Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.91548 * 2 1 4 4 C 1.54909 * 111.00365 * 236.10367 * 2 1 3 5 5 N 1.47422 * 104.83253 * 204.91274 * 4 2 1 6 6 C 1.36943 * 125.64943 * 204.08838 * 5 4 2 7 7 H 1.07995 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00087 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99693 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00106 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47078 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47041 * 120.00007 * 10 8 6 13 13 H 1.48502 * 109.47242 * 240.00339 * 10 8 6 14 14 C 1.47018 * 108.70425 * 24.13238 * 5 4 2 15 15 C 1.54321 * 107.26943 * 358.93574 * 14 5 4 16 16 H 1.09003 * 110.71899 * 96.35267 * 15 14 5 17 17 N 1.46503 * 110.72016 * 219.44599 * 15 14 5 18 18 C 1.34777 * 120.00178 * 273.54635 * 17 15 14 19 19 O 1.21574 * 119.99732 * 359.97438 * 18 17 15 20 20 C 1.47686 * 120.00264 * 180.02562 * 18 17 15 21 21 C 1.41562 * 126.44137 * 180.02562 * 20 18 17 22 22 C 1.35325 * 105.56112 * 180.02562 * 21 20 18 23 23 N 1.35907 * 107.11454 * 359.97438 * 22 21 20 24 24 C 1.39915 * 124.96454 * 179.97438 * 23 22 21 25 25 C 1.39326 * 120.85655 * 180.02562 * 24 23 22 26 26 C 1.38010 * 119.08208 * 180.02562 * 25 24 23 27 27 N 1.31934 * 120.83118 * 359.97438 * 26 25 24 28 28 C 1.31930 * 121.88705 * 0.02562 * 27 26 25 29 29 C 1.38018 * 120.83381 * 359.97438 * 28 27 26 30 30 N 1.28484 * 110.07151 * 0.26846 * 23 22 21 31 31 H 1.09003 * 109.47371 * 296.08996 * 1 2 3 32 32 H 1.09000 * 109.47502 * 56.09199 * 1 2 3 33 33 H 1.09001 * 109.47187 * 176.09161 * 1 2 3 34 34 H 1.09003 * 110.37014 * 86.07709 * 4 2 1 35 35 H 1.09000 * 110.46373 * 323.80419 * 4 2 1 36 36 H 0.96999 * 119.99722 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.88415 * 239.52075 * 14 5 4 38 38 H 1.08995 * 110.01480 * 118.42809 * 14 5 4 39 39 H 0.96999 * 119.99959 * 93.55327 * 17 15 14 40 40 H 1.08002 * 127.21674 * 0.03984 * 21 20 18 41 41 H 1.08000 * 126.44347 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.46116 * 0.04466 * 25 24 23 43 43 H 1.08004 * 119.58758 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.58052 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.46131 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4270 -1.2429 -0.7735 6 6 4.4639 -1.5665 -1.6074 7 1 4.3332 -1.5115 -2.6780 8 6 5.6831 -1.9653 -1.0767 9 7 5.8422 -2.0327 0.2281 10 14 7.0977 -2.4060 -2.2142 11 1 6.6650 -2.2486 -3.6261 12 1 8.2475 -1.5054 -1.9460 13 1 7.5051 -3.8138 -1.9750 14 6 3.4674 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4479 -1.6634 1.4237 17 7 2.2287 0.0493 2.3814 18 6 2.3023 -0.5008 3.6096 19 8 2.2499 -1.7085 3.7388 20 6 2.4454 0.3635 4.7986 21 6 2.5354 -0.0660 6.1444 22 6 2.6538 1.0644 6.8791 23 7 2.6352 2.1096 6.0106 24 6 2.7334 3.4568 6.3752 25 6 2.7044 4.4620 5.4109 26 6 2.8046 5.7789 5.8114 27 7 2.9260 6.0901 7.0877 28 6 2.9574 5.1674 8.0301 29 6 2.8628 3.8277 7.7119 30 7 2.5080 1.6801 4.8064 31 1 -0.3634 0.4520 0.9230 32 1 -0.3634 0.5733 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1559 -0.1718 -2.0837 35 1 1.4524 -1.6702 -1.4045 36 1 6.6940 -2.3117 0.5990 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2884 1.0420 39 1 2.2700 1.0130 2.2784 40 1 2.5144 -1.0825 6.5085 41 1 2.7457 1.1245 7.9535 42 1 2.6045 4.2141 4.3644 43 1 2.7834 6.5647 5.0707 44 1 3.0584 5.4641 9.0636 45 1 2.8888 3.0774 8.4882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080099708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 120.650249 kcal Electronic energy + Delta-G solvation = -28754.596179 eV Core-core repulsion = 24775.208373 eV Total energy + Delta-G solvation = -3979.387806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.18334 -40.45823 -39.31884 -37.42861 -34.72279 -33.90271 -32.62863 -32.10211 -30.92028 -30.58312 -30.34184 -27.85436 -25.68690 -25.18174 -24.35211 -23.61233 -22.40386 -21.50445 -20.48303 -19.95698 -19.43970 -18.99760 -17.22507 -16.84023 -16.51185 -16.47489 -16.34480 -15.80611 -15.34241 -14.95240 -14.43375 -14.31059 -14.15489 -14.00251 -13.89576 -13.69560 -13.44316 -13.06086 -12.76736 -12.62517 -12.26844 -11.97858 -11.67560 -11.31480 -11.18727 -11.10144 -10.99299 -10.77197 -10.60540 -10.35272 -10.14303 -9.95594 -9.89692 -9.80242 -9.77970 -9.65177 -9.55629 -8.99019 -8.59351 -8.45122 -6.80028 -5.65722 -3.01068 0.19432 0.55014 1.70994 1.92226 1.99993 3.29101 3.40328 3.43102 3.47791 3.50666 3.61555 3.86627 3.92685 4.18026 4.43874 4.48061 4.53215 4.61972 4.86063 5.01968 5.13261 5.17699 5.24817 5.33830 5.36429 5.46928 5.50666 5.56141 5.58581 5.78387 5.98560 6.00923 6.01543 6.14096 6.17734 6.22615 6.37246 6.50900 6.51668 6.65148 6.77489 6.95805 7.41742 7.47083 7.61275 7.64997 7.88539 7.95048 8.29060 8.52634 9.24960 9.85798 10.50683 11.44890 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002568 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.733911 B =10901.705587 C =11253.894765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.080 0.920 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.089 0.911 17 N -0.696 5.696 18 C 0.599 3.401 19 O -0.524 6.524 20 C 0.018 3.982 21 C -0.163 4.163 22 C -0.017 4.017 23 N -0.247 5.247 24 C 0.192 3.808 25 C -0.166 4.166 26 C 0.125 3.875 27 N -0.490 5.490 28 C 0.125 3.875 29 C -0.187 4.187 30 N -0.259 5.259 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.401 0.599 40 H 0.172 0.828 41 H 0.187 0.813 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.168 0.832 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.171 14.094 16.358 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.048 3.952 15 C 0.015 3.985 16 H 0.107 0.893 17 N -0.346 5.346 18 C 0.382 3.618 19 O -0.398 6.398 20 C -0.145 4.145 21 C -0.190 4.190 22 C -0.155 4.155 23 N -0.029 5.029 24 C 0.092 3.908 25 C -0.188 4.188 26 C -0.032 4.032 27 N -0.199 5.199 28 C -0.032 4.032 29 C -0.210 4.210 30 N -0.091 5.091 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.236 0.764 40 H 0.190 0.810 41 H 0.204 0.796 42 H 0.172 0.828 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.930 14.971 15.987 24.048 hybrid contribution 0.921 -1.436 -0.190 1.717 sum -9.009 13.535 15.797 22.669 Atomic orbital electron populations 1.21702 0.94998 1.01826 1.01003 1.22610 0.94854 0.99566 0.96271 0.90382 1.21588 0.87640 0.95026 0.94277 1.44419 1.07885 1.79205 1.01786 1.19088 0.89286 1.38453 0.88932 0.90264 1.24838 0.97899 1.01766 0.96002 1.69988 1.24076 1.53255 1.09171 0.86051 0.82418 0.77761 0.79561 1.20507 1.21841 1.21745 1.21475 0.89922 1.00508 0.83337 1.22567 1.00520 0.92685 0.82680 0.89284 1.45787 1.72687 1.10621 1.05471 1.16755 0.77198 0.86419 0.81452 1.90826 1.50118 1.13236 1.85608 1.22394 1.06843 0.89371 0.95916 1.21943 1.05934 0.99939 0.91179 1.23047 1.08334 0.86033 0.98127 1.42644 1.51368 1.04686 1.04191 1.17926 0.98284 0.80357 0.94245 1.22082 1.02634 0.92711 1.01390 1.22814 0.92990 0.94457 0.92922 1.67723 1.12513 1.38179 1.01524 1.22701 0.93504 0.87430 0.99582 1.21910 1.05596 0.99304 0.94193 1.73555 1.18998 1.13228 1.03280 0.93110 0.92747 0.92523 0.93969 0.95963 0.93801 0.93143 0.93250 0.76414 0.81024 0.79577 0.82779 0.81433 0.81538 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.31 37.15 0.35 -1.51 16 2 C -0.11 -1.92 3.25 -88.48 -0.29 -2.21 16 3 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 4 C 0.14 2.90 6.70 -2.53 -0.02 2.88 16 5 N -0.61 -15.76 3.39 -170.08 -0.58 -16.33 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 C 0.17 4.39 5.12 -3.07 -0.02 4.38 16 15 C 0.12 2.35 2.70 -66.10 -0.18 2.18 16 16 H 0.09 1.82 7.59 -51.93 -0.39 1.42 16 17 N -0.70 -12.13 5.13 -53.02 -0.27 -12.40 16 18 C 0.60 10.96 7.82 -12.40 -0.10 10.86 16 19 O -0.52 -11.28 16.65 5.30 0.09 -11.20 16 20 C 0.02 0.28 7.13 -82.75 -0.59 -0.31 16 21 C -0.16 -2.03 10.80 -39.35 -0.42 -2.45 16 22 C -0.02 -0.17 10.82 -16.78 -0.18 -0.35 16 23 N -0.25 -2.81 3.51 -10.37 -0.04 -2.85 16 24 C 0.19 1.81 6.70 -83.36 -0.56 1.26 16 25 C -0.17 -1.49 9.67 -39.26 -0.38 -1.87 16 26 C 0.12 0.97 11.17 -17.59 -0.20 0.77 16 27 N -0.49 -4.16 10.36 -13.32 -0.14 -4.29 16 28 C 0.13 0.81 11.17 -17.59 -0.20 0.62 16 29 C -0.19 -1.26 9.50 -39.26 -0.37 -1.63 16 30 N -0.26 -3.58 10.94 33.43 0.37 -3.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 1.42 7.27 -51.93 -0.38 1.04 16 38 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16 39 H 0.40 6.16 8.24 -40.82 -0.34 5.83 16 40 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.19 0.96 7.04 -52.49 -0.37 0.59 16 42 H 0.15 1.37 7.74 -52.48 -0.41 0.97 16 43 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 45 H 0.15 0.57 6.78 -52.49 -0.36 0.21 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -35.93 379.77 -8.66 -44.59 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.96 Total: 4.16 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -3.40 Total: 5.61 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.09 Total: -66.44 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.93 -8.66 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080099708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.244 kcal (2) G-P(sol) polarization free energy of solvation -35.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds