Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.64502 * 2 1 4 4 C 1.54326 * 110.72069 * 236.66040 * 2 1 3 5 5 N 1.47018 * 107.27220 * 219.44092 * 4 2 1 6 6 C 1.36941 * 125.64954 * 178.91544 * 5 4 2 7 7 H 1.07997 * 120.00034 * 341.53729 * 6 5 4 8 8 C 1.38813 * 119.99951 * 161.52658 * 6 5 4 9 9 N 1.31612 * 119.99736 * 157.63042 * 8 6 5 10 10 Si 1.86798 * 120.00122 * 337.63016 * 8 6 5 11 11 H 1.48500 * 109.47041 * 84.53335 * 10 8 6 12 12 H 1.48495 * 109.47370 * 204.53589 * 10 8 6 13 13 H 1.48504 * 109.47118 * 324.53905 * 10 8 6 14 14 C 1.47428 * 108.70579 * 358.94739 * 5 4 2 15 15 C 1.54911 * 104.82778 * 24.12055 * 14 5 4 16 16 H 1.09004 * 111.03205 * 81.08837 * 15 14 5 17 17 N 1.46500 * 111.00038 * 204.91537 * 15 14 5 18 18 C 1.34779 * 120.00388 * 267.19573 * 17 15 14 19 19 O 1.21617 * 119.99599 * 0.02562 * 18 17 15 20 20 C 1.47318 * 120.00315 * 180.02562 * 18 17 15 21 21 C 1.37917 * 126.80249 * 359.97438 * 20 18 17 22 22 N 1.34197 * 107.89633 * 180.02562 * 21 20 18 23 23 H 0.96991 * 125.16799 * 179.97438 * 22 21 20 24 24 N 1.39778 * 109.66219 * 359.74792 * 22 21 20 25 25 C 1.31377 * 109.07169 * 0.43098 * 24 22 21 26 26 C 1.48243 * 126.51050 * 179.84621 * 25 24 22 27 27 C 1.39373 * 119.73349 * 334.42126 * 26 25 24 28 28 C 1.38391 * 119.06362 * 179.70620 * 27 26 25 29 29 C 1.38787 * 118.51637 * 0.55497 * 28 27 26 30 30 C 1.38261 * 119.37425 * 359.72578 * 29 28 27 31 31 N 1.31758 * 120.89519 * 359.97438 * 30 29 28 32 32 H 1.08991 * 109.47234 * 296.86001 * 1 2 3 33 33 H 1.08998 * 109.46738 * 56.85824 * 1 2 3 34 34 H 1.09001 * 109.46825 * 176.85931 * 1 2 3 35 35 H 1.08999 * 109.88250 * 338.86510 * 4 2 1 36 36 H 1.09006 * 109.87936 * 100.02754 * 4 2 1 37 37 H 0.97006 * 120.00078 * 179.97438 * 9 8 6 38 38 H 1.08997 * 110.36591 * 265.28558 * 14 5 4 39 39 H 1.08997 * 110.36682 * 142.95975 * 14 5 4 40 40 H 0.97000 * 119.99739 * 87.20880 * 17 15 14 41 41 H 1.08004 * 126.05163 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.47172 * 359.97107 * 27 26 25 43 43 H 1.08005 * 120.74526 * 180.28099 * 28 27 26 44 44 H 1.08001 * 120.31761 * 179.70268 * 29 28 27 45 45 H 1.07995 * 119.55158 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2445 -1.5520 -0.7363 6 6 4.0037 -2.4004 -1.4973 7 1 3.6114 -2.7914 -2.4245 8 6 5.2775 -2.7578 -1.0772 9 7 5.8320 -3.8641 -1.5253 10 14 6.2047 -1.6685 0.1242 11 1 5.7967 -2.0033 1.5122 12 1 7.6646 -1.8919 -0.0303 13 1 5.8896 -0.2443 -0.1544 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7934 1.2151 16 1 1.4448 -1.6508 1.4407 17 7 2.2215 0.0736 2.3874 18 6 2.1872 -0.4566 3.6260 19 8 2.0384 -1.6550 3.7704 20 6 2.3300 0.4153 4.8048 21 6 2.5047 1.7833 4.8043 22 7 2.5910 2.1885 6.0807 23 1 2.7164 3.1063 6.3682 24 7 2.4676 1.0876 6.9330 25 6 2.3150 0.0007 6.2109 26 6 2.1522 -1.3816 6.7213 27 6 2.6637 -1.7212 7.9725 28 6 2.4985 -3.0140 8.4380 29 6 1.8368 -3.9292 7.6313 30 6 1.3600 -3.5257 6.3978 31 7 1.5253 -2.2868 5.9808 32 1 -0.3633 0.4643 0.9167 33 1 -0.3633 0.5618 -0.8605 34 1 -0.3633 -1.0261 -0.0563 35 1 1.3130 -1.4785 -1.5750 36 1 2.3741 -0.1058 -1.9976 37 1 6.7223 -4.1137 -1.2320 38 1 4.1932 -0.4466 0.7993 39 1 3.7960 -2.1406 1.2206 40 1 2.3403 1.0294 2.2721 41 1 2.5628 2.4164 3.9311 42 1 3.1779 -0.9848 8.5723 43 1 2.8800 -3.3054 9.4055 44 1 1.6960 -4.9471 7.9637 45 1 0.8443 -4.2353 5.7680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079824896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 88.426665 kcal Electronic energy + Delta-G solvation = -29547.160432 eV Core-core repulsion = 25566.375307 eV Total energy + Delta-G solvation = -3980.785125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24780 -40.74485 -40.59427 -38.96907 -35.60566 -34.35537 -33.93708 -33.32726 -32.81130 -31.57355 -31.06097 -29.35739 -27.74734 -25.49850 -25.12719 -24.50751 -23.81109 -22.56454 -21.55274 -21.51160 -20.67791 -19.38747 -18.93633 -17.74493 -17.48993 -17.47441 -16.95966 -16.84742 -16.52361 -16.16089 -15.88838 -15.25388 -15.21405 -15.13565 -14.95786 -14.67587 -14.54803 -14.25352 -14.16789 -13.90883 -13.64390 -13.52984 -13.20248 -13.08098 -12.79816 -12.70206 -12.27204 -12.20646 -12.08002 -11.81377 -11.56465 -11.45291 -11.30694 -10.87930 -10.86785 -10.67323 -10.14092 -10.02900 -9.85571 -9.54133 -9.07235 -8.22181 -5.47300 -0.23898 0.41403 0.55780 1.19615 1.27948 1.28338 1.39004 1.65434 2.21310 2.38060 2.52471 2.98456 3.00343 3.05679 3.38474 3.53238 3.59384 3.82041 3.89903 4.04043 4.05705 4.09139 4.17246 4.21231 4.29594 4.38004 4.44746 4.53637 4.61097 4.62413 4.80588 4.81264 4.89853 4.99444 5.05518 5.09250 5.14607 5.18933 5.26477 5.27621 5.46644 5.61172 5.69952 5.77530 6.07229 6.17115 6.36283 6.73037 6.79233 7.14611 7.50332 7.54701 8.07608 8.97746 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003633 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.358803 B = 7705.616101 C = 8516.356485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.110 0.890 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.233 4.233 7 H 0.066 0.934 8 C -0.035 4.035 9 N -0.954 5.954 10 Si 0.943 3.057 11 H -0.294 1.294 12 H -0.304 1.304 13 H -0.256 1.256 14 C 0.105 3.895 15 C 0.156 3.844 16 H 0.077 0.923 17 N -0.707 5.707 18 C 0.575 3.425 19 O -0.543 6.543 20 C -0.297 4.297 21 C 0.140 3.860 22 N -0.440 5.440 23 H 0.465 0.535 24 N -0.288 5.288 25 C 0.150 3.850 26 C 0.151 3.849 27 C -0.147 4.147 28 C -0.082 4.082 29 C -0.155 4.155 30 C 0.075 3.925 31 N -0.449 5.449 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.029 0.971 39 H 0.015 0.985 40 H 0.413 0.587 41 H 0.243 0.757 42 H 0.149 0.851 43 H 0.174 0.826 44 H 0.169 0.831 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 16.440 20.777 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 H 0.128 0.872 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.362 4.362 7 H 0.084 0.916 8 C -0.230 4.230 9 N -0.601 5.601 10 Si 0.772 3.228 11 H -0.221 1.221 12 H -0.233 1.233 13 H -0.181 1.181 14 C -0.021 4.021 15 C 0.049 3.951 16 H 0.095 0.905 17 N -0.360 5.360 18 C 0.362 3.638 19 O -0.419 6.419 20 C -0.313 4.313 21 C -0.012 4.012 22 N -0.148 5.148 23 H 0.315 0.685 24 N -0.111 5.111 25 C -0.018 4.018 26 C 0.013 3.987 27 C -0.168 4.168 28 C -0.107 4.107 29 C -0.176 4.176 30 C -0.083 4.083 31 N -0.159 5.159 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.167 0.833 43 H 0.191 0.809 44 H 0.187 0.813 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.243 16.202 21.163 28.927 hybrid contribution 1.455 -0.091 0.108 1.462 sum -9.788 16.111 21.271 28.422 Atomic orbital electron populations 1.21687 0.91851 1.02003 1.03187 1.22414 0.97649 0.99439 0.91457 0.87156 1.21693 0.88102 0.93312 0.96122 1.44765 1.33282 1.51644 1.05631 1.18647 0.95107 1.17970 1.04437 0.91637 1.25582 0.98048 0.98451 1.00884 1.69964 1.17072 1.23256 1.49821 0.85995 0.76885 0.81146 0.78734 1.22122 1.23269 1.18087 1.22254 0.97514 0.97069 0.85288 1.21797 0.94410 0.93860 0.84991 0.90460 1.45481 1.75401 1.11234 1.03919 1.17606 0.76163 0.87408 0.82578 1.90888 1.48840 1.16347 1.85825 1.21297 1.23513 0.93996 0.92474 1.23684 0.93103 0.93899 0.90503 1.45955 1.55407 1.10082 1.03385 0.68535 1.77188 1.24629 0.92844 1.16479 1.21505 0.97806 0.91712 0.90821 1.18739 0.98167 0.90188 0.91619 1.22295 1.00306 0.98866 0.95364 1.21941 0.95896 0.91797 1.01112 1.22645 0.97682 1.02452 0.94776 1.23126 0.97686 0.92314 0.95223 1.67807 1.12811 1.02882 1.32403 0.91031 0.90220 0.93768 0.94676 0.93801 0.92946 0.95319 0.96701 0.75000 0.74115 0.83298 0.80855 0.81318 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.16 71.98 0.66 -2.13 16 2 C -0.09 -2.48 3.20 -9.61 -0.03 -2.51 16 3 H 0.11 2.34 8.00 -2.39 -0.02 2.33 16 4 C 0.13 4.98 6.84 86.73 0.59 5.57 16 5 N -0.63 -31.32 3.21 -691.98 -2.22 -33.54 16 6 C -0.23 -14.02 10.57 84.03 0.89 -13.13 16 7 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 8 C -0.04 -2.18 5.43 84.86 0.46 -1.72 16 9 N -0.95 -63.11 13.97 21.65 0.30 -62.81 16 10 Si 0.94 50.23 24.27 68.60 1.66 51.89 16 11 H -0.29 -15.99 6.49 99.48 0.65 -15.34 16 12 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 13 H -0.26 -12.56 6.66 99.48 0.66 -11.90 16 14 C 0.11 4.85 4.39 86.86 0.38 5.23 16 15 C 0.16 5.46 2.87 46.38 0.13 5.59 16 16 H 0.08 3.14 7.44 -2.39 -0.02 3.13 16 17 N -0.71 -19.46 5.19 -439.32 -2.28 -21.74 16 18 C 0.57 19.16 7.81 86.63 0.68 19.84 16 19 O -0.54 -23.58 13.31 -4.08 -0.05 -23.63 16 20 C -0.30 -7.82 6.31 -18.78 -0.12 -7.94 16 21 C 0.14 1.88 11.50 84.26 0.97 2.85 16 22 N -0.44 -5.59 7.20 -56.43 -0.41 -6.00 16 23 H 0.47 1.66 8.96 -213.54 -1.91 -0.25 16 24 N -0.29 -6.46 12.54 -44.55 -0.56 -7.02 16 25 C 0.15 4.29 7.11 44.06 0.31 4.60 16 26 C 0.15 4.66 6.63 41.95 0.28 4.94 16 27 C -0.15 -3.47 9.75 22.58 0.22 -3.25 16 28 C -0.08 -1.51 10.16 22.44 0.23 -1.28 16 29 C -0.16 -3.09 10.11 22.41 0.23 -2.87 16 30 C 0.08 2.10 11.17 84.71 0.95 3.04 16 31 N -0.45 -15.55 7.06 -184.89 -1.31 -16.86 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.09 8.06 -2.39 -0.02 1.08 16 35 H 0.04 1.34 7.76 -2.39 -0.02 1.32 16 36 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 38 H 0.03 1.32 5.58 -2.39 -0.01 1.30 16 39 H 0.01 0.81 6.63 -2.39 -0.02 0.80 16 40 H 0.41 7.18 7.52 -92.71 -0.70 6.48 16 41 H 0.24 0.46 7.48 -2.91 -0.02 0.43 16 42 H 0.15 2.93 8.04 -2.91 -0.02 2.91 16 43 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -94.40 370.46 0.30 -94.10 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -1.67 Total: 8.79 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.82 Total: 16.82 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -6.47 Total: -147.97 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 1.66 Total: 51.89 kcal Total: -94.40 0.30 -94.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079824896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.524 kcal (2) G-P(sol) polarization free energy of solvation -94.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds