Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.58933 * 2 1 4 4 C 1.53185 * 109.58472 * 239.71337 * 2 1 3 5 5 C 1.53046 * 109.31375 * 185.57969 * 4 2 1 6 6 C 1.53039 * 109.53390 * 61.36550 * 5 4 2 7 7 H 1.09008 * 109.49538 * 178.65221 * 6 5 4 8 8 N 1.46504 * 109.49911 * 58.59088 * 6 5 4 9 9 C 1.34774 * 119.99911 * 155.06408 * 8 6 5 10 10 O 1.21557 * 120.00240 * 359.97438 * 9 8 6 11 11 C 1.47849 * 119.99751 * 180.02562 * 9 8 6 12 12 C 1.40597 * 120.27713 * 359.97438 * 11 9 8 13 13 N 1.30820 * 121.51884 * 180.02562 * 12 11 9 14 14 C 1.33757 * 121.80024 * 0.02562 * 13 12 11 15 15 N 1.33885 * 120.62774 * 180.02562 * 14 13 12 16 16 C 1.31327 * 119.85023 * 179.97438 * 15 14 13 17 17 C 1.39760 * 120.77802 * 0.24564 * 16 15 14 18 18 N 1.31313 * 120.55057 * 359.47700 * 17 16 15 19 19 C 1.33665 * 119.70467 * 0.52144 * 18 17 16 20 20 C 1.38905 * 120.28099 * 180.02562 * 11 9 8 21 21 C 1.53189 * 109.34260 * 298.62076 * 6 5 4 22 22 N 1.46931 * 109.58402 * 120.42895 * 2 1 3 23 23 C 1.36943 * 120.62991 * 353.41148 * 22 2 1 24 24 H 1.08002 * 119.99737 * 29.00611 * 23 22 2 25 25 C 1.38803 * 119.99850 * 208.99796 * 23 22 2 26 26 N 1.31620 * 120.00320 * 15.02490 * 25 23 22 27 27 Si 1.86803 * 120.00030 * 195.02602 * 25 23 22 28 28 H 1.48504 * 109.47165 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47387 * 119.99797 * 27 25 23 30 30 H 1.48498 * 109.47198 * 240.00437 * 27 25 23 31 31 H 1.08993 * 109.47158 * 180.28355 * 1 2 3 32 32 H 1.09000 * 109.46961 * 300.28401 * 1 2 3 33 33 H 1.09003 * 109.46543 * 60.28195 * 1 2 3 34 34 H 1.09000 * 109.49927 * 65.63254 * 4 2 1 35 35 H 1.09001 * 109.50080 * 305.53044 * 4 2 1 36 36 H 1.08997 * 109.45791 * 301.34789 * 5 4 2 37 37 H 1.08995 * 109.45085 * 181.37728 * 5 4 2 38 38 H 0.97002 * 119.99586 * 335.06182 * 8 6 5 39 39 H 1.08001 * 119.24313 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.61573 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.72550 * 179.72023 * 17 16 15 42 42 H 1.08006 * 120.99453 * 359.97438 * 20 11 9 43 43 H 1.09000 * 109.58764 * 174.43980 * 21 6 5 44 44 H 1.09002 * 109.58441 * 294.86415 * 21 6 5 45 45 H 0.97002 * 119.99960 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5676 -0.8466 -1.1712 6 6 3.9569 -1.6659 0.0615 7 1 5.0412 -1.7704 0.1012 8 7 3.3405 -2.9925 -0.0185 9 6 3.8962 -4.0341 0.6317 10 8 4.9092 -3.8729 1.2841 11 6 3.2744 -5.3730 0.5506 12 6 2.1031 -5.5662 -0.2027 13 7 1.5324 -6.7400 -0.2908 14 6 2.0315 -7.8147 0.3297 15 7 1.4284 -9.0053 0.2231 16 6 1.9319 -10.0505 0.8384 17 6 3.0911 -9.9360 1.6107 18 7 3.7044 -8.7808 1.7268 19 6 3.2098 -7.7033 1.1094 20 6 3.8419 -6.4505 1.2187 21 6 3.4657 -0.9490 1.3230 22 7 2.0226 -0.7011 1.1936 23 6 1.1536 -1.1162 2.1672 24 1 0.1359 -1.3703 1.9100 25 6 1.5808 -1.2104 3.4845 26 7 2.7039 -0.6327 3.8551 27 14 0.5618 -2.1570 4.7315 28 1 -0.6465 -2.7083 4.0671 29 1 1.3708 -3.2704 5.2891 30 1 0.1510 -1.2454 5.8294 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3632 0.5095 -0.8926 34 1 1.7661 -0.1642 -2.1370 35 1 1.6030 -1.7237 -1.2934 36 1 4.0062 0.1486 -1.0991 37 1 3.9376 -1.3425 -2.0685 38 1 2.5323 -3.1212 -0.5393 39 1 1.6643 -4.7261 -0.7206 40 1 1.4420 -11.0090 0.7502 41 1 3.4879 -10.8058 2.1131 42 1 4.7412 -6.3304 1.8048 43 1 3.6528 -1.5751 2.1954 44 1 3.9910 -0.0002 1.4321 45 1 3.0022 -0.6983 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071573210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = 78.135162 kcal Electronic energy + Delta-G solvation = -30132.968934 eV Core-core repulsion = 26151.737536 eV Total energy + Delta-G solvation = -3981.231398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88446 -39.88142 -38.38335 -37.44539 -35.23601 -34.28247 -32.81958 -32.15623 -31.70833 -30.41288 -29.88997 -26.67601 -25.89750 -25.32935 -24.90345 -23.01086 -22.23975 -21.91991 -20.55848 -19.47556 -18.88707 -18.56406 -17.92120 -16.66794 -16.36282 -15.79340 -15.53621 -15.33883 -15.05689 -14.87804 -14.46085 -14.12093 -13.98566 -13.67386 -13.42006 -13.23401 -13.07987 -12.98450 -12.79080 -12.52793 -12.11136 -11.99250 -11.90251 -11.29352 -11.19759 -11.00719 -10.95330 -10.91413 -10.74893 -10.41086 -10.35691 -9.99486 -9.78097 -9.55355 -9.52035 -9.49273 -9.38157 -8.99176 -8.51205 -8.48491 -6.64035 -5.78083 -3.22091 -0.29366 -0.00068 1.53524 2.21467 3.20368 3.25736 3.35053 3.38186 3.43728 3.44978 3.75493 3.82271 3.86795 4.33218 4.43738 4.47390 4.56525 4.73083 4.78558 5.00142 5.25888 5.28723 5.32734 5.42436 5.45792 5.54838 5.60510 5.74585 5.95679 6.04980 6.08391 6.11839 6.28604 6.31633 6.39746 6.45701 6.55462 6.60526 6.66232 6.80100 7.01208 7.07565 7.17239 7.30995 7.63781 7.65291 7.81131 7.88898 8.45628 8.52744 9.20617 9.84926 10.40353 11.29809 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.003898 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.917431 B = 7182.335350 C = 8021.905361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.689 5.689 9 C 0.562 3.438 10 O -0.531 6.531 11 C -0.164 4.164 12 C 0.197 3.803 13 N -0.458 5.458 14 C 0.270 3.730 15 N -0.418 5.418 16 C 0.108 3.892 17 C 0.069 3.931 18 N -0.404 5.404 19 C 0.020 3.980 20 C 0.034 3.966 21 C 0.161 3.839 22 N -0.583 5.583 23 C -0.250 4.250 24 H 0.069 0.931 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.891 3.109 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.289 1.289 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.395 0.605 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.098 0.902 44 H 0.028 0.972 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -13.044 -10.273 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.339 5.339 9 C 0.346 3.654 10 O -0.409 6.409 11 C -0.171 4.171 12 C 0.020 3.980 13 N -0.166 5.166 14 C 0.030 3.970 15 N -0.133 5.133 16 C -0.071 4.071 17 C -0.108 4.108 18 N -0.119 5.119 19 C -0.106 4.106 20 C 0.006 3.994 21 C 0.034 3.966 22 N -0.307 5.307 23 C -0.380 4.380 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.721 3.279 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.216 1.216 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.231 0.769 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.116 0.884 44 H 0.046 0.954 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.940 -12.825 -10.182 16.402 hybrid contribution -0.236 -0.507 1.132 1.262 sum 0.703 -13.332 -9.050 16.129 Atomic orbital electron populations 1.21802 0.96070 1.01307 1.00194 1.20468 0.92933 0.93672 0.87120 0.95690 1.22079 0.95081 1.00658 0.99240 1.21703 0.97080 1.00266 0.96678 1.21886 0.97085 0.81166 0.98604 0.90260 1.45775 1.29116 1.08655 1.50371 1.17640 0.84327 0.83247 0.80200 1.90792 1.24853 1.84586 1.40677 1.21335 0.98276 0.96056 1.01457 1.23335 0.89292 0.94109 0.91295 1.67473 1.31053 0.97952 1.20156 1.20078 0.90523 0.92470 0.93932 1.68312 1.29354 0.97692 1.17938 1.24297 0.93432 0.98129 0.91256 1.24208 0.93503 0.96422 0.96654 1.68602 1.29270 0.98472 1.15542 1.20207 0.96309 0.94763 0.99341 1.21799 0.97739 0.87968 0.91902 1.21223 0.83794 0.97236 0.94345 1.44088 1.02682 1.64691 1.19202 1.19131 0.94679 1.37995 0.86188 0.91292 1.25028 0.97607 0.99589 0.96925 1.69980 1.23108 1.44318 1.16796 0.86397 0.79756 0.79783 0.81928 1.20309 1.21725 1.21636 0.92897 0.92077 0.94383 0.92672 0.92770 0.90878 0.92861 0.76933 0.80756 0.79975 0.80095 0.81600 0.88360 0.95449 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.16 0.30 -2.06 16 2 C 0.16 3.07 3.50 -67.59 -0.24 2.83 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.92 5.21 -26.61 -0.14 -2.06 16 5 C -0.12 -1.72 5.59 -26.69 -0.15 -1.87 16 6 C 0.12 2.08 2.81 -67.81 -0.19 1.89 16 7 H 0.08 1.43 7.58 -51.92 -0.39 1.04 16 8 N -0.69 -11.28 4.87 -54.63 -0.27 -11.55 16 9 C 0.56 9.96 7.74 -12.33 -0.10 9.86 16 10 O -0.53 -11.21 16.05 5.32 0.09 -11.12 16 11 C -0.16 -2.52 5.89 -104.83 -0.62 -3.14 16 12 C 0.20 2.75 10.69 -17.09 -0.18 2.57 16 13 N -0.46 -7.07 10.39 -12.28 -0.13 -7.20 16 14 C 0.27 4.09 7.60 -157.60 -1.20 2.89 16 15 N -0.42 -5.59 10.55 -12.39 -0.13 -5.72 16 16 C 0.11 0.94 11.21 -17.20 -0.19 0.74 16 17 C 0.07 0.59 11.22 -17.20 -0.19 0.40 16 18 N -0.40 -5.14 10.46 -10.77 -0.11 -5.26 16 19 C 0.02 0.29 6.59 -84.78 -0.56 -0.27 16 20 C 0.03 0.51 9.68 -38.38 -0.37 0.14 16 21 C 0.16 3.64 4.89 -3.68 -0.02 3.62 16 22 N -0.58 -13.21 2.91 -164.72 -0.48 -13.69 16 23 C -0.25 -6.39 8.61 -15.06 -0.13 -6.52 16 24 H 0.07 1.74 6.20 -52.49 -0.33 1.41 16 25 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 26 N -0.90 -25.84 11.14 55.49 0.62 -25.22 16 27 Si 0.89 21.90 29.58 -169.99 -5.03 16.88 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 31 H 0.05 0.92 7.40 -51.93 -0.38 0.53 16 32 H 0.06 1.17 7.66 -51.93 -0.40 0.78 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.39 5.58 4.80 -40.82 -0.20 5.38 16 39 H 0.18 1.94 6.38 -52.49 -0.33 1.61 16 40 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.17 2.47 7.70 -52.48 -0.40 2.06 16 43 H 0.10 2.65 6.07 -51.93 -0.31 2.34 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -34.08 364.84 -9.61 -43.69 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.60 Total: 4.55 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -4.06 Total: 9.14 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.50 Total: -68.63 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.08 -9.61 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071573210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.826 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds