Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.91506 * 2 1 4 4 C 1.54913 * 111.00112 * 236.10084 * 2 1 3 5 5 N 1.47421 * 104.83003 * 204.91307 * 4 2 1 6 6 C 1.36936 * 125.65032 * 204.08965 * 5 4 2 7 7 H 1.08004 * 119.99926 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00372 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00175 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47085 * 59.99926 * 10 8 6 12 12 H 1.48502 * 109.47039 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47116 * 299.99809 * 10 8 6 14 14 C 1.47027 * 108.70378 * 24.13257 * 5 4 2 15 15 C 1.54320 * 107.26937 * 358.93338 * 14 5 4 16 16 H 1.09002 * 110.71944 * 96.35139 * 15 14 5 17 17 N 1.46504 * 110.72136 * 219.44482 * 15 14 5 18 18 C 1.34772 * 120.00294 * 273.54995 * 17 15 14 19 19 O 1.21602 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.47503 * 120.00168 * 179.97438 * 18 17 15 21 21 C 1.36625 * 125.77063 * 179.97438 * 20 18 17 22 22 N 1.35069 * 106.79647 * 179.73774 * 21 20 18 23 23 C 1.40228 * 126.61366 * 179.97438 * 22 21 20 24 24 C 1.38829 * 120.06561 * 359.73101 * 23 22 21 25 25 C 1.38120 * 119.93184 * 179.69690 * 24 23 22 26 26 C 1.38278 * 120.06712 * 0.59668 * 25 24 23 27 27 C 1.38276 * 120.12963 * 359.67553 * 26 25 24 28 28 C 1.38122 * 120.06736 * 0.02562 * 27 26 25 29 29 N 1.40215 * 106.77770 * 0.02562 * 22 21 20 30 30 N 1.28761 * 108.38236 * 359.97438 * 29 22 21 31 31 H 1.09006 * 109.46690 * 296.09510 * 1 2 3 32 32 H 1.08999 * 109.47443 * 56.09379 * 1 2 3 33 33 H 1.08998 * 109.47385 * 176.09937 * 1 2 3 34 34 H 1.09000 * 110.36584 * 86.07610 * 4 2 1 35 35 H 1.09002 * 110.46113 * 323.79933 * 4 2 1 36 36 H 0.97000 * 120.00137 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.87685 * 239.52013 * 14 5 4 38 38 H 1.08996 * 110.01562 * 118.43035 * 14 5 4 39 39 H 0.97001 * 119.99247 * 93.55194 * 17 15 14 40 40 H 1.08004 * 126.59823 * 359.70368 * 21 20 18 41 41 H 1.08002 * 120.02958 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.96470 * 180.29610 * 25 24 23 43 43 H 1.08006 * 119.93279 * 179.70163 * 26 25 24 44 44 H 1.07998 * 119.96180 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.02980 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4640 -1.5666 -1.6073 7 1 4.3332 -1.5117 -2.6780 8 6 5.6830 -1.9653 -1.0766 9 7 5.8426 -2.0318 0.2282 10 14 7.0976 -2.4061 -2.2142 11 1 7.4398 -1.2319 -3.0564 12 1 8.2804 -2.7959 -1.4051 13 1 6.6975 -3.5403 -3.0851 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8079 1.2021 16 1 1.4479 -1.6632 1.4238 17 7 2.2288 0.0495 2.3815 18 6 2.3024 -0.5005 3.6097 19 8 2.2500 -1.7085 3.7389 20 6 2.4464 0.3628 4.7970 21 6 2.5313 -0.0668 6.0911 22 7 2.6593 1.0358 6.8608 23 6 2.7788 1.0715 8.2575 24 6 2.7669 -0.1096 8.9870 25 6 2.8911 -0.0716 10.3621 26 6 3.0150 1.1420 11.0132 27 6 3.0215 2.3204 10.2898 28 6 2.9038 2.2884 8.9139 29 7 2.6483 2.1379 5.9940 30 7 2.5219 1.7048 4.7880 31 1 -0.3633 0.4521 0.9230 32 1 -0.3634 0.5733 -0.8529 33 1 -0.3634 -1.0252 -0.0699 34 1 2.1559 -0.1719 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.6946 -2.3101 0.5991 37 1 4.2427 -0.5998 1.0597 38 1 3.6663 -2.2884 1.0422 39 1 2.2702 1.0131 2.2782 40 1 2.5013 -1.0909 6.4330 41 1 2.6650 -1.0574 8.4794 42 1 2.8867 -0.9903 10.9297 43 1 3.1071 1.1695 12.0890 44 1 3.1188 3.2667 10.8010 45 1 2.9086 3.2091 8.3495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080029779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 123.224892 kcal Electronic energy + Delta-G solvation = -28481.857969 eV Core-core repulsion = 24502.581808 eV Total energy + Delta-G solvation = -3979.276161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.57960 -39.76725 -39.21885 -37.39901 -34.95600 -33.84325 -32.56648 -31.85726 -31.01578 -30.32196 -30.10516 -27.75079 -25.60961 -24.76033 -24.36025 -23.48809 -22.40506 -21.73420 -20.59427 -19.96247 -19.71406 -18.75359 -17.12499 -16.84297 -16.33146 -16.29539 -15.95124 -15.52994 -15.22664 -14.91051 -14.44090 -14.27364 -14.15550 -14.01944 -13.69941 -13.40146 -13.10615 -12.74368 -12.66263 -12.54483 -12.26197 -11.94986 -11.69388 -11.64923 -11.49996 -11.44254 -11.28203 -10.97918 -10.72097 -10.58126 -10.38102 -9.93228 -9.90413 -9.79224 -9.67616 -9.62512 -9.60450 -8.90937 -8.56776 -8.43240 -6.77943 -5.63631 -2.98820 0.10425 0.74798 1.44092 1.68136 1.69316 3.19557 3.36480 3.45083 3.48842 3.50571 3.52927 3.98789 4.08320 4.29187 4.50505 4.53516 4.57028 4.70268 4.77493 4.84916 5.01408 5.09941 5.13645 5.36989 5.41021 5.49747 5.57090 5.60876 5.74552 5.81184 5.85292 5.92143 6.04076 6.05046 6.05974 6.20959 6.24060 6.40002 6.46379 6.54578 6.68082 6.79500 6.98688 7.55954 7.62858 7.71889 7.90467 7.97256 8.31318 8.51780 9.27026 9.87913 10.52990 11.46931 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.002367 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.141686 B =11826.238151 C =12943.811189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.089 0.911 17 N -0.694 5.694 18 C 0.601 3.399 19 O -0.533 6.533 20 C -0.081 4.081 21 C 0.091 3.909 22 N -0.315 5.315 23 C 0.138 3.862 24 C -0.125 4.125 25 C -0.095 4.095 26 C -0.117 4.117 27 C -0.099 4.099 28 C -0.106 4.106 29 N -0.060 5.060 30 N -0.194 5.194 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.404 0.596 40 H 0.208 0.792 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 7.757 21.657 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.097 0.903 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.343 5.343 18 C 0.384 3.616 19 O -0.409 6.409 20 C -0.219 4.219 21 C -0.062 4.062 22 N -0.094 5.094 23 C 0.046 3.954 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.136 4.136 27 C -0.117 4.117 28 C -0.126 4.126 29 N -0.038 5.038 30 N -0.068 5.068 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.239 0.761 40 H 0.225 0.775 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.756 8.315 21.564 25.086 hybrid contribution 0.919 -0.820 -0.394 1.293 sum -8.837 7.494 21.169 24.133 Atomic orbital electron populations 1.21704 0.94995 1.01763 1.01067 1.22621 0.94871 0.99665 0.96203 0.90253 1.21588 0.87616 0.95003 0.94310 1.44397 1.07874 1.79211 1.01773 1.18996 0.89353 1.38575 0.88889 0.90375 1.24829 0.97873 1.01774 0.95997 1.69966 1.24218 1.53221 1.09186 0.86200 0.81881 0.78233 0.79428 1.21216 1.21673 1.21167 1.21479 0.89945 1.00469 0.83346 1.22569 1.00527 0.92657 0.82654 0.89271 1.45719 1.72401 1.10834 1.05321 1.16621 0.77063 0.86265 0.81634 1.90828 1.51008 1.13221 1.85854 1.21673 1.15090 0.90403 0.94775 1.23381 0.97951 0.94439 0.90471 1.47622 1.48750 1.06704 1.06318 1.17649 1.04196 0.95903 0.77659 1.21021 1.02202 0.96544 0.94856 1.21057 0.98463 0.98816 0.93053 1.21360 0.99242 0.92326 1.00664 1.21127 0.98620 0.99132 0.92837 1.21000 0.99961 0.96638 0.94979 1.82041 1.22688 1.06616 0.92498 1.74659 1.09148 1.09807 1.13174 0.93051 0.92741 0.92575 0.93963 0.95989 0.93724 0.93095 0.93277 0.76122 0.77542 0.84556 0.84508 0.85038 0.84619 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.31 37.16 0.35 -1.54 16 2 C -0.11 -1.96 3.25 -88.47 -0.29 -2.25 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 4 C 0.14 2.92 6.70 -2.53 -0.02 2.91 16 5 N -0.61 -15.81 3.39 -170.07 -0.58 -16.39 16 6 C -0.23 -6.54 10.28 -15.06 -0.15 -6.69 16 7 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.99 10.31 55.49 0.57 -27.42 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.17 4.40 5.12 -3.06 -0.02 4.38 16 15 C 0.12 2.37 2.70 -66.10 -0.18 2.19 16 16 H 0.09 1.81 7.59 -51.93 -0.39 1.41 16 17 N -0.69 -12.22 5.13 -53.08 -0.27 -12.49 16 18 C 0.60 10.83 7.81 -12.49 -0.10 10.73 16 19 O -0.53 -11.02 16.59 5.28 0.09 -10.93 16 20 C -0.08 -1.26 6.99 -83.54 -0.58 -1.84 16 21 C 0.09 1.13 10.60 -16.71 -0.18 0.96 16 22 N -0.32 -3.81 3.82 -10.42 -0.04 -3.85 16 23 C 0.14 1.31 6.70 -83.58 -0.56 0.76 16 24 C -0.13 -0.92 9.47 -39.41 -0.37 -1.29 16 25 C -0.10 -0.52 10.04 -39.61 -0.40 -0.92 16 26 C -0.12 -0.59 10.04 -39.55 -0.40 -0.99 16 27 C -0.10 -0.58 10.04 -39.61 -0.40 -0.97 16 28 C -0.11 -0.87 9.68 -39.41 -0.38 -1.25 16 29 N -0.06 -0.85 13.12 60.35 0.79 -0.06 16 30 N -0.19 -3.00 12.03 32.85 0.40 -2.61 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 36 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.05 1.44 7.27 -51.93 -0.38 1.06 16 38 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 39 H 0.40 6.42 8.20 -40.82 -0.33 6.08 16 40 H 0.21 1.94 7.13 -52.48 -0.37 1.57 16 41 H 0.14 0.79 6.81 -52.49 -0.36 0.44 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.14 1.17 7.73 -52.49 -0.41 0.77 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -35.04 380.53 -8.07 -43.10 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.97 Total: 3.45 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -3.77 Total: 3.84 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.87 Total: -62.81 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.04 -8.07 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080029779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.327 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds