Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21475 * 120.00114 * 359.97438 * 9 8 6 11 11 C 1.48441 * 119.99801 * 180.02562 * 9 8 6 12 12 N 1.33488 * 119.22208 * 359.97438 * 11 9 8 13 13 N 1.28919 * 122.02635 * 180.02562 * 12 11 9 14 14 C 1.33821 * 119.74045 * 359.97438 * 13 12 11 15 15 C 1.40342 * 121.77670 * 180.02562 * 14 13 12 16 16 C 1.36191 * 119.61899 * 179.97438 * 15 14 13 17 17 C 1.39440 * 121.07496 * 0.02562 * 16 15 14 18 18 C 1.36142 * 121.01382 * 359.97438 * 17 16 15 19 19 C 1.40510 * 119.56066 * 359.97438 * 18 17 16 20 20 N 1.32059 * 119.21773 * 179.73399 * 11 9 8 21 21 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 22 22 N 1.46923 * 108.77672 * 305.36978 * 21 6 5 23 23 C 1.36936 * 120.62934 * 233.59047 * 22 21 6 24 24 H 1.07995 * 120.00547 * 149.22205 * 23 22 21 25 25 C 1.38822 * 119.99709 * 329.21595 * 23 22 21 26 26 N 1.31620 * 119.99894 * 346.00001 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.99941 * 25 23 22 28 28 H 1.48494 * 109.47391 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46889 * 120.00367 * 27 25 23 30 30 H 1.48491 * 109.47167 * 239.99841 * 27 25 23 31 31 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 32 32 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 33 33 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 34 34 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 35 35 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 36 36 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 37 37 H 1.09006 * 109.45151 * 58.64645 * 5 4 2 38 38 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 39 39 H 1.07994 * 120.19419 * 359.97438 * 15 14 13 40 40 H 1.07995 * 119.46020 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.49585 * 179.97438 * 17 16 15 42 42 H 1.07994 * 120.21706 * 180.02562 * 18 17 16 43 43 H 1.08998 * 109.58839 * 185.57402 * 21 6 5 44 44 H 1.09005 * 109.58192 * 65.15315 * 21 6 5 45 45 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2569 -3.6684 -1.3185 11 6 7.4435 -2.9889 -0.8292 12 7 8.2090 -2.0770 -0.2256 13 7 9.4961 -2.1475 -0.2395 14 6 10.0987 -3.1600 -0.8739 15 6 11.4965 -3.2788 -0.9156 16 6 12.0635 -4.3278 -1.5736 17 6 11.2776 -5.2885 -2.2090 18 6 9.9187 -5.2072 -2.1905 19 6 9.2972 -4.1398 -1.5208 20 7 7.9686 -4.0173 -1.4700 21 6 3.4650 -0.9453 -1.3250 22 7 2.0226 -0.6980 -1.1954 23 6 1.1538 -1.1099 -2.1704 24 1 0.1443 -1.3920 -1.9102 25 6 1.5706 -1.1649 -3.4934 26 7 2.6879 -0.5715 -3.8566 27 14 0.5458 -2.0812 -4.7582 28 1 -0.6549 -2.6559 -4.1000 29 1 0.1218 -1.1411 -5.8267 30 1 1.3555 -3.1744 -5.3534 31 1 -0.3633 -1.0277 0.0050 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5095 -0.8925 34 1 1.7660 -0.1696 2.1366 35 1 1.6029 -1.7270 1.2891 36 1 3.9378 -1.3475 2.0652 37 1 4.0060 0.1460 1.0993 38 1 5.9812 -1.1499 0.3145 39 1 12.1189 -2.5428 -0.4287 40 1 13.1394 -4.4165 -1.6044 41 1 11.7541 -6.1096 -2.7238 42 1 9.3225 -5.9587 -2.6866 43 1 3.6519 -1.5690 -2.1992 44 1 3.9904 0.0038 -1.4317 45 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = 89.951240 kcal Electronic energy + Delta-G solvation = -29213.991252 eV Core-core repulsion = 25233.272238 eV Total energy + Delta-G solvation = -3980.719015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26766 -39.57618 -38.35636 -37.54263 -35.54660 -34.44699 -32.84404 -32.42571 -31.37860 -30.54880 -29.81594 -26.99953 -26.10562 -25.54520 -24.76035 -22.95625 -22.31964 -21.67715 -20.36403 -19.56264 -19.50559 -18.94270 -17.54021 -16.47055 -16.44791 -16.22575 -15.62971 -15.30348 -15.09893 -14.72113 -14.30819 -14.05572 -13.76257 -13.62134 -13.33140 -13.31856 -12.90305 -12.75873 -12.67162 -12.41139 -12.36487 -12.19157 -11.86346 -11.78426 -11.43248 -11.08931 -10.86091 -10.70115 -10.52494 -10.37673 -10.22348 -10.09822 -9.98166 -9.91009 -9.65510 -9.46029 -9.43185 -9.15317 -8.59174 -8.39520 -6.56233 -5.70992 -3.17123 -0.60588 -0.18394 1.26901 2.03306 2.73458 3.01265 3.20605 3.44541 3.52328 3.53617 3.54525 3.65054 3.90957 4.15570 4.25268 4.51755 4.56614 4.71118 4.83354 5.09145 5.29680 5.36769 5.40165 5.45935 5.48481 5.52551 5.60213 5.71314 5.72984 5.98719 6.03935 6.14610 6.30303 6.31229 6.42410 6.47011 6.50536 6.57161 6.66569 6.74156 6.87249 7.08332 7.16541 7.32359 7.71570 7.75414 7.90032 8.00209 8.40634 8.54391 9.27628 9.91526 10.47585 11.37076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002898 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.536100 B = 9660.449617 C =11028.348491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.086 0.914 8 N -0.693 5.693 9 C 0.581 3.419 10 O -0.490 6.490 11 C 0.229 3.771 12 N -0.234 5.234 13 N -0.142 5.142 14 C 0.016 3.984 15 C -0.067 4.067 16 C -0.093 4.093 17 C -0.075 4.075 18 C -0.085 4.085 19 C 0.133 3.867 20 N -0.394 5.394 21 C 0.168 3.832 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.071 0.929 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.277 1.277 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.404 0.596 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.093 0.907 44 H 0.021 0.979 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.071 -5.812 8.643 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.104 0.896 8 N -0.345 5.345 9 C 0.359 3.641 10 O -0.360 6.360 11 C -0.044 4.044 12 N -0.095 5.095 13 N -0.005 5.005 14 C -0.117 4.117 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.006 4.006 20 N -0.117 5.117 21 C 0.041 3.959 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.202 1.202 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.111 0.889 44 H 0.039 0.961 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.958 -5.715 8.496 20.672 hybrid contribution 0.425 -0.743 -1.012 1.325 sum 18.383 -6.458 7.484 20.873 Atomic orbital electron populations 1.21798 0.95968 1.01371 1.00220 1.20511 0.93101 0.93632 0.87000 0.95610 1.22047 0.94126 1.01374 0.98980 1.21684 0.97481 0.99836 0.96464 1.22174 0.76472 1.01341 0.98891 0.89608 1.45913 1.09150 1.25802 1.53614 1.16946 0.83002 0.83219 0.80910 1.90873 1.60035 1.41770 1.43361 1.24703 0.98330 0.88733 0.92626 1.73952 0.99539 1.21988 1.14028 1.74473 1.02098 1.15267 1.08677 1.21006 0.97281 0.94844 0.98586 1.20802 0.90942 0.98765 0.98344 1.21223 1.01320 0.93304 0.95504 1.21250 0.93169 0.98633 0.96639 1.20970 0.94974 0.96510 0.97982 1.19786 0.89582 0.95520 0.95745 1.69153 1.10750 1.19672 1.12090 1.21087 0.83803 0.97028 0.94024 1.44007 1.02503 1.64795 1.19272 1.19166 0.95418 1.37846 0.85727 0.91187 1.25136 0.97715 0.99200 0.97200 1.70001 1.23652 1.44104 1.16614 0.86257 0.79716 0.79431 0.81585 1.20172 1.21804 1.21518 0.92822 0.94351 0.91974 0.92525 0.92014 0.92830 0.91933 0.76043 0.83183 0.83788 0.83708 0.83009 0.88884 0.96141 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.96 37.16 0.30 -2.27 16 2 C 0.16 3.38 3.50 -67.60 -0.24 3.14 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.14 5.37 -26.62 -0.14 -2.28 16 5 C -0.12 -1.91 5.35 -26.69 -0.14 -2.06 16 6 C 0.12 2.31 2.60 -67.81 -0.18 2.13 16 7 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 8 N -0.69 -12.40 5.07 -54.45 -0.28 -12.68 16 9 C 0.58 11.49 7.82 -12.06 -0.09 11.40 16 10 O -0.49 -11.60 16.53 5.39 0.09 -11.51 16 11 C 0.23 4.00 7.65 -156.56 -1.20 2.80 16 12 N -0.23 -3.67 10.72 32.10 0.34 -3.33 16 13 N -0.14 -1.97 11.68 32.28 0.38 -1.60 16 14 C 0.02 0.19 6.68 -84.70 -0.57 -0.38 16 15 C -0.07 -0.50 10.00 -39.53 -0.40 -0.89 16 16 C -0.09 -0.46 9.95 -39.87 -0.40 -0.86 16 17 C -0.07 -0.41 9.95 -39.89 -0.40 -0.81 16 18 C -0.08 -0.77 10.01 -39.48 -0.40 -1.17 16 19 C 0.13 1.74 6.61 -84.77 -0.56 1.18 16 20 N -0.39 -6.66 10.22 -8.99 -0.09 -6.75 16 21 C 0.17 4.12 4.84 -3.71 -0.02 4.11 16 22 N -0.58 -14.61 2.98 -164.78 -0.49 -15.10 16 23 C -0.25 -6.94 8.54 -15.06 -0.13 -7.07 16 24 H 0.07 1.88 6.27 -52.49 -0.33 1.55 16 25 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 26 N -0.90 -27.04 11.21 55.49 0.62 -26.41 16 27 Si 0.90 22.63 29.58 -169.99 -5.03 17.61 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 31 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 6.17 7.91 -40.82 -0.32 5.85 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 41 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.09 2.70 6.17 -51.93 -0.32 2.38 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -34.84 371.64 -9.43 -44.27 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.93 Total: 2.83 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -4.64 Total: 7.07 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: 0.48 Total: -65.87 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.84 -9.43 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.222 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds