Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70092 * 2 1 4 4 C 1.53194 * 109.58737 * 239.64080 * 2 1 3 5 5 C 1.53037 * 109.31205 * 185.57679 * 4 2 1 6 6 C 1.53349 * 109.60802 * 61.37779 * 5 4 2 7 7 H 1.08997 * 109.47331 * 58.54561 * 6 5 4 8 8 N 1.46503 * 109.68678 * 178.74587 * 6 5 4 9 9 C 1.34778 * 119.99885 * 204.75170 * 8 6 5 10 10 O 1.21484 * 119.99971 * 359.97438 * 9 8 6 11 11 C 1.48431 * 119.99804 * 179.97438 * 9 8 6 12 12 N 1.33497 * 119.22051 * 359.97438 * 11 9 8 13 13 N 1.28916 * 122.02390 * 179.97438 * 12 11 9 14 14 C 1.33813 * 119.74567 * 0.02562 * 13 12 11 15 15 C 1.40337 * 121.78345 * 179.97438 * 14 13 12 16 16 C 1.36186 * 119.62635 * 180.02562 * 15 14 13 17 17 C 1.39441 * 121.07374 * 359.97438 * 16 15 14 18 18 C 1.36141 * 121.01171 * 359.97438 * 17 16 15 19 19 C 1.40509 * 119.56187 * 0.02562 * 18 17 16 20 20 N 1.32060 * 119.22244 * 179.72492 * 11 9 8 21 21 C 1.53193 * 109.14573 * 298.70956 * 6 5 4 22 22 N 1.46920 * 108.89428 * 54.58008 * 21 6 5 23 23 C 1.36936 * 120.63523 * 126.34140 * 22 21 6 24 24 H 1.08003 * 120.00492 * 209.05146 * 23 22 21 25 25 C 1.38815 * 119.99867 * 29.04810 * 23 22 21 26 26 N 1.31620 * 120.00010 * 15.03971 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.03905 * 25 23 22 28 28 H 1.48501 * 109.47164 * 90.00023 * 27 25 23 29 29 H 1.48499 * 109.46965 * 210.00292 * 27 25 23 30 30 H 1.48503 * 109.46892 * 329.99816 * 27 25 23 31 31 H 1.08997 * 109.46874 * 299.65028 * 1 2 3 32 32 H 1.09009 * 109.47020 * 59.64497 * 1 2 3 33 33 H 1.08999 * 109.47431 * 179.64614 * 1 2 3 34 34 H 1.09002 * 109.49760 * 305.53463 * 4 2 1 35 35 H 1.09008 * 109.49324 * 65.59412 * 4 2 1 36 36 H 1.09007 * 109.46011 * 181.38484 * 5 4 2 37 37 H 1.09001 * 109.46052 * 301.35770 * 5 4 2 38 38 H 0.96999 * 119.99678 * 24.74713 * 8 6 5 39 39 H 1.08001 * 120.18427 * 0.02562 * 15 14 13 40 40 H 1.08008 * 119.46250 * 179.97438 * 16 15 14 41 41 H 1.08000 * 119.49537 * 179.97438 * 17 16 15 42 42 H 1.07999 * 120.21697 * 179.97438 * 18 17 16 43 43 H 1.08995 * 109.58974 * 294.71727 * 21 6 5 44 44 H 1.09002 * 109.58422 * 174.43748 * 21 6 5 45 45 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 6 3.9595 -1.6674 0.0655 7 1 3.5008 -2.6544 0.0075 8 7 5.4167 -1.8073 0.1229 9 6 5.9685 -2.8477 0.7784 10 8 5.2574 -3.6692 1.3219 11 6 7.4448 -2.9898 0.8361 12 7 8.2113 -2.0783 0.2329 13 7 9.4984 -2.1485 0.2493 14 6 10.1000 -3.1602 0.8858 15 6 11.4977 -3.2789 0.9302 16 6 12.0637 -4.3270 1.5903 17 6 11.2768 -5.2872 2.2253 18 6 9.9180 -5.2056 2.2051 19 6 9.2975 -4.1384 1.5340 20 7 7.9692 -4.0121 1.4871 21 6 3.4650 -0.9469 1.3237 22 7 2.0226 -0.6995 1.1945 23 6 1.1537 -1.1126 2.1690 24 1 0.1361 -1.3677 1.9124 25 6 1.5809 -1.2035 3.4866 26 7 2.7036 -0.6243 3.8559 27 14 0.5623 -2.1478 4.7357 28 1 0.9974 -3.5675 4.7575 29 1 0.7525 -1.5510 6.0821 30 1 -0.8727 -2.0755 4.3604 31 1 -0.3633 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8869 33 1 -0.3634 -1.0276 -0.0063 34 1 1.6029 -1.7254 -1.2913 35 1 1.7655 -0.1672 -2.1369 36 1 3.9378 -1.3449 -2.0668 37 1 4.0061 0.1473 -1.0991 38 1 5.9844 -1.1512 -0.3108 39 1 12.1208 -2.5431 0.4437 40 1 13.1396 -4.4159 1.6225 41 1 11.7526 -6.1082 2.7411 42 1 9.3210 -5.9567 2.7008 43 1 3.9903 0.0021 1.4317 44 1 3.6521 -1.5696 2.1986 45 1 3.0020 -0.6875 4.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071685794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = 90.574111 kcal Electronic energy + Delta-G solvation = -29221.848006 eV Core-core repulsion = 25241.156001 eV Total energy + Delta-G solvation = -3980.692005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.26585 -39.56746 -38.35225 -37.53732 -35.54532 -34.44045 -32.84718 -32.42658 -31.37710 -30.54907 -29.80187 -26.99988 -26.10556 -25.54540 -24.76153 -22.95418 -22.31160 -21.67899 -20.36298 -19.56096 -19.50060 -18.94221 -17.53895 -16.46798 -16.44767 -16.22557 -15.62659 -15.30171 -15.10093 -14.71961 -14.30209 -14.05473 -13.76128 -13.61764 -13.33662 -13.31693 -12.89980 -12.75182 -12.66929 -12.40612 -12.35713 -12.18990 -11.86894 -11.78302 -11.43707 -11.09182 -10.85202 -10.69318 -10.52385 -10.37516 -10.23063 -10.09658 -9.97876 -9.90705 -9.64751 -9.45482 -9.43540 -9.15184 -8.58943 -8.38408 -6.58595 -5.70341 -3.15005 -0.60392 -0.18270 1.27105 2.03480 2.73570 3.01551 3.20761 3.45964 3.52192 3.53441 3.54694 3.65254 3.91114 4.15712 4.25393 4.51888 4.57090 4.71274 4.83557 5.09296 5.29813 5.36312 5.40226 5.45993 5.48498 5.52294 5.60394 5.71668 5.73121 5.98614 6.04079 6.14416 6.30124 6.31132 6.42005 6.46741 6.50227 6.57375 6.66344 6.74222 6.87447 7.07648 7.16019 7.32808 7.71823 7.77089 7.89785 8.00439 8.40958 8.53806 9.27733 9.92174 10.47176 11.37583 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002907 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.144267 B = 9628.011382 C =11004.614682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.086 0.914 8 N -0.693 5.693 9 C 0.581 3.419 10 O -0.490 6.490 11 C 0.229 3.771 12 N -0.234 5.234 13 N -0.142 5.142 14 C 0.016 3.984 15 C -0.067 4.067 16 C -0.093 4.093 17 C -0.075 4.075 18 C -0.085 4.085 19 C 0.133 3.867 20 N -0.394 5.394 21 C 0.166 3.834 22 N -0.582 5.582 23 C -0.252 4.252 24 H 0.071 0.929 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.901 3.099 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.404 0.596 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.020 0.980 44 H 0.096 0.904 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.040 -5.697 -8.614 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.104 0.896 8 N -0.344 5.344 9 C 0.359 3.641 10 O -0.360 6.360 11 C -0.044 4.044 12 N -0.095 5.095 13 N -0.005 5.005 14 C -0.117 4.117 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.006 4.006 20 N -0.117 5.117 21 C 0.039 3.961 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.089 0.911 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.731 3.269 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.038 0.962 44 H 0.114 0.886 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.928 -5.591 -8.454 20.594 hybrid contribution 0.421 -0.772 0.985 1.321 sum 18.349 -6.363 -7.469 20.808 Atomic orbital electron populations 1.21801 0.95961 1.01381 1.00236 1.20508 0.93086 0.93633 0.87007 0.95612 1.22049 0.94136 1.01380 0.98977 1.21734 0.97449 0.99806 0.96458 1.22214 0.76487 1.01319 0.98875 0.89612 1.45890 1.09131 1.25805 1.53622 1.16944 0.83009 0.83215 0.80911 1.90877 1.59969 1.41783 1.43377 1.24702 0.98320 0.88811 0.92552 1.73956 0.99515 1.21881 1.14151 1.74467 1.02129 1.15311 1.08616 1.21004 0.97278 0.94884 0.98548 1.20800 0.90950 0.98764 0.98342 1.21224 1.01319 0.93305 0.95503 1.21251 0.93161 0.98635 0.96646 1.20971 0.94985 0.96521 0.97958 1.19787 0.89580 0.95506 0.95762 1.69152 1.10780 1.19609 1.12116 1.21111 0.83701 0.97115 0.94207 1.44015 1.02541 1.64690 1.19325 1.19157 0.94707 1.38221 0.86079 0.91096 1.25086 0.97741 0.99444 0.97067 1.69994 1.23346 1.44252 1.16852 0.86316 0.79712 0.80086 0.80815 1.21300 1.21857 1.20427 0.91980 0.94332 0.92800 0.92014 0.92518 0.92849 0.91947 0.76050 0.83186 0.83787 0.83708 0.83008 0.96206 0.88612 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.94 37.16 0.30 -2.27 16 2 C 0.16 3.38 3.50 -67.60 -0.24 3.14 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.14 5.37 -26.61 -0.14 -2.29 16 5 C -0.12 -1.91 5.37 -26.53 -0.14 -2.05 16 6 C 0.12 2.31 2.62 -67.65 -0.18 2.13 16 7 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 8 N -0.69 -12.43 5.08 -54.29 -0.28 -12.70 16 9 C 0.58 11.52 7.82 -12.06 -0.09 11.42 16 10 O -0.49 -11.63 16.53 5.38 0.09 -11.54 16 11 C 0.23 4.01 7.65 -156.56 -1.20 2.81 16 12 N -0.23 -3.67 10.72 32.10 0.34 -3.33 16 13 N -0.14 -1.98 11.68 32.28 0.38 -1.60 16 14 C 0.02 0.19 6.68 -84.71 -0.57 -0.38 16 15 C -0.07 -0.50 10.00 -39.53 -0.40 -0.90 16 16 C -0.09 -0.46 9.95 -39.87 -0.40 -0.86 16 17 C -0.07 -0.41 9.95 -39.89 -0.40 -0.81 16 18 C -0.08 -0.77 10.01 -39.48 -0.40 -1.17 16 19 C 0.13 1.74 6.61 -84.77 -0.56 1.18 16 20 N -0.39 -6.67 10.22 -8.99 -0.09 -6.77 16 21 C 0.17 4.08 4.85 -3.71 -0.02 4.06 16 22 N -0.58 -14.61 2.99 -164.78 -0.49 -15.11 16 23 C -0.25 -6.95 8.60 -15.06 -0.13 -7.08 16 24 H 0.07 1.90 6.21 -52.48 -0.33 1.57 16 25 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 26 N -0.90 -27.07 11.14 55.49 0.62 -26.45 16 27 Si 0.90 22.67 29.58 -169.99 -5.03 17.64 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 32 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 6.19 7.91 -40.82 -0.32 5.86 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.23 8.06 -52.48 -0.42 -0.20 16 41 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -34.85 371.50 -9.43 -44.28 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.93 Total: 2.95 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -4.64 Total: 7.03 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: 0.48 Total: -65.96 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.85 -9.43 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071685794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.853 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds