Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.63916 * 2 1 4 4 C 1.54332 * 110.71633 * 236.66682 * 2 1 3 5 5 N 1.47019 * 107.26924 * 219.43846 * 4 2 1 6 6 C 1.36937 * 125.64533 * 178.97142 * 5 4 2 7 7 H 1.07995 * 120.00154 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99529 * 180.02562 * 6 5 4 9 9 N 1.31615 * 120.00307 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99692 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47093 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46864 * 120.00016 * 10 8 6 13 13 H 1.48499 * 109.46941 * 240.00304 * 10 8 6 14 14 C 1.47469 * 108.72490 * 358.97869 * 5 4 2 15 15 C 1.54913 * 104.80928 * 24.06845 * 14 5 4 16 16 H 1.08996 * 111.00725 * 81.13925 * 15 14 5 17 17 N 1.46504 * 111.00457 * 204.95188 * 15 14 5 18 18 C 1.34777 * 119.99858 * 270.42041 * 17 15 14 19 19 O 1.21523 * 119.99904 * 359.97438 * 18 17 15 20 20 C 1.48159 * 119.99867 * 180.27154 * 18 17 15 21 21 C 1.39232 * 119.68377 * 179.44538 * 20 18 17 22 22 C 1.38715 * 119.18285 * 179.77498 * 21 20 18 23 23 C 1.38400 * 118.55992 * 0.49587 * 22 21 20 24 24 C 1.39261 * 119.30273 * 359.74639 * 23 22 21 25 25 N 1.39818 * 119.61895 * 179.97438 * 24 23 22 26 26 C 1.37189 * 126.48475 * 180.02562 * 25 24 23 27 27 C 1.34612 * 106.82490 * 179.97438 * 26 25 24 28 28 N 1.34151 * 108.22430 * 359.97438 * 27 26 25 29 29 C 1.30482 * 109.36863 * 359.74766 * 28 27 26 30 30 N 1.31973 * 120.75802 * 0.02562 * 24 23 22 31 31 H 1.09004 * 109.46587 * 296.85090 * 1 2 3 32 32 H 1.08994 * 109.47341 * 56.85231 * 1 2 3 33 33 H 1.09000 * 109.47260 * 176.86239 * 1 2 3 34 34 H 1.08996 * 109.88074 * 338.85742 * 4 2 1 35 35 H 1.09002 * 109.87912 * 100.02254 * 4 2 1 36 36 H 0.97000 * 120.00350 * 180.02562 * 9 8 6 37 37 H 1.08997 * 110.34970 * 265.25221 * 14 5 4 38 38 H 1.09006 * 110.40687 * 142.91052 * 14 5 4 39 39 H 0.97001 * 120.00416 * 90.41142 * 17 15 14 40 40 H 1.07992 * 120.40725 * 0.02562 * 21 20 18 41 41 H 1.08006 * 120.71909 * 180.24622 * 22 21 20 42 42 H 1.08000 * 120.35109 * 179.77595 * 23 22 21 43 43 H 1.07997 * 126.58722 * 359.95686 * 26 25 24 44 44 H 1.07997 * 125.89036 * 180.02562 * 27 26 25 45 45 H 1.08006 * 125.72281 * 180.24645 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2061 5 7 3.2445 -1.5519 -0.7366 6 6 4.0042 -2.3995 -1.4980 7 1 3.7613 -2.5546 -2.5388 8 6 5.0864 -3.0592 -0.9320 9 7 5.3821 -2.8706 0.3366 10 14 6.1232 -4.2149 -1.9709 11 1 5.5865 -4.2523 -3.3550 12 1 7.5271 -3.7314 -1.9977 13 1 6.0805 -5.5791 -1.3859 14 6 3.4633 -1.2495 0.6901 15 6 2.0790 -0.7935 1.2150 16 1 1.4449 -1.6508 1.4406 17 7 2.2215 0.0736 2.3873 18 6 2.2519 -0.4636 3.6230 19 8 2.1605 -1.6670 3.7648 20 6 2.3899 0.4138 4.8089 21 6 2.4089 -0.1472 6.0831 22 6 2.5433 0.6835 7.1859 23 6 2.6438 2.0481 6.9780 24 6 2.6127 2.5435 5.6768 25 7 2.7132 3.9209 5.4592 26 6 2.6979 4.5582 4.2444 27 6 2.8188 5.8754 4.4938 28 7 2.9054 6.0448 5.8218 29 6 2.8377 4.8828 6.4115 30 7 2.4884 1.7277 4.6469 31 1 -0.3633 0.4642 0.9169 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0562 34 1 1.3129 -1.4785 -1.5751 35 1 2.3739 -0.1057 -1.9977 36 1 6.1386 -3.3313 0.7320 37 1 4.1936 -0.4478 0.7999 38 1 3.7953 -2.1417 1.2211 39 1 2.2942 1.0342 2.2741 40 1 2.3240 -1.2161 6.2111 41 1 2.5650 0.2746 8.1853 42 1 2.7459 2.7217 7.8160 43 1 2.6067 4.0924 3.2743 44 1 2.8413 6.6607 3.7528 45 1 2.8772 4.7134 7.4775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080011985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 107.498952 kcal Electronic energy + Delta-G solvation = -29069.052699 eV Core-core repulsion = 25089.094610 eV Total energy + Delta-G solvation = -3979.958089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65449 -40.74527 -39.18133 -37.51776 -34.53384 -34.12538 -33.24959 -32.48379 -30.54195 -30.37913 -29.68114 -27.91088 -25.73036 -25.11701 -24.44355 -23.54494 -21.88932 -21.36148 -20.67697 -20.11883 -19.78532 -18.87822 -17.56199 -16.96723 -16.52051 -16.37388 -16.12709 -15.72964 -15.04011 -14.78298 -14.70961 -14.29024 -14.12483 -13.93772 -13.76962 -13.64570 -13.58775 -13.03978 -12.92979 -12.57945 -12.49834 -12.27779 -11.73921 -11.25882 -11.13275 -11.09081 -10.82119 -10.74593 -10.60839 -10.43553 -10.40771 -10.37350 -9.98741 -9.82976 -9.78036 -9.68829 -9.16584 -8.80775 -8.66550 -8.52491 -6.85064 -5.64291 -3.07877 0.13993 0.50893 1.82733 2.03483 2.73246 2.82915 3.15763 3.40611 3.45567 3.48518 3.61909 3.75168 4.06221 4.27730 4.44727 4.47930 4.56838 4.59125 4.94399 5.02895 5.08983 5.11206 5.28732 5.29927 5.41830 5.45359 5.52405 5.61530 5.72300 5.79880 5.92686 5.96067 6.01573 6.12928 6.19127 6.34968 6.36288 6.44421 6.64528 6.70721 6.73922 6.90838 7.18269 7.43119 7.61370 7.64029 7.77324 7.88747 8.33704 8.39376 9.20508 9.81930 10.44827 11.38771 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002770 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.332632 B =10107.593184 C =10580.929424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.225 4.225 7 H 0.080 0.920 8 C -0.010 4.010 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.150 3.850 15 C 0.116 3.884 16 H 0.094 0.906 17 N -0.688 5.688 18 C 0.565 3.435 19 O -0.519 6.519 20 C 0.127 3.873 21 C -0.122 4.122 22 C -0.051 4.051 23 C -0.164 4.164 24 C 0.343 3.657 25 N -0.410 5.410 26 C -0.021 4.021 27 C -0.031 4.031 28 N -0.478 5.478 29 C 0.190 3.810 30 N -0.474 5.474 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.252 0.748 37 H 0.014 0.986 38 H 0.113 0.887 39 H 0.404 0.596 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.184 0.816 44 H 0.177 0.823 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 12.965 14.665 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.353 4.353 7 H 0.098 0.902 8 C -0.206 4.206 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.024 3.976 15 C 0.011 3.989 16 H 0.112 0.888 17 N -0.337 5.337 18 C 0.348 3.652 19 O -0.394 6.394 20 C -0.013 4.013 21 C -0.143 4.143 22 C -0.077 4.077 23 C -0.187 4.187 24 C 0.113 3.887 25 N -0.093 5.093 26 C -0.151 4.151 27 C -0.176 4.176 28 N -0.195 5.195 29 C -0.091 4.091 30 N -0.189 5.189 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.130 0.870 39 H 0.239 0.761 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.165 0.835 43 H 0.201 0.799 44 H 0.194 0.806 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.685 12.964 14.238 21.123 hybrid contribution 0.670 -1.005 -0.204 1.225 sum -8.015 11.959 14.033 20.104 Atomic orbital electron populations 1.21747 0.94891 1.01927 1.00947 1.22430 0.95289 0.99221 0.96089 0.90724 1.21344 0.90276 0.93172 0.93679 1.44407 1.30900 1.50457 1.07171 1.19112 1.06240 1.17015 0.92962 0.90235 1.24824 0.98793 1.00578 0.96408 1.69802 1.29925 1.46035 1.10861 0.85996 0.79987 0.80432 0.79056 1.20491 1.21777 1.21685 1.22241 0.89082 1.01158 0.85164 1.22829 1.01411 0.92301 0.82309 0.88797 1.45740 1.71555 1.11154 1.05294 1.17662 0.78089 0.86876 0.82556 1.90849 1.49547 1.13484 1.85531 1.21212 0.97322 0.87956 0.94761 1.22264 0.97575 1.03086 0.91403 1.21537 0.94108 0.91879 1.00157 1.21730 1.03996 0.97272 0.95668 1.18075 0.97730 0.82964 0.89928 1.43133 1.53720 1.03793 1.08617 1.23016 1.08348 0.93529 0.90179 1.22413 1.07428 0.94861 0.92882 1.70329 1.18364 1.23661 1.07165 1.25307 1.05498 0.81896 0.96422 1.66821 1.13725 1.04457 1.33889 0.93150 0.92764 0.92410 0.95361 0.95770 0.93722 0.96826 0.86951 0.76135 0.82277 0.82772 0.83515 0.79916 0.80590 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.16 37.16 0.34 -1.53 16 2 C -0.11 -1.85 3.19 -88.78 -0.28 -2.13 16 3 H 0.07 1.15 7.99 -51.93 -0.42 0.73 16 4 C 0.14 2.89 6.84 -3.06 -0.02 2.87 16 5 N -0.60 -15.49 3.40 -170.03 -0.58 -16.07 16 6 C -0.23 -6.31 10.27 -15.06 -0.15 -6.46 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -27.33 10.09 55.49 0.56 -26.77 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 C 0.15 3.69 5.58 -2.50 -0.01 3.68 16 15 C 0.12 2.23 2.81 -65.78 -0.19 2.05 16 16 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 17 N -0.69 -11.28 5.20 -52.57 -0.27 -11.55 16 18 C 0.57 9.50 7.81 -12.19 -0.10 9.40 16 19 O -0.52 -10.44 16.01 5.35 0.09 -10.35 16 20 C 0.13 1.69 6.75 -83.02 -0.56 1.13 16 21 C -0.12 -1.27 9.63 -39.04 -0.38 -1.65 16 22 C -0.05 -0.36 10.16 -39.35 -0.40 -0.76 16 23 C -0.16 -1.20 9.50 -39.14 -0.37 -1.57 16 24 C 0.34 3.57 7.51 -154.53 -1.16 2.41 16 25 N -0.41 -4.19 2.98 -63.81 -0.19 -4.38 16 26 C -0.02 -0.22 11.17 -16.44 -0.18 -0.40 16 27 C -0.03 -0.32 11.85 -17.82 -0.21 -0.53 16 28 N -0.48 -5.40 11.24 -14.47 -0.16 -5.56 16 29 C 0.19 1.72 11.90 -89.58 -1.07 0.66 16 30 N -0.47 -5.87 9.07 -8.85 -0.08 -5.95 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 34 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 3.25 5.88 -51.93 -0.31 2.94 16 39 H 0.40 5.77 7.86 -40.82 -0.32 5.45 16 40 H 0.16 1.61 7.63 -52.49 -0.40 1.20 16 41 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 42 H 0.15 0.55 6.75 -52.49 -0.35 0.20 16 43 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 45 H 0.21 0.99 7.04 -52.48 -0.37 0.62 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -35.04 377.87 -10.69 -45.73 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.88 Total: 5.15 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -4.84 Total: 6.78 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.72 Total: -70.28 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.04 -10.69 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080011985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.230 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds