Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47247 * 2 1 4 4 O 1.21278 * 120.00187 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99819 * 179.97438 * 3 2 1 6 6 C 1.47580 * 134.49338 * 179.97438 * 5 3 2 7 7 C 1.53946 * 86.24073 * 204.69863 * 6 5 3 8 8 N 1.46897 * 113.74257 * 221.88382 * 7 6 5 9 9 C 1.46904 * 110.99848 * 304.30633 * 8 7 6 10 10 C 1.53245 * 109.33995 * 172.74811 * 9 8 7 11 11 N 1.47076 * 108.52015 * 53.82394 * 10 9 8 12 12 C 1.34781 * 120.87885 * 128.79603 * 11 10 9 13 13 O 1.21283 * 120.00190 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99815 * 0.02562 * 12 11 10 15 15 S 1.81007 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00027 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99789 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99601 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99279 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00495 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47078 * 89.99884 * 20 18 16 22 22 H 1.48497 * 109.47419 * 210.00284 * 20 18 16 23 23 H 1.48506 * 109.47127 * 330.00541 * 20 18 16 24 24 C 1.47081 * 118.24154 * 308.81902 * 11 10 9 25 25 C 1.46902 * 111.00114 * 180.02562 * 8 7 6 26 26 C 1.47927 * 134.63065 * 0.08932 * 5 3 2 27 27 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47138 * 300.00542 * 1 2 3 29 29 H 1.09011 * 109.46948 * 59.99905 * 1 2 3 30 30 H 1.09005 * 109.46858 * 239.99561 * 2 1 3 31 31 H 1.09004 * 109.46421 * 120.00520 * 2 1 3 32 32 H 1.09002 * 113.76914 * 90.34174 * 6 5 3 33 33 H 1.09000 * 113.77064 * 319.05647 * 6 5 3 34 34 H 1.09005 * 113.73852 * 90.68768 * 7 6 5 35 35 H 1.09004 * 109.49080 * 292.69931 * 9 8 7 36 36 H 1.08997 * 109.49518 * 52.78253 * 9 8 7 37 37 H 1.09002 * 109.62629 * 294.12217 * 10 9 8 38 38 H 1.08991 * 109.63056 * 173.53427 * 10 9 8 39 39 H 1.08994 * 109.47625 * 299.99869 * 14 12 11 40 40 H 1.09000 * 109.47074 * 60.00334 * 14 12 11 41 41 H 0.97004 * 120.00002 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.62835 * 291.47433 * 24 11 10 43 43 H 1.09004 * 109.78869 * 170.99135 * 24 11 10 44 44 H 1.09007 * 109.48653 * 307.20908 * 25 8 7 45 45 H 1.09001 * 109.49363 * 67.29171 * 25 8 7 46 46 H 1.09004 * 113.77332 * 40.99310 * 26 5 3 47 47 H 1.08998 * 113.87432 * 269.61195 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.1820 2.8909 0.0002 7 6 5.2834 2.0271 -0.6406 8 7 6.6249 2.2812 -0.0985 9 6 6.9791 3.7022 -0.2146 10 6 8.2992 3.9578 0.5203 11 7 9.3094 3.0209 0.0057 12 6 10.5113 3.4622 -0.4156 13 8 11.3324 2.6756 -0.8374 14 6 10.8347 4.9331 -0.3624 15 16 12.5101 5.2055 -0.9911 16 6 12.6209 6.9556 -0.8186 17 1 11.7860 7.5128 -0.4202 18 6 13.7808 7.6180 -1.1959 19 7 13.8632 8.9254 -1.0675 20 14 15.2246 6.6543 -1.8857 21 1 15.0954 6.5582 -3.3621 22 1 16.4919 7.3486 -1.5438 23 1 15.2341 5.2897 -1.2999 24 6 8.9733 1.5897 -0.0375 25 6 7.6268 1.4276 -0.7509 26 6 4.5715 0.8218 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5140 0.8900 32 1 4.4319 3.2525 0.9977 33 1 3.8029 3.6759 -0.6541 34 1 5.2593 2.0227 -1.7304 35 1 7.0919 3.9641 -1.2667 36 1 6.1916 4.3108 0.2297 37 1 8.1605 3.7958 1.5892 38 1 8.6254 4.9824 0.3416 39 1 10.1221 5.4844 -0.9758 40 1 10.7728 5.2817 0.6685 41 1 14.6737 9.3885 -1.3315 42 1 8.8994 1.2001 0.9779 43 1 9.7445 1.0458 -0.5831 44 1 7.3090 0.3864 -0.6954 45 1 7.7304 1.7216 -1.7954 46 1 4.5021 -0.0463 -0.6560 47 1 4.9373 0.5739 0.9959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073540504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -21.573869 kcal Electronic energy + Delta-G solvation = -26994.989918 eV Core-core repulsion = 23112.586011 eV Total energy + Delta-G solvation = -3882.403906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00245 -39.93015 -38.68365 -37.14174 -34.19994 -33.20452 -32.46329 -31.81374 -30.01076 -29.13544 -26.94225 -26.58301 -25.62677 -24.26594 -23.69053 -21.92500 -21.03032 -19.40826 -19.17060 -17.87611 -17.59536 -17.16729 -16.50049 -16.25299 -15.77307 -15.68098 -15.54080 -15.26931 -14.98433 -14.79026 -14.13832 -13.83582 -13.80258 -13.74274 -13.42482 -13.17098 -13.03863 -12.82594 -12.76996 -12.61852 -12.45690 -12.16420 -12.02270 -11.80591 -11.62888 -11.57923 -11.41237 -11.28850 -11.07967 -11.03087 -10.61635 -10.20373 -9.88269 -9.53178 -9.23098 -9.03302 -9.00491 -8.57311 -8.52247 -6.95127 -6.31261 -4.03405 2.19554 2.29465 2.65291 2.87072 3.12442 3.30978 3.40466 3.48376 3.56025 3.69280 3.95703 4.30537 4.41854 4.45303 4.55895 4.58440 4.62522 4.66408 4.73127 4.83677 4.92088 4.93745 5.00737 5.04359 5.06377 5.07968 5.11679 5.15020 5.26351 5.28611 5.38986 5.42460 5.46592 5.49343 5.58045 5.65562 5.70376 5.78830 5.81402 5.94328 6.40336 6.50758 6.53634 7.22299 7.40362 7.73411 7.91645 8.37358 8.38976 9.14899 10.77895 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.001855 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.357449 B =15087.412616 C =15747.109997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.536 3.464 4 O -0.540 6.540 5 N -0.648 5.648 6 C 0.114 3.886 7 C 0.042 3.958 8 N -0.525 5.525 9 C 0.038 3.962 10 C 0.113 3.887 11 N -0.621 5.621 12 C 0.534 3.466 13 O -0.519 6.519 14 C -0.122 4.122 15 S -0.143 6.143 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.119 3.881 25 C 0.042 3.958 26 C 0.115 3.885 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.027 -19.529 3.418 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.326 3.674 4 O -0.417 6.417 5 N -0.385 5.385 6 C -0.008 4.008 7 C -0.067 4.067 8 N -0.251 5.251 9 C -0.090 4.090 10 C -0.011 4.011 11 N -0.358 5.358 12 C 0.322 3.678 13 O -0.394 6.394 14 C -0.272 4.272 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.004 4.004 25 C -0.086 4.086 26 C -0.008 4.008 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.351 -20.185 3.262 30.293 hybrid contribution -0.235 1.054 -0.628 1.250 sum -22.587 -19.131 2.634 29.717 Atomic orbital electron populations 1.21548 0.92847 1.01724 1.03435 1.21576 0.98534 0.93318 1.04307 1.20489 0.79738 0.91947 0.75240 1.90723 1.53997 1.46915 1.50061 1.49922 1.03986 1.10634 1.73990 1.23226 0.86390 0.89584 1.01620 1.23666 0.88220 0.96897 0.97960 1.62142 1.00784 1.05913 1.56238 1.22537 0.97890 0.88532 1.00076 1.21831 0.86529 0.94151 0.98570 1.48130 1.14880 1.07562 1.65213 1.20312 0.80691 0.90569 0.76204 1.90690 1.46709 1.57048 1.44907 1.23305 1.04008 0.94331 1.05583 1.84805 1.11829 1.10892 1.84112 1.22303 1.05563 0.89133 1.49929 0.89382 1.24707 0.97992 0.94495 0.94069 1.69937 1.28536 1.07162 1.45965 0.86738 0.82063 0.82320 0.80746 1.19236 1.19913 1.15927 1.21593 0.95370 0.82124 1.01314 1.22521 0.91849 0.97762 0.96502 1.23333 0.80893 0.94663 1.01874 0.91909 0.91941 0.91942 0.89021 0.88935 0.88703 0.89997 0.90144 0.93668 0.89196 0.90422 0.88651 0.88628 0.88433 0.91926 0.90922 0.88510 0.89475 0.93892 0.89989 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.14 -0.75 6.18 -27.89 -0.17 -0.93 16 3 C 0.54 4.92 8.06 -10.99 -0.09 4.84 16 4 O -0.54 -7.27 16.71 5.56 0.09 -7.18 16 5 N -0.65 -4.79 3.62 -177.44 -0.64 -5.44 16 6 C 0.11 0.79 7.26 -2.97 -0.02 0.76 16 7 C 0.04 0.24 3.39 -69.59 -0.24 0.01 16 8 N -0.53 -3.57 4.60 -227.90 -1.05 -4.62 16 9 C 0.04 0.29 5.46 -3.70 -0.02 0.27 16 10 C 0.11 1.06 6.50 -3.60 -0.02 1.04 16 11 N -0.62 -7.75 3.01 -172.46 -0.52 -8.27 16 12 C 0.53 9.23 7.73 -10.98 -0.08 9.15 16 13 O -0.52 -10.86 15.32 5.56 0.09 -10.77 16 14 C -0.12 -2.29 4.52 36.00 0.16 -2.12 16 15 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 16 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.25 13.97 55.49 0.78 -25.48 16 20 Si 0.86 21.56 27.74 -169.99 -4.71 16.84 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 24 C 0.12 1.20 6.59 -3.60 -0.02 1.18 16 25 C 0.04 0.31 5.59 -3.70 -0.02 0.29 16 26 C 0.12 0.53 8.30 -2.80 -0.02 0.51 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.10 -51.92 -0.42 0.02 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.63 7.84 -51.93 -0.41 0.22 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.54 6.76 -51.93 -0.35 0.19 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.92 6.02 -51.93 -0.31 0.61 16 39 H 0.10 1.67 7.66 -51.92 -0.40 1.27 16 40 H 0.10 1.71 8.00 -51.92 -0.42 1.29 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.10 1.13 7.07 -51.93 -0.37 0.76 16 44 H 0.09 0.46 8.01 -51.93 -0.42 0.05 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -36.12 392.25 -9.78 -45.91 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.74 Total: -4.06 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.01 Total: 2.70 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -1.44 Total: -43.80 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.12 -9.78 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073540504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.335 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds