Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.91421 * 2 1 4 4 C 1.54907 * 111.00693 * 236.10066 * 2 1 3 5 5 N 1.47426 * 104.83082 * 204.91802 * 4 2 1 6 6 C 1.36943 * 125.64572 * 204.09381 * 5 4 2 7 7 H 1.07997 * 120.00177 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99712 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00337 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99656 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47543 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.46949 * 209.99817 * 10 8 6 13 13 H 1.48504 * 109.47201 * 329.99698 * 10 8 6 14 14 C 1.47016 * 108.70530 * 24.12052 * 5 4 2 15 15 C 1.54330 * 107.27408 * 358.94534 * 14 5 4 16 16 H 1.08992 * 110.71769 * 96.34149 * 15 14 5 17 17 N 1.46489 * 110.72155 * 219.44379 * 15 14 5 18 18 C 1.34778 * 120.00110 * 273.54513 * 17 15 14 19 19 O 1.21576 * 119.99786 * 359.97438 * 18 17 15 20 20 C 1.47669 * 120.00299 * 180.02562 * 18 17 15 21 21 C 1.39706 * 120.07959 * 179.97438 * 20 18 17 22 22 C 1.37734 * 119.92056 * 179.97438 * 21 20 18 23 23 C 1.39044 * 120.07678 * 0.28179 * 22 21 20 24 24 N 1.39867 * 119.91865 * 179.69752 * 23 22 21 25 25 C 1.34799 * 126.84673 * 179.70723 * 24 23 22 26 26 N 1.30822 * 108.02128 * 179.87439 * 25 24 23 27 27 C 1.33285 * 109.84483 * 0.40047 * 26 25 24 28 28 N 1.30722 * 109.01608 * 359.75361 * 27 26 25 29 29 C 1.39047 * 120.15926 * 359.44066 * 23 22 21 30 30 C 1.37733 * 120.07696 * 0.55800 * 29 23 22 31 31 H 1.09002 * 109.47169 * 296.09846 * 1 2 3 32 32 H 1.09001 * 109.47228 * 56.09998 * 1 2 3 33 33 H 1.09000 * 109.46828 * 176.09678 * 1 2 3 34 34 H 1.08994 * 110.37427 * 86.07333 * 4 2 1 35 35 H 1.09007 * 110.36483 * 323.74712 * 4 2 1 36 36 H 0.96996 * 120.00010 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.88467 * 239.52950 * 14 5 4 38 38 H 1.09003 * 110.00747 * 118.43559 * 14 5 4 39 39 H 0.96998 * 120.00526 * 93.54459 * 17 15 14 40 40 H 1.08000 * 120.03873 * 359.95415 * 21 20 18 41 41 H 1.08002 * 119.95682 * 179.97438 * 22 21 20 42 42 H 1.08005 * 125.99268 * 359.97438 * 25 24 23 43 43 H 1.08001 * 125.48903 * 179.76763 * 27 26 25 44 44 H 1.08001 * 119.95946 * 180.25879 * 29 23 22 45 45 H 1.07998 * 120.03885 * 179.70617 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7732 6 6 4.4641 -1.5665 -1.6071 7 1 4.3335 -1.5115 -2.6777 8 6 5.6832 -1.9653 -1.0762 9 7 5.8426 -2.0319 0.2285 10 14 7.0974 -2.4073 -2.2137 11 1 7.9013 -1.1919 -2.4996 12 1 7.9572 -3.4273 -1.5612 13 1 6.5581 -2.9543 -3.4846 14 6 3.4675 -1.2740 0.6960 15 6 2.0861 -0.8078 1.2023 16 1 1.4479 -1.6631 1.4239 17 7 2.2286 0.0497 2.3814 18 6 2.3022 -0.5002 3.6097 19 8 2.2499 -1.7080 3.7391 20 6 2.4452 0.3641 4.7984 21 6 2.5211 -0.2042 6.0724 22 6 2.6550 0.6051 7.1788 23 6 2.7088 1.9864 7.0294 24 7 2.8385 2.8054 8.1558 25 6 2.9095 4.1515 8.1727 26 7 3.0231 4.5351 9.4182 27 6 3.0371 3.4706 10.2201 28 7 2.9268 2.3890 9.4942 29 6 2.6394 2.5553 5.7625 30 6 2.5054 1.7521 4.6517 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1720 -2.0837 35 1 1.4520 -1.6704 -1.4024 36 1 6.6945 -2.3102 0.5995 37 1 4.2426 -0.5995 1.0600 38 1 3.6663 -2.2882 1.0424 39 1 2.2700 1.0133 2.2783 40 1 2.4745 -1.2768 6.1896 41 1 2.7133 0.1664 8.1640 42 1 2.8766 4.7997 7.3094 43 1 3.1251 3.4973 11.2962 44 1 2.6857 3.6284 5.6499 45 1 2.4468 2.1949 3.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079896074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 120.020374 kcal Electronic energy + Delta-G solvation = -28509.826658 eV Core-core repulsion = 24530.411539 eV Total energy + Delta-G solvation = -3979.415119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.73663 -40.28902 -38.84640 -37.44053 -34.53135 -34.02222 -32.73954 -32.05697 -31.20267 -30.40597 -30.09120 -27.74420 -25.69724 -25.02478 -23.81588 -23.58194 -22.27236 -21.53119 -20.76346 -20.10991 -19.69066 -18.89113 -17.58805 -16.90791 -16.31549 -16.26314 -15.94320 -15.37023 -15.02476 -14.70251 -14.60311 -14.51055 -14.23431 -13.89590 -13.76801 -13.29222 -13.17273 -12.95441 -12.85159 -12.65069 -12.62025 -12.02999 -11.73576 -11.44042 -11.37720 -11.17548 -11.04561 -10.80053 -10.65909 -10.56548 -10.42686 -10.32979 -10.01611 -9.95958 -9.77977 -9.66210 -9.48413 -8.81504 -8.63454 -8.51407 -6.85476 -5.70641 -3.06079 0.08687 0.91925 1.42851 1.73710 2.46118 2.85674 3.32277 3.39683 3.44633 3.47119 3.69220 3.79552 3.95374 4.29658 4.43740 4.48527 4.54212 4.68532 4.89022 5.00856 5.08207 5.12491 5.26557 5.39196 5.52876 5.53435 5.61080 5.69059 5.71624 5.89098 5.92553 5.93418 5.94201 6.05281 6.10090 6.16047 6.22703 6.30720 6.44513 6.55783 6.59001 6.69254 6.88339 7.51964 7.53859 7.56051 7.79254 7.84557 8.23910 8.44518 9.20148 9.80865 10.45324 11.39948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002334 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.370355 B =11995.883339 C =12885.604030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.089 0.911 17 N -0.705 5.705 18 C 0.554 3.446 19 O -0.529 6.529 20 C -0.123 4.123 21 C -0.038 4.038 22 C -0.118 4.118 23 C 0.162 3.838 24 N -0.329 5.329 25 C 0.263 3.737 26 N -0.538 5.538 27 C 0.206 3.794 28 N -0.312 5.312 29 C -0.139 4.139 30 C -0.060 4.060 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.394 0.606 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.225 0.775 43 H 0.224 0.776 44 H 0.138 0.862 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.370 13.326 13.883 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.356 5.356 18 C 0.340 3.660 19 O -0.406 6.406 20 C -0.127 4.127 21 C -0.057 4.057 22 C -0.138 4.138 23 C 0.069 3.931 24 N -0.113 5.113 25 C -0.032 4.032 26 N -0.264 5.264 27 C -0.096 4.096 28 N -0.137 5.137 29 C -0.160 4.160 30 C -0.080 4.080 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.229 0.771 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.241 0.759 43 H 0.240 0.760 44 H 0.155 0.845 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.169 11.971 14.404 21.312 hybrid contribution 0.963 0.390 -0.744 1.278 sum -9.206 12.361 13.660 20.594 Atomic orbital electron populations 1.21709 0.94978 1.01892 1.00992 1.22618 0.94849 0.99488 0.96384 0.90440 1.21591 0.87661 0.95043 0.94283 1.44409 1.07854 1.79243 1.01768 1.19041 0.89290 1.38669 0.88919 0.90313 1.24832 0.97908 1.01671 0.96014 1.69964 1.24177 1.53206 1.09192 0.86124 0.82312 0.77801 0.79533 1.21645 1.21672 1.20670 1.21474 0.89887 1.00522 0.83355 1.22546 1.00505 0.92704 0.82686 0.89330 1.45845 1.73633 1.10153 1.05934 1.18031 0.77210 0.87749 0.82983 1.90810 1.49448 1.14196 1.86126 1.20252 1.04251 0.93600 0.94570 1.21258 0.93176 1.01316 0.89954 1.20905 1.01773 0.90608 1.00509 1.17729 1.01664 0.90327 0.83366 1.47723 1.52391 1.05948 1.05243 1.26274 0.95682 0.83337 0.97916 1.70646 1.24086 1.31617 1.00031 1.26214 0.97172 0.84711 1.01544 1.78164 1.25725 1.23670 0.86151 1.20683 1.04864 1.00707 0.89757 1.21161 0.95915 0.92268 0.98631 0.93102 0.92725 0.92522 0.93933 0.95988 0.93709 0.93157 0.93314 0.77099 0.83310 0.83824 0.75932 0.76011 0.84450 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.16 0.35 -1.36 16 2 C -0.11 -1.78 3.25 -88.47 -0.29 -2.06 16 3 H 0.08 1.14 8.00 -51.92 -0.42 0.73 16 4 C 0.14 2.76 6.70 -2.53 -0.02 2.75 16 5 N -0.61 -15.22 3.39 -170.07 -0.58 -15.79 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 10 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.17 4.20 5.12 -3.06 -0.02 4.19 16 15 C 0.12 2.19 2.70 -66.10 -0.18 2.01 16 16 H 0.09 1.72 7.59 -51.93 -0.39 1.33 16 17 N -0.71 -10.55 5.08 -53.03 -0.27 -10.82 16 18 C 0.55 8.89 7.76 -12.41 -0.10 8.79 16 19 O -0.53 -10.69 16.06 5.30 0.09 -10.61 16 20 C -0.12 -1.51 5.88 -104.95 -0.62 -2.13 16 21 C -0.04 -0.44 9.58 -39.22 -0.38 -0.82 16 22 C -0.12 -1.24 9.66 -39.47 -0.38 -1.63 16 23 C 0.16 1.57 6.70 -83.59 -0.56 1.01 16 24 N -0.33 -3.22 3.81 -11.77 -0.04 -3.27 16 25 C 0.26 2.08 11.97 -90.33 -1.08 1.00 16 26 N -0.54 -5.11 11.19 -15.73 -0.18 -5.29 16 27 C 0.21 1.82 13.03 -91.77 -1.20 0.62 16 28 N -0.31 -3.34 12.03 29.30 0.35 -2.99 16 29 C -0.14 -1.08 9.45 -39.47 -0.37 -1.45 16 30 C -0.06 -0.54 9.53 -39.22 -0.37 -0.92 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.05 1.34 7.27 -51.93 -0.38 0.97 16 38 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16 39 H 0.39 4.55 6.54 -40.82 -0.27 4.28 16 40 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 41 H 0.14 1.46 7.72 -52.49 -0.41 1.05 16 42 H 0.22 0.75 7.08 -52.48 -0.37 0.38 16 43 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.14 0.58 6.79 -52.49 -0.36 0.22 16 45 H 0.14 0.93 6.39 -52.49 -0.34 0.60 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -36.16 376.38 -10.65 -46.81 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.78 Total: 2.72 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -5.46 Total: 3.17 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.14 Total: -64.88 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.16 -10.65 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079896074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.828 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds