Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49701 * 181.34645 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21487 * 120.00106 * 359.97438 * 9 8 6 11 11 C 1.48440 * 120.00299 * 179.97438 * 9 8 6 12 12 N 1.33490 * 119.21554 * 359.73790 * 11 9 8 13 13 N 1.28925 * 122.02069 * 179.68951 * 12 11 9 14 14 C 1.33811 * 119.74205 * 0.56807 * 13 12 11 15 15 C 1.40334 * 121.77633 * 179.73838 * 14 13 12 16 16 C 1.36193 * 119.62374 * 179.97438 * 15 14 13 17 17 C 1.39449 * 121.07079 * 0.02562 * 16 15 14 18 18 C 1.36133 * 121.01306 * 359.97438 * 17 16 15 19 19 C 1.40516 * 119.56437 * 0.02562 * 18 17 16 20 20 N 1.32055 * 119.22257 * 179.97438 * 11 9 8 21 21 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 22 22 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 23 23 C 1.36945 * 120.63269 * 6.51524 * 22 2 1 24 24 H 1.07999 * 119.99653 * 330.19743 * 23 22 2 25 25 C 1.38810 * 120.00178 * 150.19385 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48884 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.48482 * 25 23 22 28 28 H 1.48497 * 109.47152 * 60.00445 * 27 25 23 29 29 H 1.48507 * 109.47028 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47373 * 300.00024 * 27 25 23 31 31 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 32 32 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 33 33 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 35 35 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 36 36 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 37 37 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 38 38 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 39 39 H 1.07997 * 120.19154 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.46767 * 179.97438 * 16 15 14 41 41 H 1.07994 * 119.49445 * 180.02562 * 17 16 15 42 42 H 1.07994 * 120.22058 * 179.97438 * 18 17 16 43 43 H 1.09006 * 109.58889 * 65.15964 * 21 6 5 44 44 H 1.09004 * 109.58178 * 185.43292 * 21 6 5 45 45 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7631 -0.0983 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9189 -3.8655 -1.2811 11 6 3.2842 -5.3747 -0.5512 12 7 2.1743 -5.5379 0.1722 13 7 1.5864 -6.6808 0.2738 14 6 2.0982 -7.7483 -0.3500 15 6 1.4966 -9.0132 -0.2640 16 6 2.0548 -10.0699 -0.9173 17 6 3.2174 -9.9168 -1.6719 18 6 3.8297 -8.7057 -1.7790 19 6 3.2834 -7.5919 -1.1192 20 7 3.8450 -6.3829 -1.1937 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1934 23 6 1.1585 -1.1154 -2.1684 24 1 0.1447 -1.3842 -1.9107 25 6 1.5827 -1.1917 -3.4879 26 7 2.6925 -0.5888 -3.8583 27 14 0.5784 -2.1500 -4.7379 28 1 -0.7832 -1.5650 -4.8321 29 1 1.2412 -2.0786 -6.0649 30 1 0.4792 -3.5686 -4.3104 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7639 -0.1654 2.1372 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1528 1.1022 37 1 3.9380 -1.3391 2.0704 38 1 2.5375 -3.1194 0.5374 39 1 0.5962 -9.1481 0.3168 40 1 1.5900 -11.0423 -0.8491 41 1 3.6380 -10.7720 -2.1799 42 1 4.7299 -8.6018 -2.3665 43 1 3.9921 0.0062 -1.4287 44 1 3.6599 -1.5675 -2.1940 45 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = 92.119021 kcal Electronic energy + Delta-G solvation = -30158.852364 eV Core-core repulsion = 26178.227351 eV Total energy + Delta-G solvation = -3980.625013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.13304 -39.55385 -38.29390 -37.47921 -35.39168 -34.15305 -32.76937 -32.31705 -31.27980 -30.49942 -29.85164 -26.83672 -26.10787 -25.57910 -24.84102 -22.84451 -22.17859 -21.84870 -20.43208 -19.50246 -19.20955 -18.67573 -17.54639 -16.45417 -16.24359 -16.13637 -15.47727 -15.16714 -14.99512 -14.63023 -14.30706 -14.04815 -13.87688 -13.53062 -13.20477 -13.16944 -12.87789 -12.69840 -12.57562 -12.47952 -12.27517 -12.11057 -11.84390 -11.67044 -11.21661 -11.12113 -10.94952 -10.84597 -10.69262 -10.35536 -10.30404 -9.96873 -9.89680 -9.86189 -9.50619 -9.44545 -9.37009 -9.04573 -8.43719 -8.41819 -6.56156 -5.72295 -3.15636 -0.48228 -0.04858 1.38514 2.15944 2.89056 3.15318 3.34727 3.39546 3.46243 3.46675 3.67771 3.80031 4.05242 4.30794 4.35258 4.52900 4.62121 4.81447 4.98059 5.21164 5.34214 5.38609 5.39748 5.44919 5.54557 5.57840 5.60549 5.63622 5.82236 6.04043 6.14059 6.15295 6.17448 6.36992 6.39796 6.47443 6.52658 6.66142 6.67540 6.70003 6.88091 7.09196 7.16631 7.36001 7.67531 7.86723 7.90093 8.15832 8.52192 8.57569 9.26905 9.91211 10.47421 11.35968 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.003955 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.317049 B = 7078.353874 C = 7928.613283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.133 4.133 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.080 0.920 8 N -0.672 5.672 9 C 0.583 3.417 10 O -0.506 6.506 11 C 0.232 3.768 12 N -0.229 5.229 13 N -0.142 5.142 14 C 0.014 3.986 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.076 4.076 18 C -0.085 4.085 19 C 0.132 3.868 20 N -0.397 5.397 21 C 0.162 3.838 22 N -0.582 5.582 23 C -0.249 4.249 24 H 0.067 0.933 25 C 0.007 3.993 26 N -0.898 5.898 27 Si 0.894 3.106 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.289 1.289 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.407 0.593 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.030 0.970 44 H 0.095 0.905 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -16.387 10.127 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.173 4.173 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.098 0.902 8 N -0.323 5.323 9 C 0.362 3.638 10 O -0.379 6.379 11 C -0.040 4.040 12 N -0.090 5.090 13 N -0.005 5.005 14 C -0.118 4.118 15 C -0.087 4.087 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.105 4.105 19 C -0.007 4.007 20 N -0.119 5.119 21 C 0.035 3.965 22 N -0.305 5.305 23 C -0.378 4.378 24 H 0.085 0.915 25 C -0.192 4.192 26 N -0.542 5.542 27 Si 0.724 3.276 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.216 1.216 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.244 0.756 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.048 0.952 44 H 0.113 0.887 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.509 -15.316 9.876 18.231 hybrid contribution -0.634 -1.303 -1.040 1.784 sum -0.125 -16.619 8.836 18.822 Atomic orbital electron populations 1.21793 0.96077 1.01333 1.00140 1.20463 0.92949 0.93603 0.87040 0.95675 1.22096 0.95025 1.00998 0.99150 1.21692 0.97222 1.00125 0.96546 1.21961 0.97118 0.80876 0.98907 0.90164 1.45696 1.29262 1.07804 1.49568 1.16873 0.84251 0.81377 0.81278 1.90804 1.23967 1.83124 1.39974 1.24698 0.90967 0.96514 0.91842 1.73982 1.06336 1.15193 1.13510 1.74483 1.20500 0.94235 1.11308 1.21010 0.95742 0.96905 0.98172 1.20798 0.99975 0.89151 0.98820 1.21200 0.95395 0.99511 0.95473 1.21223 0.94574 0.97500 0.96523 1.20944 1.00909 0.90075 0.98566 1.19780 0.92530 0.93079 0.95309 1.69133 1.29435 0.98190 1.15141 1.21181 0.83984 0.97204 0.94141 1.44020 1.02561 1.64788 1.19159 1.19038 0.95100 1.37723 0.85983 0.91496 1.25033 0.97769 0.99445 0.96937 1.69967 1.23922 1.43508 1.16825 0.86508 0.79748 0.80209 0.81132 1.20809 1.21584 1.21598 0.94385 0.92092 0.92866 0.92667 0.92368 0.90779 0.92809 0.75564 0.83236 0.83872 0.83806 0.83116 0.95181 0.88703 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 2 C 0.17 3.31 3.49 -67.60 -0.24 3.07 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.17 5.21 -26.61 -0.14 -2.31 16 5 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 6 C 0.12 2.26 2.81 -67.81 -0.19 2.07 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.67 -13.02 4.90 -54.45 -0.27 -13.29 16 9 C 0.58 12.31 7.82 -12.06 -0.09 12.22 16 10 O -0.51 -12.08 16.53 5.38 0.09 -11.99 16 11 C 0.23 4.50 7.65 -156.57 -1.20 3.30 16 12 N -0.23 -4.11 10.72 32.10 0.34 -3.77 16 13 N -0.14 -2.26 11.68 32.28 0.38 -1.88 16 14 C 0.01 0.20 6.68 -84.71 -0.57 -0.37 16 15 C -0.07 -0.59 10.00 -39.53 -0.40 -0.99 16 16 C -0.10 -0.60 9.95 -39.87 -0.40 -0.99 16 17 C -0.08 -0.51 9.95 -39.89 -0.40 -0.90 16 18 C -0.09 -0.88 10.01 -39.48 -0.40 -1.28 16 19 C 0.13 1.94 6.61 -84.77 -0.56 1.38 16 20 N -0.40 -7.31 10.22 -8.99 -0.09 -7.40 16 21 C 0.16 3.88 4.88 -3.71 -0.02 3.86 16 22 N -0.58 -14.04 2.90 -164.77 -0.48 -14.52 16 23 C -0.25 -6.71 8.58 -15.06 -0.13 -6.84 16 24 H 0.07 1.78 6.25 -52.49 -0.33 1.45 16 25 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 26 N -0.90 -26.70 11.23 55.49 0.62 -26.08 16 27 Si 0.89 22.76 29.58 -169.99 -5.03 17.74 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.84 16 33 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.97 6.40 -51.93 -0.33 0.63 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.41 7.43 6.07 -40.82 -0.25 7.18 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 2.69 6.15 -51.93 -0.32 2.37 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -34.11 368.12 -9.31 -43.41 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.77 Total: 4.13 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -4.65 Total: 8.10 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 0.51 Total: -66.94 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.11 -9.31 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.530 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds