Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47247 * 2 1 4 4 O 1.21278 * 120.00187 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99819 * 179.97438 * 3 2 1 6 6 C 1.47580 * 134.49338 * 179.97438 * 5 3 2 7 7 C 1.53946 * 86.24073 * 204.69863 * 6 5 3 8 8 N 1.46897 * 113.74257 * 221.88382 * 7 6 5 9 9 C 1.46904 * 110.99848 * 304.30633 * 8 7 6 10 10 C 1.53245 * 109.33995 * 172.74811 * 9 8 7 11 11 N 1.47076 * 108.52015 * 53.82394 * 10 9 8 12 12 C 1.34781 * 120.87885 * 128.79603 * 11 10 9 13 13 O 1.21283 * 120.00190 * 180.02562 * 12 11 10 14 14 C 1.50699 * 119.99815 * 0.02562 * 12 11 10 15 15 S 1.81007 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00027 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99789 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99601 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99279 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00495 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47078 * 89.99884 * 20 18 16 22 22 H 1.48497 * 109.47419 * 210.00284 * 20 18 16 23 23 H 1.48506 * 109.47127 * 330.00541 * 20 18 16 24 24 C 1.47081 * 118.24154 * 308.81902 * 11 10 9 25 25 C 1.46902 * 111.00114 * 180.02562 * 8 7 6 26 26 C 1.47927 * 134.63065 * 0.08932 * 5 3 2 27 27 H 1.08998 * 109.47712 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47138 * 300.00542 * 1 2 3 29 29 H 1.09011 * 109.46948 * 59.99905 * 1 2 3 30 30 H 1.09005 * 109.46858 * 239.99561 * 2 1 3 31 31 H 1.09004 * 109.46421 * 120.00520 * 2 1 3 32 32 H 1.09002 * 113.76914 * 90.34174 * 6 5 3 33 33 H 1.09000 * 113.77064 * 319.05647 * 6 5 3 34 34 H 1.09005 * 113.73852 * 90.68768 * 7 6 5 35 35 H 1.09004 * 109.49080 * 292.69931 * 9 8 7 36 36 H 1.08997 * 109.49518 * 52.78253 * 9 8 7 37 37 H 1.09002 * 109.62629 * 294.12217 * 10 9 8 38 38 H 1.08991 * 109.63056 * 173.53427 * 10 9 8 39 39 H 1.08994 * 109.47625 * 299.99869 * 14 12 11 40 40 H 1.09000 * 109.47074 * 60.00334 * 14 12 11 41 41 H 0.97004 * 120.00002 * 180.02562 * 19 18 16 42 42 H 1.09009 * 109.62835 * 291.47433 * 24 11 10 43 43 H 1.09004 * 109.78869 * 170.99135 * 24 11 10 44 44 H 1.09007 * 109.48653 * 307.20908 * 25 8 7 45 45 H 1.09001 * 109.49363 * 67.29171 * 25 8 7 46 46 H 1.09004 * 113.77332 * 40.99310 * 26 5 3 47 47 H 1.08998 * 113.87432 * 269.61195 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.1820 2.8909 0.0002 7 6 5.2834 2.0271 -0.6406 8 7 6.6249 2.2812 -0.0985 9 6 6.9791 3.7022 -0.2146 10 6 8.2992 3.9578 0.5203 11 7 9.3094 3.0209 0.0057 12 6 10.5113 3.4622 -0.4156 13 8 11.3324 2.6756 -0.8374 14 6 10.8347 4.9331 -0.3624 15 16 12.5101 5.2055 -0.9911 16 6 12.6209 6.9556 -0.8186 17 1 11.7860 7.5128 -0.4202 18 6 13.7808 7.6180 -1.1959 19 7 13.8632 8.9254 -1.0675 20 14 15.2246 6.6543 -1.8857 21 1 15.0954 6.5582 -3.3621 22 1 16.4919 7.3486 -1.5438 23 1 15.2341 5.2897 -1.2999 24 6 8.9733 1.5897 -0.0375 25 6 7.6268 1.4276 -0.7509 26 6 4.5715 0.8218 -0.0005 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5140 0.8900 32 1 4.4319 3.2525 0.9977 33 1 3.8029 3.6759 -0.6541 34 1 5.2593 2.0227 -1.7304 35 1 7.0919 3.9641 -1.2667 36 1 6.1916 4.3108 0.2297 37 1 8.1605 3.7958 1.5892 38 1 8.6254 4.9824 0.3416 39 1 10.1221 5.4844 -0.9758 40 1 10.7728 5.2817 0.6685 41 1 14.6737 9.3885 -1.3315 42 1 8.8994 1.2001 0.9779 43 1 9.7445 1.0458 -0.5831 44 1 7.3090 0.3864 -0.6954 45 1 7.7304 1.7216 -1.7954 46 1 4.5021 -0.0463 -0.6560 47 1 4.9373 0.5739 0.9959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073540504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = -47.805747 kcal Electronic energy + Delta-G solvation = -26996.127417 eV Core-core repulsion = 23112.586011 eV Total energy + Delta-G solvation = -3883.541406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63631 -40.94897 -39.50148 -38.03480 -35.13130 -34.67162 -33.71638 -32.64509 -30.99741 -30.09528 -27.90982 -27.49793 -27.26272 -24.80957 -24.40181 -22.77524 -21.65730 -20.41006 -19.89785 -19.53362 -18.43834 -18.09097 -17.31061 -17.19974 -16.97087 -16.78774 -16.68129 -16.28362 -15.91547 -15.71737 -15.42042 -14.94669 -14.90669 -14.65167 -14.43954 -14.27870 -13.89963 -13.59292 -13.52945 -13.37584 -13.29380 -13.21311 -13.02370 -12.97784 -12.67692 -12.64300 -12.49667 -12.22332 -12.13596 -12.05901 -11.86226 -11.63491 -11.17350 -10.93594 -10.88352 -10.52370 -9.92816 -9.72703 -9.37640 -9.00303 -8.51628 -6.22685 0.97550 1.31108 1.45809 1.51842 1.53880 1.58136 1.76185 2.06762 2.24835 2.66959 2.81589 2.86753 3.19159 3.49259 3.52077 3.86254 3.98202 4.02440 4.09098 4.15739 4.18145 4.23951 4.26933 4.31126 4.40688 4.42635 4.47316 4.54289 4.58013 4.63142 4.66581 4.76494 4.82592 4.87070 4.89649 4.98279 5.01542 5.05113 5.09636 5.32899 5.48436 5.70540 5.88329 5.92933 6.11203 6.26521 6.67102 6.93617 7.07867 7.10315 8.60629 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.001855 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.357449 B =15087.412616 C =15747.109997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.525 3.475 4 O -0.596 6.596 5 N -0.651 5.651 6 C 0.106 3.894 7 C 0.050 3.950 8 N -0.519 5.519 9 C 0.042 3.958 10 C 0.107 3.893 11 N -0.609 5.609 12 C 0.535 3.465 13 O -0.563 6.563 14 C -0.107 4.107 15 S -0.177 6.177 16 C -0.529 4.529 17 H 0.063 0.937 18 C 0.047 3.953 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.237 1.237 24 C 0.115 3.885 25 C 0.051 3.949 26 C 0.125 3.875 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.277 0.723 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.029 0.971 46 H 0.108 0.892 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.858 -22.278 3.857 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.317 3.683 4 O -0.478 6.478 5 N -0.387 5.387 6 C -0.016 4.016 7 C -0.059 4.059 8 N -0.245 5.245 9 C -0.086 4.086 10 C -0.016 4.016 11 N -0.343 5.343 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.258 4.258 15 S 0.050 5.950 16 C -0.676 4.676 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.007 4.007 25 C -0.077 4.077 26 C 0.003 3.997 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.048 0.952 46 H 0.126 0.874 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.206 -22.955 3.723 32.853 hybrid contribution -0.147 1.905 -0.686 2.030 sum -23.353 -21.049 3.037 31.586 Atomic orbital electron populations 1.21553 0.93640 1.02690 1.01729 1.21628 0.97811 0.91087 1.06424 1.21231 0.79869 0.92938 0.74281 1.90694 1.55512 1.48760 1.52794 1.50055 1.04235 1.11597 1.72769 1.23300 0.86890 0.89688 1.01763 1.23577 0.87114 0.97357 0.97868 1.62153 1.01068 1.05196 1.56061 1.22492 0.97319 0.89570 0.99262 1.22084 0.86413 0.93321 0.99755 1.48159 1.13605 1.09370 1.63170 1.19978 0.81923 0.89299 0.76578 1.90674 1.48497 1.57558 1.47439 1.23278 0.99919 0.96405 1.06157 1.84714 1.17247 1.08048 1.84992 1.22450 1.04857 0.91054 1.49267 0.91913 1.25548 1.00544 0.95377 0.94428 1.70015 1.29667 1.08565 1.47149 0.85876 0.79456 0.80966 0.80130 1.18760 1.18336 1.16059 1.21808 0.96318 0.80071 1.02501 1.22467 0.90517 0.99569 0.95194 1.23494 0.78642 0.94583 1.02956 0.89474 0.93687 0.93705 0.86664 0.86643 0.88294 0.91242 0.90195 0.94815 0.87400 0.88598 0.89058 0.87270 0.87047 0.91384 0.89128 0.90257 0.86344 0.95222 0.87357 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 71.98 0.66 -0.83 16 2 C -0.13 -1.09 6.18 29.85 0.18 -0.91 16 3 C 0.52 9.00 8.06 87.65 0.71 9.71 16 4 O -0.60 -16.37 16.71 -3.02 -0.05 -16.42 16 5 N -0.65 -8.16 3.62 -833.68 -3.02 -11.17 16 6 C 0.11 1.27 7.26 86.48 0.63 1.90 16 7 C 0.05 0.42 3.39 46.54 0.16 0.58 16 8 N -0.52 -5.35 4.60 -874.96 -4.03 -9.38 16 9 C 0.04 0.54 5.46 86.38 0.47 1.01 16 10 C 0.11 1.76 6.50 86.35 0.56 2.32 16 11 N -0.61 -14.09 3.01 -817.91 -2.46 -16.55 16 12 C 0.53 18.06 7.73 87.66 0.68 18.74 16 13 O -0.56 -23.50 15.32 -3.04 -0.05 -23.55 16 14 C -0.11 -3.96 4.52 71.24 0.32 -3.64 16 15 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 16 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 17 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 18 C 0.05 2.71 5.50 84.86 0.47 3.18 16 19 N -0.92 -55.39 13.97 21.65 0.30 -55.08 16 20 Si 0.91 44.68 27.74 68.60 1.90 46.58 16 21 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 24 C 0.12 2.04 6.59 86.35 0.57 2.61 16 25 C 0.05 0.59 5.59 86.38 0.48 1.08 16 26 C 0.12 0.64 8.30 86.41 0.72 1.36 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.04 0.63 8.10 -2.38 -0.02 0.61 16 30 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.10 1.11 7.84 -2.39 -0.02 1.09 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 1.03 6.76 -2.39 -0.02 1.02 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.60 6.02 -2.39 -0.01 1.59 16 39 H 0.11 3.74 7.66 -2.40 -0.02 3.72 16 40 H 0.11 3.81 8.00 -2.40 -0.02 3.79 16 41 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.08 1.75 7.07 -2.38 -0.02 1.73 16 44 H 0.12 0.70 8.01 -2.38 -0.02 0.68 16 45 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -81.42 392.25 -0.24 -81.66 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.92 Total: 6.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.29 Total: 7.29 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -9.20 Total: -92.18 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.10 Total: -39.97 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -81.42 -0.24 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073540504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.852 kcal (2) G-P(sol) polarization free energy of solvation -81.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds