Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.58416 * 2 1 4 4 C 1.53185 * 109.58840 * 239.57159 * 2 1 3 5 5 C 1.53041 * 109.31542 * 185.57992 * 4 2 1 6 6 C 1.53030 * 109.54178 * 61.36158 * 5 4 2 7 7 H 1.08997 * 109.53047 * 178.66913 * 6 5 4 8 8 N 1.46502 * 109.49844 * 58.58637 * 6 5 4 9 9 C 1.34779 * 120.00113 * 155.15816 * 8 6 5 10 10 O 1.21482 * 120.00025 * 0.02562 * 9 8 6 11 11 C 1.48435 * 120.00022 * 180.02562 * 9 8 6 12 12 N 1.33492 * 119.22141 * 0.02562 * 11 9 8 13 13 N 1.28912 * 122.02968 * 180.02562 * 12 11 9 14 14 C 1.33817 * 119.73851 * 359.97438 * 13 12 11 15 15 C 1.40346 * 121.77598 * 180.02562 * 14 13 12 16 16 C 1.36190 * 119.61742 * 179.97438 * 15 14 13 17 17 C 1.39438 * 121.07581 * 359.97438 * 16 15 14 18 18 C 1.36139 * 121.01619 * 0.02562 * 17 16 15 19 19 C 1.40509 * 119.55981 * 359.97438 * 18 17 16 20 20 N 1.32049 * 119.22123 * 180.02562 * 11 9 8 21 21 C 1.53198 * 109.31516 * 298.63825 * 6 5 4 22 22 N 1.46924 * 108.77062 * 54.63201 * 21 6 5 23 23 C 1.36942 * 120.62930 * 126.42287 * 22 21 6 24 24 H 1.08003 * 119.99679 * 209.01372 * 23 22 21 25 25 C 1.38814 * 120.00146 * 29.00732 * 23 22 21 26 26 N 1.31615 * 119.99929 * 15.01680 * 25 23 22 27 27 Si 1.86796 * 119.99903 * 195.02087 * 25 23 22 28 28 H 1.48504 * 109.47309 * 89.99874 * 27 25 23 29 29 H 1.48498 * 109.47127 * 210.00181 * 27 25 23 30 30 H 1.48506 * 109.47173 * 329.99567 * 27 25 23 31 31 H 1.09005 * 109.47035 * 299.71831 * 1 2 3 32 32 H 1.09001 * 109.47372 * 59.71970 * 1 2 3 33 33 H 1.09003 * 109.47236 * 179.72285 * 1 2 3 34 34 H 1.09003 * 109.49453 * 305.52649 * 4 2 1 35 35 H 1.09004 * 109.50103 * 65.62282 * 4 2 1 36 36 H 1.09004 * 109.45752 * 301.33877 * 5 4 2 37 37 H 1.09004 * 109.45745 * 181.38738 * 5 4 2 38 38 H 0.97001 * 119.99845 * 335.16991 * 8 6 5 39 39 H 1.07991 * 120.19193 * 0.02562 * 15 14 13 40 40 H 1.08005 * 119.45740 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.49509 * 180.28561 * 17 16 15 42 42 H 1.07998 * 120.21866 * 179.97438 * 18 17 16 43 43 H 1.08992 * 109.58803 * 174.41994 * 21 6 5 44 44 H 1.09000 * 109.58489 * 294.84743 * 21 6 5 45 45 H 0.97000 * 120.00179 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 6 3.9569 -1.6655 0.0656 7 1 5.0411 -1.7699 0.1063 8 7 3.3405 -2.9924 -0.0109 9 6 3.8953 -4.0319 0.6434 10 8 4.9063 -3.8686 1.2970 11 6 3.2711 -5.3764 0.5655 12 7 2.1607 -5.5384 -0.1576 13 7 1.5736 -6.6813 -0.2621 14 6 2.0806 -7.7480 0.3670 15 6 1.4769 -9.0122 0.2821 16 6 2.0308 -10.0681 0.9401 17 6 3.1909 -9.9153 1.6985 18 6 3.8052 -8.7050 1.8047 19 6 3.2634 -7.5919 1.1401 20 7 3.8273 -6.3839 1.2130 21 6 3.4651 -0.9452 1.3250 22 7 2.0226 -0.6980 1.1954 23 6 1.1538 -1.1098 2.1705 24 1 0.1360 -1.3647 1.9143 25 6 1.5812 -1.1997 3.4881 26 7 2.7045 -0.6211 3.8565 27 14 0.5622 -2.1420 4.7383 28 1 0.9961 -3.5621 4.7613 29 1 0.7530 -1.5442 6.0841 30 1 -0.8729 -2.0690 4.3633 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3634 -1.0277 -0.0050 34 1 1.6030 -1.7270 -1.2890 35 1 1.7660 -0.1696 -2.1366 36 1 4.0061 0.1460 -1.0995 37 1 3.9377 -1.3475 -2.0652 38 1 2.5332 -3.1228 -0.5326 39 1 0.5788 -9.1470 -0.3023 40 1 1.5643 -11.0399 0.8727 41 1 3.6110 -10.7710 2.2061 42 1 4.7030 -8.6011 2.3960 43 1 3.6518 -1.5688 2.1992 44 1 3.9903 0.0039 1.4317 45 1 3.0030 -0.6836 4.7773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = 92.490361 kcal Electronic energy + Delta-G solvation = -30167.309610 eV Core-core repulsion = 26186.700699 eV Total energy + Delta-G solvation = -3980.608910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.13215 -39.55057 -38.29373 -37.47967 -35.39080 -34.15428 -32.77432 -32.31717 -31.27893 -30.50130 -29.83923 -26.83502 -26.10558 -25.57824 -24.84801 -22.84366 -22.17238 -21.84629 -20.43228 -19.50096 -19.20683 -18.67338 -17.54403 -16.45358 -16.24326 -16.13591 -15.48052 -15.16881 -14.99403 -14.62955 -14.30499 -14.04013 -13.87346 -13.52592 -13.20322 -13.17048 -12.87749 -12.69878 -12.57504 -12.48079 -12.27328 -12.10983 -11.84168 -11.66900 -11.21987 -11.12343 -10.93998 -10.83913 -10.70986 -10.34175 -10.29043 -9.96459 -9.89061 -9.86080 -9.50629 -9.43686 -9.36806 -9.04459 -8.43282 -8.42197 -6.57370 -5.71852 -3.15131 -0.48072 -0.04729 1.38631 2.16169 2.89331 3.15691 3.34854 3.39484 3.46205 3.47333 3.67871 3.80329 4.05451 4.30940 4.35339 4.52778 4.62259 4.81555 4.98266 5.21341 5.34350 5.38829 5.39879 5.45002 5.54542 5.57940 5.60717 5.63772 5.82374 6.04186 6.14162 6.15306 6.17449 6.36897 6.39589 6.47405 6.52829 6.66042 6.67819 6.70260 6.88413 7.08909 7.16463 7.36935 7.69468 7.86759 7.90692 8.16083 8.52087 8.58029 9.27031 9.91329 10.46914 11.36169 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.003961 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.377452 B = 7067.004695 C = 7915.656515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.080 0.920 8 N -0.672 5.672 9 C 0.583 3.417 10 O -0.506 6.506 11 C 0.232 3.768 12 N -0.229 5.229 13 N -0.142 5.142 14 C 0.014 3.986 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.076 4.076 18 C -0.085 4.085 19 C 0.132 3.868 20 N -0.397 5.397 21 C 0.160 3.840 22 N -0.583 5.583 23 C -0.247 4.247 24 H 0.069 0.931 25 C 0.006 3.994 26 N -0.899 5.899 27 Si 0.893 3.107 28 H -0.292 1.292 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.407 0.593 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.098 0.902 44 H 0.030 0.970 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -16.335 -10.131 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.044 0.956 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.098 0.902 8 N -0.324 5.324 9 C 0.362 3.638 10 O -0.378 6.378 11 C -0.040 4.040 12 N -0.090 5.090 13 N -0.005 5.005 14 C -0.118 4.118 15 C -0.087 4.087 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.105 4.105 19 C -0.007 4.007 20 N -0.119 5.119 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.377 4.377 24 H 0.087 0.913 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.724 3.276 28 H -0.220 1.220 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.244 0.756 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.410 -15.266 -9.884 18.191 hybrid contribution -0.626 -1.296 1.045 1.779 sum -0.216 -16.562 -8.839 18.774 Atomic orbital electron populations 1.21802 0.96090 1.01319 1.00166 1.20467 0.92958 0.93610 0.87051 0.95648 1.22091 0.95035 1.00989 0.99122 1.21690 0.97220 1.00132 0.96547 1.21962 0.97086 0.80917 0.98898 0.90182 1.45698 1.29445 1.07900 1.49307 1.16871 0.84239 0.81368 0.81305 1.90804 1.24065 1.83065 1.39888 1.24699 0.90992 0.96517 0.91811 1.73976 1.06278 1.15175 1.13598 1.74483 1.20478 0.94227 1.11341 1.21014 0.95761 0.96924 0.98143 1.20799 0.99952 0.89156 0.98836 1.21198 0.95433 0.99508 0.95444 1.21222 0.94558 0.97503 0.96540 1.20946 1.00896 0.90095 0.98552 1.19779 0.92511 0.93074 0.95334 1.69132 1.29448 0.98206 1.15103 1.21221 0.83911 0.97223 0.94284 1.44052 1.02649 1.64889 1.19011 1.19114 0.94673 1.37784 0.86098 0.91349 1.25022 0.97689 0.99673 0.96920 1.69964 1.23128 1.44354 1.16873 0.86428 0.79931 0.79872 0.81408 1.21954 1.21640 1.20422 0.92079 0.94386 0.92870 0.92358 0.92666 0.90786 0.92814 0.75580 0.83235 0.83873 0.83807 0.83116 0.88420 0.95218 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.23 16 2 C 0.17 3.30 3.50 -67.60 -0.24 3.06 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.17 5.21 -26.61 -0.14 -2.31 16 5 C -0.12 -1.87 5.58 -26.69 -0.15 -2.02 16 6 C 0.12 2.26 2.81 -67.81 -0.19 2.07 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.67 -13.03 4.90 -54.45 -0.27 -13.30 16 9 C 0.58 12.33 7.82 -12.06 -0.09 12.24 16 10 O -0.51 -12.11 16.53 5.38 0.09 -12.02 16 11 C 0.23 4.51 7.65 -156.57 -1.20 3.31 16 12 N -0.23 -4.11 10.72 32.10 0.34 -3.76 16 13 N -0.14 -2.26 11.68 32.28 0.38 -1.88 16 14 C 0.01 0.20 6.68 -84.70 -0.57 -0.37 16 15 C -0.07 -0.59 10.00 -39.53 -0.40 -0.98 16 16 C -0.10 -0.60 9.95 -39.87 -0.40 -0.99 16 17 C -0.08 -0.51 9.95 -39.89 -0.40 -0.91 16 18 C -0.09 -0.88 10.01 -39.48 -0.40 -1.28 16 19 C 0.13 1.94 6.61 -84.77 -0.56 1.38 16 20 N -0.40 -7.32 10.22 -9.00 -0.09 -7.41 16 21 C 0.16 3.85 4.89 -3.71 -0.02 3.83 16 22 N -0.58 -14.05 2.91 -164.78 -0.48 -14.53 16 23 C -0.25 -6.66 8.60 -15.06 -0.13 -6.78 16 24 H 0.07 1.82 6.21 -52.48 -0.33 1.49 16 25 C 0.01 0.16 4.96 -17.43 -0.09 0.08 16 26 N -0.90 -26.73 11.14 55.49 0.62 -26.11 16 27 Si 0.89 22.76 29.58 -169.99 -5.03 17.73 16 28 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 31 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.00 7.45 -51.93 -0.39 0.62 16 34 H 0.06 0.97 6.40 -51.93 -0.33 0.63 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.41 7.42 6.08 -40.82 -0.25 7.17 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.10 2.78 6.06 -51.93 -0.31 2.46 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -34.13 367.93 -9.31 -43.44 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.76 Total: 4.21 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -4.65 Total: 8.10 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: 0.50 Total: -67.00 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.13 -9.31 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.932 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds