21206 1.23283 1.19580 0.94121 0.91772 0.92473 0.92145 0.92310 0.90731 0.92185 0.76506 0.80819 0.79958 0.80093 0.81673 0.94853 0.90096 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.95 37.16 0.30 -2.00 16 2 C 0.17 2.94 3.49 -67.60 -0.24 2.71 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -1.79 5.21 -26.61 -0.14 -1.93 16 5 C -0.12 -1.56 5.59 -26.68 -0.15 -1.71 16 6 C 0.13 2.11 2.81 -67.81 -0.19 1.92 16 7 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 8 N -0.69 -11.00 4.87 -54.63 -0.27 -11.27 16 9 C 0.57 9.95 7.74 -12.33 -0.10 9.86 16 10 O -0.53 -11.09 16.05 5.32 0.09 -11.01 16 11 C -0.16 -2.57 5.89 -104.83 -0.62 -3.19 16 12 C 0.20 2.86 10.69 -17.09 -0.18 2.68 16 13 N -0.46 -7.24 10.39 -12.27 -0.13 -7.37 16 14 C 0.27 4.23 7.60 -157.60 -1.20 3.03 16 15 N -0.42 -5.74 10.55 -12.39 -0.13 -5.87 16 16 C 0.11 0.97 11.21 -17.20 -0.19 0.78 16 17 C 0.07 0.61 11.22 -17.21 -0.19 0.42 16 18 N -0.40 -5.25 10.46 -10.77 -0.11 -5.36 16 19 C 0.02 0.30 6.59 -84.78 -0.56 -0.26 16 20 C 0.04 0.56 9.68 -38.38 -0.37 0.19 16 21 C 0.11 2.38 3.80 -3.71 -0.01 2.37 16 22 N -0.60 -12.96 2.67 -164.77 -0.44 -13.40 16 23 C -0.26 -6.77 9.05 -15.06 -0.14 -6.91 16 24 H 0.09 2.49 6.40 -52.49 -0.34 2.16 16 25 C 0.03 0.82 5.24 -17.43 -0.09 0.73 16 26 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 27 Si 0.87 22.65 24.34 -169.99 -4.14 18.51 16 28 H -0.28 -7.47 6.62 56.52 0.37 -7.09 16 29 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 30 H -0.27 -6.78 6.63 56.52 0.37 -6.40 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.21 7.65 -51.93 -0.40 0.81 16 33 H 0.06 1.00 7.43 -51.92 -0.39 0.61 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.78 6.40 -51.93 -0.33 0.44 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.40 5.48 4.80 -40.82 -0.20 5.28 16 39 H 0.17 1.98 6.38 -52.49 -0.33 1.65 16 40 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.17 2.48 7.70 -52.49 -0.40 2.07 16 43 H 0.03 0.70 7.03 -51.93 -0.37 0.34 16 44 H 0.08 2.01 4.62 -51.92 -0.24 1.77 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -35.80 358.54 -8.55 -44.35 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.53 Total: 4.22 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -4.07 Total: 8.68 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -0.30 Total: -70.16 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.80 -8.55 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071573209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.625 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds