Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.91421 * 2 1 4 4 C 1.54907 * 111.00693 * 236.10066 * 2 1 3 5 5 N 1.47426 * 104.83082 * 204.91802 * 4 2 1 6 6 C 1.36943 * 125.64572 * 204.09381 * 5 4 2 7 7 H 1.07997 * 120.00177 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99712 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00337 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99656 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47543 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.46949 * 209.99817 * 10 8 6 13 13 H 1.48504 * 109.47201 * 329.99698 * 10 8 6 14 14 C 1.47016 * 108.70530 * 24.12052 * 5 4 2 15 15 C 1.54330 * 107.27408 * 358.94534 * 14 5 4 16 16 H 1.08992 * 110.71769 * 96.34149 * 15 14 5 17 17 N 1.46489 * 110.72155 * 219.44379 * 15 14 5 18 18 C 1.34778 * 120.00110 * 273.54513 * 17 15 14 19 19 O 1.21576 * 119.99786 * 359.97438 * 18 17 15 20 20 C 1.47669 * 120.00299 * 180.02562 * 18 17 15 21 21 C 1.39706 * 120.07959 * 179.97438 * 20 18 17 22 22 C 1.37734 * 119.92056 * 179.97438 * 21 20 18 23 23 C 1.39044 * 120.07678 * 0.28179 * 22 21 20 24 24 N 1.39867 * 119.91865 * 179.69752 * 23 22 21 25 25 C 1.34799 * 126.84673 * 179.70723 * 24 23 22 26 26 N 1.30822 * 108.02128 * 179.87439 * 25 24 23 27 27 C 1.33285 * 109.84483 * 0.40047 * 26 25 24 28 28 N 1.30722 * 109.01608 * 359.75361 * 27 26 25 29 29 C 1.39047 * 120.15926 * 359.44066 * 23 22 21 30 30 C 1.37733 * 120.07696 * 0.55800 * 29 23 22 31 31 H 1.09002 * 109.47169 * 296.09846 * 1 2 3 32 32 H 1.09001 * 109.47228 * 56.09998 * 1 2 3 33 33 H 1.09000 * 109.46828 * 176.09678 * 1 2 3 34 34 H 1.08994 * 110.37427 * 86.07333 * 4 2 1 35 35 H 1.09007 * 110.36483 * 323.74712 * 4 2 1 36 36 H 0.96996 * 120.00010 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.88467 * 239.52950 * 14 5 4 38 38 H 1.09003 * 110.00747 * 118.43559 * 14 5 4 39 39 H 0.96998 * 120.00526 * 93.54459 * 17 15 14 40 40 H 1.08000 * 120.03873 * 359.95415 * 21 20 18 41 41 H 1.08002 * 119.95682 * 179.97438 * 22 21 20 42 42 H 1.08005 * 125.99268 * 359.97438 * 25 24 23 43 43 H 1.08001 * 125.48903 * 179.76763 * 27 26 25 44 44 H 1.08001 * 119.95946 * 180.25879 * 29 23 22 45 45 H 1.07998 * 120.03885 * 179.70617 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7732 6 6 4.4641 -1.5665 -1.6071 7 1 4.3335 -1.5115 -2.6777 8 6 5.6832 -1.9653 -1.0762 9 7 5.8426 -2.0319 0.2285 10 14 7.0974 -2.4073 -2.2137 11 1 7.9013 -1.1919 -2.4996 12 1 7.9572 -3.4273 -1.5612 13 1 6.5581 -2.9543 -3.4846 14 6 3.4675 -1.2740 0.6960 15 6 2.0861 -0.8078 1.2023 16 1 1.4479 -1.6631 1.4239 17 7 2.2286 0.0497 2.3814 18 6 2.3022 -0.5002 3.6097 19 8 2.2499 -1.7080 3.7391 20 6 2.4452 0.3641 4.7984 21 6 2.5211 -0.2042 6.0724 22 6 2.6550 0.6051 7.1788 23 6 2.7088 1.9864 7.0294 24 7 2.8385 2.8054 8.1558 25 6 2.9095 4.1515 8.1727 26 7 3.0231 4.5351 9.4182 27 6 3.0371 3.4706 10.2201 28 7 2.9268 2.3890 9.4942 29 6 2.6394 2.5553 5.7625 30 6 2.5054 1.7521 4.6517 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1720 -2.0837 35 1 1.4520 -1.6704 -1.4024 36 1 6.6945 -2.3102 0.5995 37 1 4.2426 -0.5995 1.0600 38 1 3.6663 -2.2882 1.0424 39 1 2.2700 1.0133 2.2783 40 1 2.4745 -1.2768 6.1896 41 1 2.7133 0.1664 8.1640 42 1 2.8766 4.7997 7.3094 43 1 3.1251 3.4973 11.2962 44 1 2.6857 3.6284 5.6499 45 1 2.4468 2.1949 3.6683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079896074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 97.459445 kcal Electronic energy + Delta-G solvation = -28510.804973 eV Core-core repulsion = 24530.411539 eV Total energy + Delta-G solvation = -3980.393435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38681 -41.40977 -39.97415 -38.90182 -35.72206 -35.28433 -34.30701 -32.76432 -32.19142 -31.95667 -30.98214 -29.32527 -27.37305 -26.05341 -25.07652 -24.47723 -23.26221 -22.29789 -22.08863 -21.53861 -21.05616 -19.61524 -18.90145 -18.65644 -17.55313 -16.95098 -16.92034 -16.69333 -16.38248 -15.91965 -15.62686 -15.52431 -15.30776 -15.19487 -14.79740 -14.60229 -14.35251 -14.06713 -14.04558 -13.79703 -13.68119 -13.34026 -13.29561 -13.02701 -12.87810 -12.57906 -12.21320 -12.18987 -12.04915 -11.91981 -11.84818 -11.64304 -11.44409 -11.24648 -11.04438 -11.01500 -10.74589 -10.23261 -10.08509 -9.51390 -8.92208 -7.84699 -5.22376 -0.70131 0.17801 0.69729 1.09104 1.44181 1.46804 1.55474 1.76876 1.89090 2.09843 2.49274 2.72689 3.27144 3.33651 3.34661 3.51800 3.65630 3.69990 3.79350 3.85764 3.93881 4.06579 4.11102 4.13712 4.32867 4.43161 4.50411 4.63516 4.74724 4.82665 4.90746 4.91141 4.94308 5.08877 5.09864 5.15397 5.19921 5.26148 5.30968 5.32308 5.45649 5.48113 5.52410 5.63386 5.79202 5.90121 6.16983 6.55616 6.90479 7.06532 7.23061 7.76304 8.39635 9.24238 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002334 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.370355 B =11995.883339 C =12885.604030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.089 0.911 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.979 3.021 11 H -0.282 1.282 12 H -0.300 1.300 13 H -0.266 1.266 14 C 0.188 3.812 15 C 0.136 3.864 16 H 0.073 0.927 17 N -0.692 5.692 18 C 0.551 3.449 19 O -0.584 6.584 20 C -0.145 4.145 21 C -0.048 4.048 22 C -0.127 4.127 23 C 0.165 3.835 24 N -0.343 5.343 25 C 0.273 3.727 26 N -0.562 5.562 27 C 0.208 3.792 28 N -0.351 5.351 29 C -0.123 4.123 30 C -0.047 4.047 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.243 0.757 37 H 0.019 0.981 38 H -0.013 1.013 39 H 0.415 0.585 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.270 0.730 43 H 0.251 0.749 44 H 0.186 0.814 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 17.372 13.032 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.107 0.893 8 C -0.264 4.264 9 N -0.602 5.602 10 Si 0.808 3.192 11 H -0.208 1.208 12 H -0.227 1.227 13 H -0.191 1.191 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.091 0.909 17 N -0.343 5.343 18 C 0.340 3.660 19 O -0.465 6.465 20 C -0.149 4.149 21 C -0.068 4.068 22 C -0.147 4.147 23 C 0.072 3.928 24 N -0.126 5.126 25 C -0.021 4.021 26 N -0.288 5.288 27 C -0.093 4.093 28 N -0.176 5.176 29 C -0.143 4.143 30 C -0.066 4.066 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.005 0.995 39 H 0.253 0.747 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.285 0.715 43 H 0.267 0.733 44 H 0.204 0.796 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.482 16.076 13.532 23.946 hybrid contribution 1.343 -0.819 -0.413 1.626 sum -10.140 15.257 13.120 22.532 Atomic orbital electron populations 1.21670 0.91623 1.02240 1.03226 1.22544 0.97306 0.99056 0.92203 0.88388 1.21884 0.85129 0.95824 0.96591 1.44734 1.09524 1.79220 1.01971 1.19508 0.90051 1.37421 0.89845 0.89329 1.25724 1.00750 1.02509 0.97401 1.70235 1.24074 1.54754 1.11100 0.85061 0.78931 0.77294 0.77956 1.20847 1.22743 1.19106 1.21103 0.92735 0.96511 0.83489 1.22085 0.96464 0.93653 0.84839 0.90932 1.45604 1.73158 1.10847 1.04711 1.18677 0.75676 0.87546 0.84127 1.90781 1.51904 1.16831 1.86947 1.19987 1.07482 0.94808 0.92626 1.21130 0.94254 1.00815 0.90611 1.20818 1.02646 0.91523 0.99753 1.17943 1.00537 0.89928 0.84422 1.47776 1.53331 1.06661 1.04877 1.27233 0.93180 0.82858 0.98813 1.70700 1.25156 1.31976 1.00930 1.26856 0.95521 0.84159 1.02800 1.78144 1.27375 1.25058 0.87032 1.21122 1.02381 1.02856 0.87920 1.21457 0.94035 0.90459 1.00608 0.91039 0.90226 0.93272 0.92445 0.95851 0.94758 0.96312 0.99475 0.74668 0.85114 0.84320 0.71490 0.73307 0.79640 0.81134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.31 71.98 0.67 -2.06 16 2 C -0.09 -2.65 3.25 -9.40 -0.03 -2.68 16 3 H 0.10 2.50 8.00 -2.38 -0.02 2.48 16 4 C 0.13 4.98 6.70 86.85 0.58 5.56 16 5 N -0.63 -32.18 3.39 -691.98 -2.35 -34.53 16 6 C -0.24 -13.43 10.28 84.03 0.86 -12.56 16 7 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 8 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 9 N -0.95 -59.60 10.31 21.65 0.22 -59.38 16 10 Si 0.98 46.48 29.55 68.60 2.03 48.50 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.19 9.61 5.12 86.73 0.44 10.06 16 15 C 0.14 5.01 2.70 46.18 0.12 5.13 16 16 H 0.07 2.94 7.59 -2.39 -0.02 2.92 16 17 N -0.69 -20.39 5.08 -439.96 -2.23 -22.62 16 18 C 0.55 18.30 7.76 86.73 0.67 18.98 16 19 O -0.58 -25.52 16.06 -3.95 -0.06 -25.58 16 20 C -0.15 -3.55 5.88 -20.08 -0.12 -3.67 16 21 C -0.05 -1.21 9.58 22.51 0.22 -0.99 16 22 C -0.13 -2.73 9.66 22.34 0.22 -2.51 16 23 C 0.17 2.86 6.70 38.25 0.26 3.11 16 24 N -0.34 -5.92 3.81 -191.16 -0.73 -6.65 16 25 C 0.27 3.32 11.97 180.25 2.16 5.48 16 26 N -0.56 -9.21 11.19 -203.69 -2.28 -11.49 16 27 C 0.21 3.34 13.03 180.75 2.35 5.69 16 28 N -0.35 -7.17 12.03 -61.21 -0.74 -7.91 16 29 C -0.12 -1.38 9.45 22.34 0.21 -1.17 16 30 C -0.05 -0.69 9.53 22.50 0.21 -0.48 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.12 8.07 -2.39 -0.02 1.11 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.02 0.90 7.98 -2.38 -0.02 0.88 16 36 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.02 1.06 7.27 -2.39 -0.02 1.04 16 38 H -0.01 -0.81 7.50 -2.39 -0.02 -0.83 16 39 H 0.41 8.50 6.54 -92.71 -0.61 7.90 16 40 H 0.13 3.59 7.64 -2.91 -0.02 3.57 16 41 H 0.14 3.01 7.72 -2.91 -0.02 2.99 16 42 H 0.27 0.24 7.08 -2.91 -0.02 0.22 16 43 H 0.25 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.19 0.29 6.79 -2.91 -0.02 0.27 16 45 H 0.17 1.44 6.39 -2.91 -0.02 1.42 16 Total: -1.00 -86.96 376.38 3.59 -83.38 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.42 Total: 12.05 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 9.30 Total: 24.22 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -8.10 Total: -142.57 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -86.96 3.59 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079896074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.836 kcal (2) G-P(sol) polarization free energy of solvation -86.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds