Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.78085 * 2 1 4 4 C 1.54326 * 110.72034 * 236.76076 * 2 1 3 5 5 N 1.47283 * 107.30758 * 219.45548 * 4 2 1 6 6 C 1.36940 * 125.79385 * 178.92945 * 5 4 2 7 7 H 1.07998 * 120.00050 * 341.51182 * 6 5 4 8 8 C 1.38813 * 119.99845 * 161.52064 * 6 5 4 9 9 N 1.31625 * 119.99502 * 157.60351 * 8 6 5 10 10 Si 1.86792 * 120.00162 * 337.60447 * 8 6 5 11 11 H 1.48498 * 109.47196 * 84.54220 * 10 8 6 12 12 H 1.48510 * 109.47106 * 204.53762 * 10 8 6 13 13 H 1.48492 * 109.47267 * 324.53766 * 10 8 6 14 14 C 1.47426 * 108.55833 * 358.92209 * 5 4 2 15 15 C 1.54908 * 104.92948 * 24.15781 * 14 5 4 16 16 H 1.09002 * 111.00351 * 81.04586 * 15 14 5 17 17 N 1.46501 * 111.00655 * 204.86061 * 15 14 5 18 18 C 1.34768 * 119.99654 * 273.54684 * 17 15 14 19 19 O 1.21613 * 120.00620 * 359.97438 * 18 17 15 20 20 C 1.47320 * 119.99697 * 180.02562 * 18 17 15 21 21 C 1.37921 * 126.80622 * 359.67830 * 20 18 17 22 22 N 1.34190 * 107.89402 * 179.89913 * 21 20 18 23 23 H 0.96999 * 125.16980 * 180.14338 * 22 21 20 24 24 N 1.39779 * 109.66718 * 0.37985 * 22 21 20 25 25 C 1.31376 * 109.06988 * 359.76850 * 24 22 21 26 26 C 1.48262 * 126.50938 * 180.02562 * 25 24 22 27 27 C 1.39818 * 120.90987 * 144.69188 * 26 25 24 28 28 C 1.37963 * 119.01358 * 179.74727 * 27 26 25 29 29 N 1.31930 * 120.88604 * 0.53751 * 28 27 26 30 30 C 1.31925 * 122.01839 * 359.71158 * 29 28 27 31 31 C 1.37961 * 120.88223 * 0.02628 * 30 29 28 32 32 H 1.09001 * 109.47325 * 296.76030 * 1 2 3 33 33 H 1.09003 * 109.47216 * 56.76437 * 1 2 3 34 34 H 1.08998 * 109.46951 * 176.75833 * 1 2 3 35 35 H 1.09004 * 109.87914 * 338.86221 * 4 2 1 36 36 H 1.09000 * 109.88029 * 99.86923 * 4 2 1 37 37 H 0.97002 * 119.99552 * 179.97438 * 9 8 6 38 38 H 1.09001 * 110.36505 * 265.26095 * 14 5 4 39 39 H 1.09001 * 110.36209 * 143.05158 * 14 5 4 40 40 H 0.96998 * 119.99523 * 93.54312 * 17 15 14 41 41 H 1.08004 * 126.05187 * 0.02562 * 21 20 18 42 42 H 1.08000 * 120.48751 * 359.97438 * 27 26 25 43 43 H 1.08002 * 119.55626 * 180.22575 * 28 27 26 44 44 H 1.07991 * 119.55881 * 179.97438 * 30 29 28 45 45 H 1.08008 * 120.49308 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2465 -1.5527 -0.7390 6 6 4.0072 -2.4002 -1.4994 7 1 3.6165 -2.7908 -2.4274 8 6 5.2805 -2.7573 -1.0775 9 7 5.8360 -3.8634 -1.5252 10 14 6.2055 -1.6683 0.1257 11 1 5.7957 -2.0039 1.5130 12 1 7.6658 -1.8912 -0.0267 13 1 5.8905 -0.2441 -0.1527 14 6 3.4632 -1.2498 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 1.4454 -1.6536 1.4381 17 7 2.2215 0.0696 2.3875 18 6 2.3160 -0.4735 3.6173 19 8 2.2825 -1.6815 3.7528 20 6 2.4587 0.3965 4.7976 21 6 2.5173 1.7744 4.8063 22 7 2.6465 2.1736 6.0809 23 1 2.7090 3.0961 6.3739 24 7 2.6826 1.0577 6.9220 25 6 2.5733 -0.0313 6.1953 26 6 2.5662 -1.4275 6.6939 27 6 1.7750 -2.4046 6.0822 28 6 1.8024 -3.6929 6.5751 29 7 2.5530 -4.0045 7.6144 30 6 3.3099 -3.1119 8.2233 31 6 3.3461 -1.8019 7.7922 32 1 -0.3634 0.4627 0.9176 33 1 -0.3634 0.5633 -0.8596 34 1 -0.3633 -1.0260 -0.0581 35 1 1.3129 -1.4758 -1.5775 36 1 2.3715 -0.1025 -1.9988 37 1 6.7259 -4.1128 -1.2307 38 1 4.1932 -0.4479 0.7983 39 1 3.7969 -2.1415 1.2181 40 1 2.2478 1.0332 2.2794 41 1 2.4660 2.4182 3.9407 42 1 1.1544 -2.1553 5.2342 43 1 1.1975 -4.4554 6.1071 44 1 3.9085 -3.4105 9.0711 45 1 3.9678 -1.0762 8.2956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080035178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 109.492976 kcal Electronic energy + Delta-G solvation = -29580.089042 eV Core-core repulsion = 25600.217421 eV Total energy + Delta-G solvation = -3979.871622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55800 -39.81793 -39.50093 -37.72001 -34.30239 -33.69408 -32.78241 -31.28170 -31.03304 -30.77136 -30.65756 -27.88696 -26.17888 -24.50971 -24.04465 -23.49005 -22.68253 -21.12091 -20.56017 -20.36749 -19.71217 -18.62054 -16.95159 -16.78564 -16.57598 -16.16888 -16.06913 -15.77191 -15.28789 -15.12025 -14.52302 -14.22968 -14.05892 -13.89794 -13.74194 -13.57018 -13.36400 -13.16000 -13.01740 -12.90901 -12.22039 -12.02988 -11.85606 -11.80501 -11.39684 -11.22576 -11.14543 -10.70814 -10.70183 -10.45426 -10.28933 -9.99524 -9.92593 -9.48212 -9.45205 -9.40345 -9.10274 -8.90660 -8.80579 -8.59726 -7.04408 -5.93229 -3.23804 0.75254 1.16945 1.22268 2.09364 2.25459 3.19169 3.37321 3.41171 3.47681 3.51094 3.85152 3.92016 4.20388 4.49586 4.57334 4.66406 4.76977 4.89247 4.92805 5.02477 5.06638 5.12571 5.17522 5.22133 5.23068 5.50396 5.60317 5.66621 5.70024 5.72325 5.85697 5.87035 5.94414 6.09103 6.10846 6.22878 6.25316 6.42072 6.52320 6.64475 6.65786 6.69894 6.75478 6.80482 7.05364 7.61039 7.70825 7.98839 8.32587 8.34910 8.83975 9.70281 10.17294 11.22787 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.003766 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.047065 B = 7432.642744 C = 8452.551433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.607 5.607 6 C -0.244 4.244 7 H 0.094 0.906 8 C 0.026 3.974 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.283 1.283 12 H -0.302 1.302 13 H -0.279 1.279 14 C 0.105 3.895 15 C 0.138 3.862 16 H 0.102 0.898 17 N -0.715 5.715 18 C 0.588 3.412 19 O -0.526 6.526 20 C -0.270 4.270 21 C 0.107 3.893 22 N -0.462 5.462 23 H 0.445 0.555 24 N -0.276 5.276 25 C 0.169 3.831 26 C 0.013 3.987 27 C -0.102 4.102 28 C 0.092 3.908 29 N -0.479 5.479 30 C 0.085 3.915 31 C -0.144 4.144 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.393 0.607 41 H 0.191 0.809 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 15.178 16.095 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.015 3.985 5 N -0.334 5.334 6 C -0.371 4.371 7 H 0.111 0.889 8 C -0.173 4.173 9 N -0.549 5.549 10 Si 0.710 3.290 11 H -0.210 1.210 12 H -0.230 1.230 13 H -0.205 1.205 14 C -0.021 4.021 15 C 0.033 3.967 16 H 0.120 0.880 17 N -0.365 5.365 18 C 0.375 3.625 19 O -0.403 6.403 20 C -0.286 4.286 21 C -0.043 4.043 22 N -0.168 5.168 23 H 0.290 0.710 24 N -0.097 5.097 25 C 0.000 4.000 26 C 0.003 3.997 27 C -0.123 4.123 28 C -0.065 4.065 29 N -0.188 5.188 30 C -0.072 4.072 31 C -0.165 4.165 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.226 0.774 41 H 0.207 0.793 42 H 0.174 0.826 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.718 13.748 17.563 24.746 hybrid contribution 0.938 2.454 -0.536 2.681 sum -9.780 16.202 17.027 25.457 Atomic orbital electron populations 1.21741 0.94311 1.02311 1.01166 1.22451 0.95798 0.99192 0.95580 0.90503 1.21460 0.90200 0.93170 0.93693 1.44709 1.32701 1.51326 1.04644 1.18619 0.94883 1.18283 1.05282 0.88871 1.24971 0.96839 0.97276 0.98231 1.69843 1.16677 1.21423 1.46957 0.87010 0.78691 0.81763 0.81539 1.20994 1.23044 1.20492 1.22260 0.94018 0.99170 0.86658 1.22328 0.98505 0.93116 0.82773 0.87983 1.45777 1.74911 1.09842 1.05952 1.17122 0.76267 0.87349 0.81774 1.90786 1.50131 1.14060 1.85320 1.21388 1.21310 0.92069 0.93816 1.23051 0.96588 0.95396 0.89238 1.45946 1.57493 1.09195 1.04152 0.71014 1.77355 1.24372 0.91894 1.16094 1.21678 0.96469 0.92078 0.89772 1.17946 0.97597 0.88825 0.95307 1.22608 0.98189 0.93050 0.98422 1.22718 0.96304 0.95119 0.92310 1.67591 1.05594 1.37217 1.08387 1.22579 0.96651 0.88937 0.99009 1.22150 0.99729 0.98182 0.96429 0.92953 0.92516 0.92125 0.94357 0.94869 0.92671 0.95746 0.91734 0.77354 0.79266 0.82627 0.82341 0.82696 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.16 37.16 0.34 -1.17 16 2 C -0.11 -1.55 3.17 -88.78 -0.28 -1.83 16 3 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16 4 C 0.14 2.61 6.85 -2.92 -0.02 2.59 16 5 N -0.61 -14.59 3.22 -169.86 -0.55 -15.14 16 6 C -0.24 -6.98 10.58 -15.06 -0.16 -7.14 16 7 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 8 C 0.03 0.77 5.43 -17.43 -0.09 0.67 16 9 N -0.91 -28.48 13.97 55.49 0.78 -27.70 16 10 Si 0.88 23.34 24.27 -169.99 -4.13 19.21 16 11 H -0.28 -7.55 6.48 56.52 0.37 -7.19 16 12 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 13 H -0.28 -7.15 6.65 56.52 0.38 -6.77 16 14 C 0.11 2.33 4.38 -2.53 -0.01 2.31 16 15 C 0.14 2.26 2.76 -65.78 -0.18 2.07 16 16 H 0.10 1.81 7.63 -51.93 -0.40 1.41 16 17 N -0.71 -9.28 5.22 -52.83 -0.28 -9.56 16 18 C 0.59 8.61 7.71 -12.57 -0.10 8.51 16 19 O -0.53 -9.54 12.23 5.27 0.06 -9.48 16 20 C -0.27 -3.25 6.28 -102.94 -0.65 -3.90 16 21 C 0.11 0.80 11.50 -16.64 -0.19 0.61 16 22 N -0.46 -3.36 7.20 30.81 0.22 -3.14 16 23 H 0.45 1.47 8.96 -182.84 -1.64 -0.17 16 24 N -0.28 -3.12 12.65 34.57 0.44 -2.68 16 25 C 0.17 2.20 6.98 -80.57 -0.56 1.64 16 26 C 0.01 0.19 5.75 -104.60 -0.60 -0.42 16 27 C -0.10 -1.44 7.89 -39.09 -0.31 -1.74 16 28 C 0.09 1.26 11.17 -17.61 -0.20 1.06 16 29 N -0.48 -6.76 10.35 -13.35 -0.14 -6.90 16 30 C 0.09 1.04 11.17 -17.61 -0.20 0.84 16 31 C -0.14 -1.77 9.88 -39.09 -0.39 -2.16 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 38 H 0.03 0.56 5.57 -51.93 -0.29 0.28 16 39 H 0.06 1.65 6.63 -51.93 -0.34 1.31 16 40 H 0.39 3.58 7.47 -40.82 -0.30 3.28 16 41 H 0.19 0.56 7.48 -52.48 -0.39 0.16 16 42 H 0.16 2.25 5.77 -52.49 -0.30 1.95 16 43 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -37.83 368.35 -8.69 -46.52 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.06 Total: 1.36 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.60 Total: 1.96 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.47 Total: -65.12 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.13 Total: 19.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.83 -8.69 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080035178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.013 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds