Wall clock time and date at job start Sat Apr 11 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 110.91548 * 2 1 4 4 C 1.54909 * 111.00365 * 236.10367 * 2 1 3 5 5 N 1.47422 * 104.83253 * 204.91274 * 4 2 1 6 6 C 1.36943 * 125.64943 * 204.08838 * 5 4 2 7 7 H 1.07995 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00087 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99693 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00106 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47078 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47041 * 120.00007 * 10 8 6 13 13 H 1.48502 * 109.47242 * 240.00339 * 10 8 6 14 14 C 1.47018 * 108.70425 * 24.13238 * 5 4 2 15 15 C 1.54321 * 107.26943 * 358.93574 * 14 5 4 16 16 H 1.09003 * 110.71899 * 96.35267 * 15 14 5 17 17 N 1.46503 * 110.72016 * 219.44599 * 15 14 5 18 18 C 1.34777 * 120.00178 * 273.54635 * 17 15 14 19 19 O 1.21574 * 119.99732 * 359.97438 * 18 17 15 20 20 C 1.47686 * 120.00264 * 180.02562 * 18 17 15 21 21 C 1.41562 * 126.44137 * 180.02562 * 20 18 17 22 22 C 1.35325 * 105.56112 * 180.02562 * 21 20 18 23 23 N 1.35907 * 107.11454 * 359.97438 * 22 21 20 24 24 C 1.39915 * 124.96454 * 179.97438 * 23 22 21 25 25 C 1.39326 * 120.85655 * 180.02562 * 24 23 22 26 26 C 1.38010 * 119.08208 * 180.02562 * 25 24 23 27 27 N 1.31934 * 120.83118 * 359.97438 * 26 25 24 28 28 C 1.31930 * 121.88705 * 0.02562 * 27 26 25 29 29 C 1.38018 * 120.83381 * 359.97438 * 28 27 26 30 30 N 1.28484 * 110.07151 * 0.26846 * 23 22 21 31 31 H 1.09003 * 109.47371 * 296.08996 * 1 2 3 32 32 H 1.09000 * 109.47502 * 56.09199 * 1 2 3 33 33 H 1.09001 * 109.47187 * 176.09161 * 1 2 3 34 34 H 1.09003 * 110.37014 * 86.07709 * 4 2 1 35 35 H 1.09000 * 110.46373 * 323.80419 * 4 2 1 36 36 H 0.96999 * 119.99722 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.88415 * 239.52075 * 14 5 4 38 38 H 1.08995 * 110.01480 * 118.42809 * 14 5 4 39 39 H 0.96999 * 119.99959 * 93.55327 * 17 15 14 40 40 H 1.08002 * 127.21674 * 0.03984 * 21 20 18 41 41 H 1.08000 * 126.44347 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.46116 * 0.04466 * 25 24 23 43 43 H 1.08004 * 119.58758 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.58052 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.46131 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4270 -1.2429 -0.7735 6 6 4.4639 -1.5665 -1.6074 7 1 4.3332 -1.5115 -2.6780 8 6 5.6831 -1.9653 -1.0767 9 7 5.8422 -2.0327 0.2281 10 14 7.0977 -2.4060 -2.2142 11 1 6.6650 -2.2486 -3.6261 12 1 8.2475 -1.5054 -1.9460 13 1 7.5051 -3.8138 -1.9750 14 6 3.4674 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4479 -1.6634 1.4237 17 7 2.2287 0.0493 2.3814 18 6 2.3023 -0.5008 3.6096 19 8 2.2499 -1.7085 3.7388 20 6 2.4454 0.3635 4.7986 21 6 2.5354 -0.0660 6.1444 22 6 2.6538 1.0644 6.8791 23 7 2.6352 2.1096 6.0106 24 6 2.7334 3.4568 6.3752 25 6 2.7044 4.4620 5.4109 26 6 2.8046 5.7789 5.8114 27 7 2.9260 6.0901 7.0877 28 6 2.9574 5.1674 8.0301 29 6 2.8628 3.8277 7.7119 30 7 2.5080 1.6801 4.8064 31 1 -0.3634 0.4520 0.9230 32 1 -0.3634 0.5733 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1559 -0.1718 -2.0837 35 1 1.4524 -1.6702 -1.4045 36 1 6.6940 -2.3117 0.5990 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2884 1.0420 39 1 2.2700 1.0130 2.2784 40 1 2.5144 -1.0825 6.5085 41 1 2.7457 1.1245 7.9535 42 1 2.6045 4.2141 4.3644 43 1 2.7834 6.5647 5.0707 44 1 3.0584 5.4641 9.0636 45 1 2.8888 3.0774 8.4882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080099708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:54 Heat of formation + Delta-G solvation = 95.379307 kcal Electronic energy + Delta-G solvation = -28755.692009 eV Core-core repulsion = 24775.208373 eV Total energy + Delta-G solvation = -3980.483636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.09190 -41.15651 -40.75944 -39.09594 -35.70349 -35.50678 -34.31836 -32.75817 -32.20051 -31.72406 -31.46162 -29.56257 -27.44427 -26.36610 -25.19318 -24.90250 -23.50928 -22.31788 -22.10463 -21.57048 -20.80347 -19.78037 -18.91324 -18.37983 -17.49809 -17.37424 -17.11884 -16.93657 -16.86020 -16.10913 -15.84326 -15.54302 -15.51593 -14.94986 -14.79559 -14.75166 -14.71168 -14.52695 -14.11891 -14.03717 -13.75963 -13.35460 -13.06429 -12.91094 -12.83945 -12.63470 -12.17226 -12.14239 -12.10487 -11.90225 -11.87281 -11.68046 -11.49344 -11.30524 -10.77749 -10.70120 -10.45436 -10.30281 -10.13886 -9.78610 -8.94515 -7.85807 -5.24207 -0.53007 0.01724 0.60967 1.10951 1.19184 1.43063 1.45214 1.55681 2.04242 2.27378 2.48138 2.73327 3.02338 3.32524 3.47476 3.51514 3.57755 3.67483 3.75794 3.83553 4.01470 4.02513 4.05818 4.07933 4.41489 4.44768 4.47287 4.57643 4.60299 4.65223 4.69860 4.77614 4.86953 4.90578 5.03826 5.06496 5.14836 5.18537 5.26397 5.43485 5.45963 5.47558 5.58076 5.74206 5.77693 6.14788 6.36040 6.68024 6.87360 7.03567 7.11580 7.73848 8.37929 9.23644 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002568 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.733911 B =10901.705587 C =11253.894765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.088 0.912 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.091 0.909 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.982 3.018 11 H -0.259 1.259 12 H -0.293 1.293 13 H -0.295 1.295 14 C 0.190 3.810 15 C 0.135 3.865 16 H 0.080 0.920 17 N -0.688 5.688 18 C 0.596 3.404 19 O -0.567 6.567 20 C -0.016 4.016 21 C -0.185 4.185 22 C 0.009 3.991 23 N -0.242 5.242 24 C 0.160 3.840 25 C -0.179 4.179 26 C 0.122 3.878 27 N -0.508 5.508 28 C 0.125 3.875 29 C -0.172 4.172 30 N -0.270 5.270 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.243 0.757 37 H 0.013 0.987 38 H -0.007 1.007 39 H 0.412 0.588 40 H 0.178 0.822 41 H 0.240 0.760 42 H 0.146 0.854 43 H 0.187 0.813 44 H 0.202 0.798 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 16.485 17.621 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.106 0.894 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.266 4.266 9 N -0.603 5.603 10 Si 0.810 3.190 11 H -0.183 1.183 12 H -0.220 1.220 13 H -0.222 1.222 14 C 0.063 3.937 15 C 0.029 3.971 16 H 0.098 0.902 17 N -0.339 5.339 18 C 0.382 3.618 19 O -0.444 6.444 20 C -0.178 4.178 21 C -0.212 4.212 22 C -0.130 4.130 23 N -0.024 5.024 24 C 0.061 3.939 25 C -0.201 4.201 26 C -0.034 4.034 27 N -0.218 5.218 28 C -0.032 4.032 29 C -0.194 4.194 30 N -0.104 5.104 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.012 0.988 39 H 0.249 0.751 40 H 0.195 0.805 41 H 0.256 0.744 42 H 0.163 0.837 43 H 0.204 0.796 44 H 0.219 0.781 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.086 17.418 17.212 26.880 hybrid contribution 1.262 -2.050 -0.489 2.457 sum -9.824 15.368 16.723 24.745 Atomic orbital electron populations 1.21652 0.91479 1.02533 1.02942 1.22541 0.97481 0.98772 0.92565 0.89354 1.21865 0.85194 0.95882 0.96224 1.44746 1.09633 1.79225 1.01878 1.19567 0.90043 1.37354 0.89856 0.89159 1.25776 1.00830 1.02478 0.97470 1.70263 1.24093 1.54723 1.11209 0.84951 0.78753 0.76744 0.78542 1.18326 1.21965 1.22227 1.21072 0.92366 0.96597 0.83629 1.22180 0.96835 0.93581 0.84476 0.90173 1.45645 1.72486 1.10873 1.04846 1.17229 0.75877 0.86363 0.82380 1.90784 1.52047 1.15205 1.86390 1.21997 1.10104 0.89965 0.95700 1.22157 1.07334 1.01422 0.90284 1.23747 1.05101 0.84224 0.99889 1.42901 1.49917 1.05903 1.03718 1.18332 1.00419 0.79341 0.95766 1.22154 1.03276 0.93434 1.01207 1.23097 0.92557 0.94418 0.93377 1.67782 1.12790 1.39214 1.01980 1.23334 0.92047 0.87092 1.00732 1.22298 1.03326 1.00248 0.93507 1.73461 1.19428 1.12421 1.05058 0.91716 0.90132 0.92590 0.92485 0.95214 0.94735 0.96904 0.98830 0.75104 0.80500 0.74412 0.83666 0.79597 0.78118 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.31 71.98 0.67 -2.48 16 2 C -0.09 -3.11 3.25 -9.41 -0.03 -3.15 16 3 H 0.09 2.78 8.00 -2.38 -0.02 2.76 16 4 C 0.13 5.41 6.70 86.86 0.58 5.99 16 5 N -0.63 -33.71 3.39 -692.00 -2.35 -36.06 16 6 C -0.24 -13.86 10.28 84.03 0.86 -12.99 16 7 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 8 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 9 N -0.95 -61.38 10.31 21.65 0.22 -61.16 16 10 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 14 C 0.19 10.28 5.12 86.73 0.44 10.73 16 15 C 0.13 5.51 2.70 46.18 0.12 5.64 16 16 H 0.08 3.44 7.59 -2.39 -0.02 3.42 16 17 N -0.69 -25.12 5.13 -439.93 -2.26 -27.38 16 18 C 0.60 23.16 7.82 86.74 0.68 23.84 16 19 O -0.57 -26.23 16.65 -3.95 -0.07 -26.29 16 20 C -0.02 -0.51 7.13 42.47 0.30 -0.21 16 21 C -0.18 -4.55 10.80 22.42 0.24 -4.31 16 22 C 0.01 0.15 10.82 83.39 0.90 1.05 16 23 N -0.24 -5.14 3.51 -186.73 -0.66 -5.79 16 24 C 0.16 2.70 6.70 38.37 0.26 2.95 16 25 C -0.18 -3.03 9.67 22.48 0.22 -2.81 16 26 C 0.12 1.70 11.17 84.62 0.95 2.65 16 27 N -0.51 -7.37 10.36 -196.06 -2.03 -9.40 16 28 C 0.12 1.17 11.17 84.63 0.95 2.11 16 29 C -0.17 -1.64 9.50 22.48 0.21 -1.43 16 30 N -0.27 -7.50 10.94 -48.16 -0.53 -8.03 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.03 1.18 7.99 -2.39 -0.02 1.17 16 36 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.01 0.78 7.27 -2.39 -0.02 0.76 16 38 H -0.01 -0.42 7.50 -2.39 -0.02 -0.44 16 39 H 0.41 13.05 8.24 -92.71 -0.76 12.29 16 40 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.24 1.21 7.04 -2.91 -0.02 1.19 16 42 H 0.15 2.63 7.74 -2.91 -0.02 2.61 16 43 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 45 H 0.18 0.37 6.78 -2.91 -0.02 0.35 16 Total: -1.00 -85.24 379.77 2.45 -82.78 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.26 Total: 18.00 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 7.82 Total: 23.69 kcal Atomic # 7 Polarization: -140.22 SS G_CDS: -7.59 Total: -147.81 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.29 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -85.24 2.45 -82.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080099708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.164 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds