Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08001 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46952 * 89.99842 * 10 8 6 12 12 H 1.48491 * 109.46919 * 210.00491 * 10 8 6 13 13 H 1.48506 * 109.46733 * 330.00081 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 N 1.46502 * 110.72235 * 219.26811 * 15 14 5 18 18 C 1.34774 * 119.99871 * 271.16020 * 17 15 14 19 19 O 1.21604 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.47410 * 119.99945 * 179.97438 * 18 17 15 21 21 C 1.41334 * 126.40929 * 359.68394 * 20 18 17 22 22 N 1.30479 * 108.06553 * 179.81813 * 21 20 18 23 23 N 1.39938 * 108.91519 * 0.44421 * 22 21 20 24 24 C 1.40167 * 125.76996 * 179.68913 * 23 22 21 25 25 C 1.39267 * 120.48730 * 4.75453 * 24 23 22 26 26 C 1.38513 * 118.36226 * 179.75573 * 25 24 23 27 27 C 1.38275 * 119.23142 * 0.49518 * 26 25 24 28 28 N 1.31862 * 120.91045 * 359.76455 * 27 26 25 29 29 C 1.31819 * 121.79771 * 359.97438 * 28 27 26 30 30 C 1.34535 * 108.45770 * 359.71407 * 23 22 21 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 36 36 H 0.96994 * 120.00360 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 0.96999 * 120.00288 * 91.15371 * 17 15 14 40 40 H 1.08003 * 125.96774 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.81647 * 359.97152 * 25 24 23 42 42 H 1.07995 * 120.38193 * 180.24082 * 26 25 24 43 43 H 1.07998 * 119.54468 * 179.75028 * 27 26 25 44 44 H 1.07996 * 119.66974 * 179.97438 * 29 28 27 45 45 H 1.08003 * 126.30932 * 179.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6780 8 6 5.6837 -1.9634 -1.0765 9 7 5.8428 -2.0313 0.2282 10 14 7.0989 -2.4025 -2.2140 11 1 7.9014 -1.1857 -2.4982 12 1 7.9595 -3.4222 -1.5625 13 1 6.5606 -2.9485 -3.4858 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2285 0.0461 2.3839 18 6 2.2520 -0.5041 3.6140 19 8 2.1546 -1.7094 3.7430 20 6 2.3957 0.3552 4.8031 21 6 2.5249 1.7626 4.8104 22 7 2.6246 2.1533 6.0513 23 7 2.5753 1.0310 6.8857 24 6 2.6581 1.0459 8.2848 25 6 2.7039 2.2535 8.9771 26 6 2.7804 2.2169 10.3596 27 6 2.8190 0.9929 11.0016 28 7 2.7793 -0.1330 10.3163 29 6 2.7013 -0.1428 9.0005 30 6 2.4354 -0.0648 6.1178 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.6949 -2.3090 0.5992 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.3059 1.0075 2.2811 40 1 2.5362 2.4031 3.9409 41 1 2.6769 3.1953 8.4491 42 1 2.8137 3.1338 10.9293 43 1 2.8827 0.9585 12.0792 44 1 2.6713 -1.0851 8.4737 45 1 2.3671 -1.0850 6.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079843590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 114.491871 kcal Electronic energy + Delta-G solvation = -28467.683015 eV Core-core repulsion = 24488.028162 eV Total energy + Delta-G solvation = -3979.654853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.03245 -40.37127 -39.17861 -37.36214 -34.52909 -33.83298 -32.80302 -32.55781 -30.64798 -30.34872 -29.90127 -27.71090 -25.63725 -24.81607 -24.39646 -23.60591 -22.32169 -21.36080 -20.41129 -19.93178 -19.57743 -18.66609 -17.41582 -16.90334 -16.72532 -16.12667 -15.89644 -15.81391 -15.21813 -14.92203 -14.45315 -14.38195 -14.08048 -13.88619 -13.67394 -13.62289 -13.12419 -13.10296 -12.75529 -12.69049 -12.57805 -11.95021 -11.67460 -11.45431 -11.31603 -11.14137 -10.99619 -10.76214 -10.58069 -10.37305 -10.23809 -10.12155 -9.95213 -9.91003 -9.69153 -9.55309 -9.48428 -8.67710 -8.58109 -8.37815 -6.80371 -5.66191 -3.01426 0.15835 0.64988 1.60552 1.81662 2.00487 3.27736 3.42237 3.46814 3.49710 3.50443 3.66416 3.88747 4.00753 4.15003 4.40256 4.46472 4.52878 4.58132 4.86157 4.90999 5.02748 5.11582 5.14090 5.33650 5.45233 5.50828 5.53205 5.55487 5.58091 5.78882 5.90215 6.00340 6.01721 6.11421 6.17755 6.23997 6.38030 6.51894 6.57837 6.65051 6.80859 6.96480 7.14679 7.36670 7.60339 7.62473 7.88552 7.95611 8.29008 8.62206 9.24782 9.85504 10.50408 11.44285 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002342 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.581998 B =11953.617473 C =13051.436578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.706 5.706 18 C 0.591 3.409 19 O -0.542 6.542 20 C -0.264 4.264 21 C 0.096 3.904 22 N -0.294 5.294 23 N -0.315 5.315 24 C 0.109 3.891 25 C -0.073 4.073 26 C -0.148 4.148 27 C 0.087 3.913 28 N -0.456 5.456 29 C 0.089 3.911 30 C 0.123 3.877 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.394 0.606 40 H 0.199 0.801 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 11.390 18.008 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.047 3.953 15 C 0.018 3.982 16 H 0.107 0.893 17 N -0.355 5.355 18 C 0.377 3.623 19 O -0.420 6.420 20 C -0.278 4.278 21 C -0.093 4.093 22 N -0.111 5.111 23 N -0.089 5.089 24 C 0.015 3.985 25 C -0.101 4.101 26 C -0.168 4.168 27 C -0.071 4.071 28 N -0.164 5.164 29 C -0.072 4.072 30 C -0.023 4.023 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.228 0.772 40 H 0.215 0.785 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.085 10.626 19.395 24.306 hybrid contribution 0.876 0.432 -1.656 1.923 sum -9.208 11.058 17.739 22.841 Atomic orbital electron populations 1.21701 0.95052 1.01806 1.00957 1.22611 0.94801 0.99519 0.96408 0.90441 1.21588 0.87656 0.95024 0.94308 1.44409 1.07821 1.79226 1.01829 1.19039 0.89283 1.38580 0.88913 0.90357 1.24828 0.97881 1.01755 0.95994 1.69970 1.24104 1.53276 1.09167 0.86131 0.82376 0.77772 0.79544 1.21678 1.21705 1.20694 1.21477 0.90074 1.00462 0.83265 1.22495 1.00329 0.92763 0.82655 0.89324 1.45660 1.74058 1.10320 1.05454 1.17047 0.76362 0.86807 0.82046 1.90796 1.50575 1.14292 1.86348 1.20500 1.19673 0.93833 0.93799 1.24293 0.95506 0.94139 0.95326 1.77216 1.25291 1.07311 1.01289 1.45485 1.54100 1.05393 1.03886 1.18710 1.03659 0.96662 0.79513 1.21421 0.96756 0.97640 0.94266 1.22148 1.00356 1.00284 0.93992 1.22920 0.95723 0.87491 1.00935 1.67793 1.10933 1.30845 1.06821 1.22680 0.97929 0.96365 0.90189 1.23054 0.95704 0.93383 0.90159 0.93080 0.92826 0.92584 0.94031 0.96035 0.93758 0.93143 0.93404 0.77226 0.78480 0.83132 0.83610 0.81861 0.81760 0.78887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.31 37.16 0.35 -1.43 16 2 C -0.11 -1.84 3.26 -88.47 -0.29 -2.13 16 3 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 4 C 0.14 2.83 6.70 -2.53 -0.02 2.81 16 5 N -0.61 -15.46 3.39 -170.07 -0.58 -16.04 16 6 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.57 10.31 55.49 0.57 -27.00 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.17 4.27 5.12 -3.07 -0.02 4.25 16 15 C 0.12 2.29 2.74 -66.10 -0.18 2.11 16 16 H 0.09 1.77 7.52 -51.93 -0.39 1.38 16 17 N -0.71 -11.05 5.11 -53.11 -0.27 -11.32 16 18 C 0.59 9.89 7.81 -12.53 -0.10 9.79 16 19 O -0.54 -11.18 16.58 5.27 0.09 -11.09 16 20 C -0.26 -3.54 6.13 -105.05 -0.64 -4.19 16 21 C 0.10 1.08 11.50 -16.95 -0.19 0.89 16 22 N -0.29 -3.52 11.86 30.88 0.37 -3.15 16 23 N -0.32 -3.62 3.77 -10.11 -0.04 -3.66 16 24 C 0.11 1.09 6.70 -83.45 -0.56 0.53 16 25 C -0.07 -0.60 9.78 -39.10 -0.38 -0.98 16 26 C -0.15 -0.89 10.11 -39.47 -0.40 -1.29 16 27 C 0.09 0.59 11.18 -17.52 -0.20 0.39 16 28 N -0.46 -4.27 10.35 -13.09 -0.14 -4.40 16 29 C 0.09 0.82 10.62 -17.34 -0.18 0.64 16 30 C 0.12 1.47 10.61 -16.43 -0.17 1.30 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.44 7.99 -51.92 -0.41 0.02 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 38 H 0.05 1.38 7.51 -51.93 -0.39 0.99 16 39 H 0.39 4.89 7.50 -40.82 -0.31 4.58 16 40 H 0.20 1.54 7.50 -52.48 -0.39 1.15 16 41 H 0.15 1.17 7.78 -52.49 -0.41 0.76 16 42 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 43 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.17 1.26 6.76 -52.49 -0.35 0.90 16 45 H 0.19 1.90 7.06 -52.48 -0.37 1.53 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -36.06 379.24 -8.44 -44.50 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.90 Total: 3.32 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -3.24 Total: 5.77 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -0.08 Total: -65.57 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.06 -8.44 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079843590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.992 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds