Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.91307 * 2 1 4 4 C 1.55119 * 111.16305 * 236.07163 * 2 1 3 5 5 N 1.47429 * 104.94268 * 205.12862 * 4 2 1 6 6 C 1.36932 * 125.64636 * 204.03367 * 5 4 2 7 7 H 1.08001 * 120.00319 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99959 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99983 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46948 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47056 * 119.99647 * 10 8 6 13 13 H 1.48492 * 109.47028 * 240.00145 * 10 8 6 14 14 C 1.47021 * 108.70005 * 24.00486 * 5 4 2 15 15 C 1.54313 * 107.27329 * 358.93963 * 14 5 4 16 16 H 1.09003 * 110.72153 * 96.34881 * 15 14 5 17 17 N 1.46505 * 110.72183 * 219.44596 * 15 14 5 18 18 C 1.34784 * 119.99669 * 271.16262 * 17 15 14 19 19 O 1.21545 * 120.00074 * 359.97438 * 18 17 15 20 20 C 1.47864 * 119.99717 * 180.02562 * 18 17 15 21 21 C 1.39657 * 120.08625 * 359.96774 * 20 18 17 22 22 C 1.38019 * 120.09499 * 180.02562 * 21 20 18 23 23 C 1.38163 * 120.27052 * 359.72435 * 22 21 20 24 24 C 1.39409 * 120.17305 * 0.55475 * 23 22 21 25 25 C 1.48421 * 120.04835 * 179.71578 * 24 23 22 26 26 N 1.33967 * 125.65355 * 359.73373 * 25 24 23 27 27 C 1.30684 * 109.78232 * 179.97438 * 26 25 24 28 28 N 1.34514 * 108.29312 * 359.97438 * 27 26 25 29 29 H 0.96993 * 126.74433 * 180.02562 * 28 27 26 30 30 N 1.31495 * 125.64577 * 179.69845 * 25 24 23 31 31 C 1.39097 * 119.90170 * 359.44949 * 24 23 22 32 32 H 1.09007 * 109.46777 * 296.09723 * 1 2 3 33 33 H 1.08993 * 109.47169 * 56.09872 * 1 2 3 34 34 H 1.09001 * 109.47010 * 176.09891 * 1 2 3 35 35 H 1.08997 * 110.41804 * 86.20025 * 4 2 1 36 36 H 1.08998 * 110.30305 * 323.99765 * 4 2 1 37 37 H 0.96999 * 120.00222 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.88149 * 239.51918 * 14 5 4 39 39 H 1.09005 * 110.00795 * 118.42946 * 14 5 4 40 40 H 0.97000 * 120.00251 * 91.15069 * 17 15 14 41 41 H 1.08003 * 119.95004 * 0.02562 * 21 20 18 42 42 H 1.07996 * 119.86266 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.91168 * 180.29720 * 23 22 21 44 44 H 1.08002 * 125.85213 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.13521 * 180.30008 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4679 -1.5728 -1.6022 7 1 4.3396 -1.5175 -2.6731 8 6 5.6852 -1.9737 -1.0688 9 7 5.8418 -2.0406 0.2363 10 14 7.1014 -2.4171 -2.2033 11 1 6.6717 -2.2600 -3.6161 12 1 8.2524 -1.5185 -1.9327 13 1 7.5058 -3.8255 -1.9632 14 6 3.4672 -1.2780 0.6989 15 6 2.0862 -0.8079 1.2022 16 1 1.4452 -1.6614 1.4229 17 7 2.2287 0.0497 2.3815 18 6 2.2499 -0.4967 3.6134 19 8 2.1505 -1.7009 3.7460 20 6 2.3931 0.3688 4.8036 21 6 2.5071 1.7526 4.6534 22 6 2.6413 2.5606 5.7642 23 6 2.6580 2.0072 7.0301 24 6 2.5508 0.6268 7.1928 25 6 2.5754 0.0348 8.5536 26 7 2.7004 0.7169 9.6998 27 6 2.6839 -0.1107 10.7111 28 7 2.5455 -1.3600 10.2320 29 1 2.5015 -2.1787 10.7503 30 7 2.4774 -1.2462 8.8338 31 6 2.4153 -0.1943 6.0783 32 1 -0.3633 0.4521 0.9230 33 1 -0.3633 0.5732 -0.8529 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1642 -0.1733 -2.0837 36 1 1.4554 -1.6695 -1.4053 37 1 6.6922 -2.3211 0.6091 38 1 4.2434 -0.6056 1.0642 39 1 3.6625 -2.2927 1.0460 40 1 2.3078 1.0106 2.2757 41 1 2.4902 2.1910 3.6665 42 1 2.7296 3.6302 5.6437 43 1 2.7584 2.6454 7.8956 44 1 2.7670 0.1617 11.7528 45 1 2.3272 -1.2637 6.2002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080248910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 107.063588 kcal Electronic energy + Delta-G solvation = -28549.671842 eV Core-core repulsion = 24569.694875 eV Total energy + Delta-G solvation = -3979.976968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35510 -40.04974 -38.54074 -37.25736 -34.02310 -33.44103 -32.60905 -32.10499 -31.15925 -30.34140 -30.11564 -27.71620 -25.61757 -24.36942 -24.15338 -23.30487 -22.31580 -21.25777 -20.36071 -19.98661 -19.43953 -18.69676 -17.48025 -16.84055 -16.21034 -15.87016 -15.77704 -15.48490 -15.14496 -14.89097 -14.37068 -14.23772 -13.85417 -13.72786 -13.66368 -13.09596 -12.78677 -12.76181 -12.63570 -12.46819 -11.95757 -11.85021 -11.65710 -11.41020 -11.30609 -10.99479 -10.78189 -10.76664 -10.57953 -10.41383 -10.34514 -10.28574 -9.94371 -9.88618 -9.68889 -9.53651 -9.06713 -8.77214 -8.58557 -8.41864 -6.79465 -5.65101 -3.00540 0.57968 1.00448 1.49044 2.30526 2.57432 3.22389 3.40711 3.43566 3.48246 3.51261 3.70880 3.95644 4.26856 4.53269 4.56053 4.75899 4.82609 4.96685 5.09099 5.16751 5.34088 5.37067 5.47417 5.52976 5.58886 5.76540 5.79119 5.84583 5.92740 6.01659 6.01857 6.18082 6.20375 6.22453 6.27497 6.31131 6.39106 6.52499 6.65055 6.66440 6.69408 6.80748 6.96888 7.60998 7.63037 7.69333 7.89106 7.94112 8.29733 8.59538 9.25590 9.86376 10.51331 11.45415 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002500 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.612140 B =11198.331051 C =12233.465548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.089 0.911 17 N -0.706 5.706 18 C 0.556 3.444 19 O -0.531 6.531 20 C -0.128 4.128 21 C -0.069 4.069 22 C -0.131 4.131 23 C -0.056 4.056 24 C -0.030 4.030 25 C 0.273 3.727 26 N -0.536 5.536 27 C 0.263 3.737 28 N -0.484 5.484 29 H 0.444 0.556 30 N -0.298 5.298 31 C -0.025 4.025 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.022 0.978 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.395 0.605 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.225 0.775 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 10.071 19.527 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.357 5.357 18 C 0.342 3.658 19 O -0.409 6.409 20 C -0.131 4.131 21 C -0.089 4.089 22 C -0.149 4.149 23 C -0.076 4.076 24 C -0.033 4.033 25 C -0.007 4.007 26 N -0.264 5.264 27 C -0.036 4.036 28 N -0.202 5.202 29 H 0.289 0.711 30 N -0.127 5.127 31 C -0.046 4.046 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.229 0.771 41 H 0.149 0.851 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.241 0.759 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.191 8.921 19.110 23.423 hybrid contribution 0.987 -0.322 0.184 1.054 sum -9.204 8.599 19.294 23.042 Atomic orbital electron populations 1.21697 0.94996 1.01833 1.00980 1.22650 0.94831 0.99490 0.96414 0.90468 1.21616 0.87659 0.95005 0.94262 1.44414 1.07991 1.79068 1.01809 1.19084 0.89318 1.38440 0.88955 0.90283 1.24839 0.97906 1.01755 0.95995 1.69986 1.24204 1.53182 1.09088 0.86053 0.82436 0.77775 0.79538 1.20518 1.21814 1.21773 1.21475 0.90029 1.00469 0.83313 1.22528 1.00388 0.92759 0.82746 0.89313 1.45830 1.73740 1.10482 1.05618 1.18100 0.76990 0.87661 0.83020 1.90789 1.49358 1.14488 1.86227 1.19963 1.05584 0.93729 0.93813 1.21506 0.95386 0.92456 0.99520 1.21034 1.01823 1.00351 0.91694 1.21345 0.94763 0.93395 0.98081 1.17317 1.06038 0.93134 0.86794 1.22270 0.97933 0.87087 0.93398 1.70492 1.24595 1.34258 0.97062 1.26093 0.95842 0.81041 1.00637 1.48146 1.56449 1.10069 1.05536 0.71053 1.78365 1.25849 1.18623 0.89828 1.21303 0.92489 1.00995 0.89818 0.93061 0.92779 0.92568 0.93991 0.96055 0.93782 0.93109 0.93373 0.77053 0.85097 0.84713 0.84385 0.75880 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.32 37.16 0.35 -1.49 16 2 C -0.11 -1.90 3.27 -88.36 -0.29 -2.19 16 3 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 4 C 0.14 2.89 6.72 -2.41 -0.02 2.87 16 5 N -0.61 -15.72 3.40 -169.94 -0.58 -16.29 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 10 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 C 0.17 4.37 5.13 -3.07 -0.02 4.35 16 15 C 0.12 2.35 2.74 -66.10 -0.18 2.16 16 16 H 0.09 1.84 7.52 -51.93 -0.39 1.45 16 17 N -0.71 -11.71 5.07 -52.97 -0.27 -11.98 16 18 C 0.56 9.99 7.77 -12.32 -0.10 9.90 16 19 O -0.53 -11.73 16.03 5.33 0.09 -11.65 16 20 C -0.13 -1.87 5.87 -105.01 -0.62 -2.48 16 21 C -0.07 -0.77 9.54 -39.13 -0.37 -1.15 16 22 C -0.13 -1.26 10.02 -39.69 -0.40 -1.65 16 23 C -0.06 -0.60 9.68 -39.17 -0.38 -0.98 16 24 C -0.03 -0.39 5.87 -104.95 -0.62 -1.01 16 25 C 0.27 3.54 7.77 -156.63 -1.22 2.32 16 26 N -0.54 -5.83 10.81 -12.38 -0.13 -5.97 16 27 C 0.26 1.76 13.11 -90.70 -1.19 0.57 16 28 N -0.48 -3.69 7.44 29.52 0.22 -3.47 16 29 H 0.44 1.63 8.96 -182.34 -1.63 0.00 16 30 N -0.30 -3.81 12.42 32.10 0.40 -3.41 16 31 C -0.03 -0.37 9.22 -38.84 -0.36 -0.73 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.05 1.41 7.27 -51.93 -0.38 1.03 16 39 H 0.05 1.42 7.51 -51.93 -0.39 1.03 16 40 H 0.39 5.24 6.56 -40.82 -0.27 4.97 16 41 H 0.13 1.17 6.39 -52.48 -0.34 0.83 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.14 1.28 7.82 -52.48 -0.41 0.87 16 44 H 0.23 0.22 8.06 -52.49 -0.42 -0.20 16 45 H 0.14 2.35 7.42 -52.49 -0.39 1.97 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -38.29 378.34 -11.78 -50.07 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.10 Total: 3.29 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -5.65 Total: 3.50 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: 0.21 Total: -68.46 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.29 -11.78 -50.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080248910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.129 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds