Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08001 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46952 * 89.99842 * 10 8 6 12 12 H 1.48491 * 109.46919 * 210.00491 * 10 8 6 13 13 H 1.48506 * 109.46733 * 330.00081 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 N 1.46502 * 110.72235 * 219.26811 * 15 14 5 18 18 C 1.34774 * 119.99871 * 271.16020 * 17 15 14 19 19 O 1.21604 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.47410 * 119.99945 * 179.97438 * 18 17 15 21 21 C 1.41334 * 126.40929 * 359.68394 * 20 18 17 22 22 N 1.30479 * 108.06553 * 179.81813 * 21 20 18 23 23 N 1.39938 * 108.91519 * 0.44421 * 22 21 20 24 24 C 1.40167 * 125.76996 * 179.68913 * 23 22 21 25 25 C 1.39267 * 120.48730 * 4.75453 * 24 23 22 26 26 C 1.38513 * 118.36226 * 179.75573 * 25 24 23 27 27 C 1.38275 * 119.23142 * 0.49518 * 26 25 24 28 28 N 1.31862 * 120.91045 * 359.76455 * 27 26 25 29 29 C 1.31819 * 121.79771 * 359.97438 * 28 27 26 30 30 C 1.34535 * 108.45770 * 359.71407 * 23 22 21 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 36 36 H 0.96994 * 120.00360 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 0.96999 * 120.00288 * 91.15371 * 17 15 14 40 40 H 1.08003 * 125.96774 * 359.97438 * 21 20 18 41 41 H 1.07998 * 120.81647 * 359.97152 * 25 24 23 42 42 H 1.07995 * 120.38193 * 180.24082 * 26 25 24 43 43 H 1.07998 * 119.54468 * 179.75028 * 27 26 25 44 44 H 1.07996 * 119.66974 * 179.97438 * 29 28 27 45 45 H 1.08003 * 126.30932 * 179.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6780 8 6 5.6837 -1.9634 -1.0765 9 7 5.8428 -2.0313 0.2282 10 14 7.0989 -2.4025 -2.2140 11 1 7.9014 -1.1857 -2.4982 12 1 7.9595 -3.4222 -1.5625 13 1 6.5606 -2.9485 -3.4858 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2285 0.0461 2.3839 18 6 2.2520 -0.5041 3.6140 19 8 2.1546 -1.7094 3.7430 20 6 2.3957 0.3552 4.8031 21 6 2.5249 1.7626 4.8104 22 7 2.6246 2.1533 6.0513 23 7 2.5753 1.0310 6.8857 24 6 2.6581 1.0459 8.2848 25 6 2.7039 2.2535 8.9771 26 6 2.7804 2.2169 10.3596 27 6 2.8190 0.9929 11.0016 28 7 2.7793 -0.1330 10.3163 29 6 2.7013 -0.1428 9.0005 30 6 2.4354 -0.0648 6.1178 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.6949 -2.3090 0.5992 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.3059 1.0075 2.2811 40 1 2.5362 2.4031 3.9409 41 1 2.6769 3.1953 8.4491 42 1 2.8137 3.1338 10.9293 43 1 2.8827 0.9585 12.0792 44 1 2.6713 -1.0851 8.4737 45 1 2.3671 -1.0850 6.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079843590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 89.356958 kcal Electronic energy + Delta-G solvation = -28468.772947 eV Core-core repulsion = 24488.028162 eV Total energy + Delta-G solvation = -3980.744785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.90777 -41.11932 -40.53755 -38.94806 -35.64024 -35.25438 -34.19552 -33.39408 -32.14690 -31.60747 -30.73783 -29.33541 -27.35832 -25.92581 -25.07273 -24.95893 -23.48865 -22.22009 -21.93438 -21.45194 -20.80210 -19.63471 -18.86322 -18.11507 -17.59223 -17.33560 -17.01479 -16.83624 -16.71672 -16.05673 -15.75250 -15.48228 -15.42438 -15.03363 -14.73359 -14.68041 -14.37877 -14.25714 -14.09223 -13.88257 -13.67829 -13.30112 -13.20688 -13.00555 -12.86425 -12.55835 -12.44301 -12.18971 -11.99567 -11.92704 -11.83289 -11.61940 -11.41466 -10.99066 -10.84458 -10.73022 -10.70492 -10.39600 -9.96713 -9.40849 -8.90096 -7.82830 -5.20475 -0.55770 0.05566 0.68413 0.98208 1.09144 1.44818 1.47542 1.56205 2.21603 2.42396 2.50885 2.67499 3.16602 3.30155 3.35246 3.53144 3.62029 3.67753 3.78332 3.83564 3.91869 3.98233 4.10386 4.15937 4.21347 4.29386 4.49060 4.55909 4.61946 4.67917 4.77189 4.87642 4.92306 4.99293 5.10817 5.12230 5.22901 5.27338 5.33771 5.37520 5.47401 5.54347 5.66886 5.77971 5.83386 6.18946 6.25938 6.66296 6.76693 7.08579 7.33291 7.78137 8.41787 9.26045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002342 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.581998 B =11953.617473 C =13051.436578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.266 1.266 14 C 0.188 3.812 15 C 0.139 3.861 16 H 0.074 0.926 17 N -0.694 5.694 18 C 0.591 3.409 19 O -0.591 6.591 20 C -0.288 4.288 21 C 0.105 3.895 22 N -0.305 5.305 23 N -0.311 5.311 24 C 0.081 3.919 25 C -0.078 4.078 26 C -0.135 4.135 27 C 0.088 3.912 28 N -0.482 5.482 29 C 0.080 3.920 30 C 0.126 3.874 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.243 0.757 37 H 0.018 0.982 38 H -0.011 1.011 39 H 0.413 0.587 40 H 0.230 0.770 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.196 0.804 44 H 0.169 0.831 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 14.016 18.591 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.113 0.887 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.106 0.894 8 C -0.264 4.264 9 N -0.601 5.601 10 Si 0.808 3.192 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.191 1.191 14 C 0.061 3.939 15 C 0.032 3.968 16 H 0.093 0.907 17 N -0.344 5.344 18 C 0.380 3.620 19 O -0.472 6.472 20 C -0.302 4.302 21 C -0.083 4.083 22 N -0.123 5.123 23 N -0.083 5.083 24 C -0.013 4.013 25 C -0.106 4.106 26 C -0.154 4.154 27 C -0.069 4.069 28 N -0.190 5.190 29 C -0.079 4.079 30 C -0.022 4.022 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.007 0.993 39 H 0.250 0.750 40 H 0.246 0.754 41 H 0.172 0.828 42 H 0.200 0.800 43 H 0.213 0.787 44 H 0.186 0.814 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.334 13.320 19.969 26.545 hybrid contribution 1.240 -0.380 -1.694 2.133 sum -10.094 12.939 18.275 24.562 Atomic orbital electron populations 1.21655 0.91721 1.02232 1.03057 1.22536 0.97251 0.99018 0.92417 0.88670 1.21873 0.85183 0.95805 0.96494 1.44733 1.09478 1.79216 1.02031 1.19506 0.90063 1.37412 0.89831 0.89380 1.25725 1.00725 1.02549 0.97414 1.70240 1.24031 1.54770 1.11079 0.85059 0.78940 0.77255 0.77979 1.20979 1.22652 1.19083 1.21114 0.92802 0.96537 0.83408 1.22046 0.96391 0.93653 0.84678 0.90739 1.45440 1.73638 1.10962 1.04368 1.17498 0.75037 0.86520 0.82982 1.90768 1.52831 1.16540 1.87058 1.20217 1.22559 0.94597 0.92858 1.24738 0.94199 0.93306 0.96096 1.77187 1.25878 1.07730 1.01478 1.45592 1.53220 1.04975 1.04550 1.18958 1.05827 0.97731 0.78791 1.21653 0.96464 0.97102 0.95354 1.22530 0.98274 1.01519 0.93111 1.23557 0.93800 0.87091 1.02414 1.67836 1.11998 1.32375 1.06791 1.22790 0.98032 0.96560 0.90505 1.23299 0.94529 0.94228 0.90111 0.91254 0.90359 0.93136 0.92617 0.95745 0.94769 0.96392 0.99311 0.74998 0.75373 0.82805 0.79955 0.78714 0.81367 0.77746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.31 71.98 0.67 -2.24 16 2 C -0.09 -2.83 3.26 -9.40 -0.03 -2.86 16 3 H 0.10 2.62 8.01 -2.39 -0.02 2.60 16 4 C 0.13 5.15 6.70 86.85 0.58 5.74 16 5 N -0.63 -32.75 3.39 -691.98 -2.35 -35.10 16 6 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 8 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 9 N -0.95 -60.11 10.31 21.65 0.22 -59.89 16 10 Si 0.98 47.00 29.55 68.60 2.03 49.02 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 14 C 0.19 9.76 5.12 86.73 0.44 10.21 16 15 C 0.14 5.27 2.74 46.18 0.13 5.40 16 16 H 0.07 3.08 7.52 -2.39 -0.02 3.06 16 17 N -0.69 -21.75 5.11 -440.19 -2.25 -24.00 16 18 C 0.59 20.36 7.81 86.66 0.68 21.04 16 19 O -0.59 -25.74 16.58 -4.04 -0.07 -25.81 16 20 C -0.29 -7.78 6.13 -20.14 -0.12 -7.90 16 21 C 0.11 2.24 11.50 85.66 0.99 3.23 16 22 N -0.31 -7.01 11.86 -56.23 -0.67 -7.67 16 23 N -0.31 -7.05 3.77 -185.89 -0.70 -7.75 16 24 C 0.08 1.56 6.70 38.19 0.26 1.82 16 25 C -0.08 -1.16 9.78 22.58 0.22 -0.94 16 26 C -0.13 -1.24 10.11 22.34 0.23 -1.01 16 27 C 0.09 0.99 11.18 84.70 0.95 1.93 16 28 N -0.48 -8.51 10.35 -195.34 -2.02 -10.53 16 29 C 0.08 1.48 10.62 84.83 0.90 2.38 16 30 C 0.13 3.08 10.61 84.24 0.89 3.98 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.21 8.08 -2.38 -0.02 1.20 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.02 0.96 7.99 -2.38 -0.02 0.94 16 36 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.02 1.03 7.27 -2.39 -0.02 1.01 16 38 H -0.01 -0.71 7.51 -2.38 -0.02 -0.73 16 39 H 0.41 9.65 7.50 -92.71 -0.70 8.96 16 40 H 0.23 3.03 7.50 -2.91 -0.02 3.01 16 41 H 0.15 2.14 7.78 -2.91 -0.02 2.12 16 42 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 43 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 44 H 0.17 2.70 6.76 -2.91 -0.02 2.68 16 45 H 0.21 4.27 7.06 -2.91 -0.02 4.25 16 Total: -1.00 -83.88 379.24 2.63 -81.25 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.33 Total: 16.19 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 8.10 Total: 24.29 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -7.77 Total: -144.95 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -83.88 2.63 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079843590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.611 kcal (2) G-P(sol) polarization free energy of solvation -83.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds