Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.91307 * 2 1 4 4 C 1.55119 * 111.16305 * 236.07163 * 2 1 3 5 5 N 1.47429 * 104.94268 * 205.12862 * 4 2 1 6 6 C 1.36932 * 125.64636 * 204.03367 * 5 4 2 7 7 H 1.08001 * 120.00319 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99959 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99983 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46948 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47056 * 119.99647 * 10 8 6 13 13 H 1.48492 * 109.47028 * 240.00145 * 10 8 6 14 14 C 1.47021 * 108.70005 * 24.00486 * 5 4 2 15 15 C 1.54313 * 107.27329 * 358.93963 * 14 5 4 16 16 H 1.09003 * 110.72153 * 96.34881 * 15 14 5 17 17 N 1.46505 * 110.72183 * 219.44596 * 15 14 5 18 18 C 1.34784 * 119.99669 * 271.16262 * 17 15 14 19 19 O 1.21545 * 120.00074 * 359.97438 * 18 17 15 20 20 C 1.47864 * 119.99717 * 180.02562 * 18 17 15 21 21 C 1.39657 * 120.08625 * 359.96774 * 20 18 17 22 22 C 1.38019 * 120.09499 * 180.02562 * 21 20 18 23 23 C 1.38163 * 120.27052 * 359.72435 * 22 21 20 24 24 C 1.39409 * 120.17305 * 0.55475 * 23 22 21 25 25 C 1.48421 * 120.04835 * 179.71578 * 24 23 22 26 26 N 1.33967 * 125.65355 * 359.73373 * 25 24 23 27 27 C 1.30684 * 109.78232 * 179.97438 * 26 25 24 28 28 N 1.34514 * 108.29312 * 359.97438 * 27 26 25 29 29 H 0.96993 * 126.74433 * 180.02562 * 28 27 26 30 30 N 1.31495 * 125.64577 * 179.69845 * 25 24 23 31 31 C 1.39097 * 119.90170 * 359.44949 * 24 23 22 32 32 H 1.09007 * 109.46777 * 296.09723 * 1 2 3 33 33 H 1.08993 * 109.47169 * 56.09872 * 1 2 3 34 34 H 1.09001 * 109.47010 * 176.09891 * 1 2 3 35 35 H 1.08997 * 110.41804 * 86.20025 * 4 2 1 36 36 H 1.08998 * 110.30305 * 323.99765 * 4 2 1 37 37 H 0.96999 * 120.00222 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.88149 * 239.51918 * 14 5 4 39 39 H 1.09005 * 110.00795 * 118.42946 * 14 5 4 40 40 H 0.97000 * 120.00251 * 91.15069 * 17 15 14 41 41 H 1.08003 * 119.95004 * 0.02562 * 21 20 18 42 42 H 1.07996 * 119.86266 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.91168 * 180.29720 * 23 22 21 44 44 H 1.08002 * 125.85213 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.13521 * 180.30008 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4679 -1.5728 -1.6022 7 1 4.3396 -1.5175 -2.6731 8 6 5.6852 -1.9737 -1.0688 9 7 5.8418 -2.0406 0.2363 10 14 7.1014 -2.4171 -2.2033 11 1 6.6717 -2.2600 -3.6161 12 1 8.2524 -1.5185 -1.9327 13 1 7.5058 -3.8255 -1.9632 14 6 3.4672 -1.2780 0.6989 15 6 2.0862 -0.8079 1.2022 16 1 1.4452 -1.6614 1.4229 17 7 2.2287 0.0497 2.3815 18 6 2.2499 -0.4967 3.6134 19 8 2.1505 -1.7009 3.7460 20 6 2.3931 0.3688 4.8036 21 6 2.5071 1.7526 4.6534 22 6 2.6413 2.5606 5.7642 23 6 2.6580 2.0072 7.0301 24 6 2.5508 0.6268 7.1928 25 6 2.5754 0.0348 8.5536 26 7 2.7004 0.7169 9.6998 27 6 2.6839 -0.1107 10.7111 28 7 2.5455 -1.3600 10.2320 29 1 2.5015 -2.1787 10.7503 30 7 2.4774 -1.2462 8.8338 31 6 2.4153 -0.1943 6.0783 32 1 -0.3633 0.4521 0.9230 33 1 -0.3633 0.5732 -0.8529 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1642 -0.1733 -2.0837 36 1 1.4554 -1.6695 -1.4053 37 1 6.6922 -2.3211 0.6091 38 1 4.2434 -0.6056 1.0642 39 1 3.6625 -2.2927 1.0460 40 1 2.3078 1.0106 2.2757 41 1 2.4902 2.1910 3.6665 42 1 2.7296 3.6302 5.6437 43 1 2.7584 2.6454 7.8956 44 1 2.7670 0.1617 11.7528 45 1 2.3272 -1.2637 6.2002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080248910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 80.385394 kcal Electronic energy + Delta-G solvation = -28550.828696 eV Core-core repulsion = 24569.694875 eV Total energy + Delta-G solvation = -3981.133821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.07683 -41.36518 -39.81970 -38.80576 -35.71937 -34.58945 -34.01196 -32.90825 -32.28131 -32.08420 -30.99163 -29.45510 -27.38672 -25.80456 -25.03592 -24.62184 -23.22549 -22.35340 -21.86326 -21.56162 -20.70850 -19.47552 -18.89825 -18.51384 -17.57786 -17.03963 -16.89106 -16.52600 -16.31330 -16.21064 -15.89710 -15.55158 -15.22875 -15.07604 -14.72897 -14.59898 -14.29575 -14.06917 -13.88693 -13.60992 -13.33427 -13.19548 -13.03754 -12.90266 -12.77840 -12.61629 -12.35425 -12.14668 -12.04801 -11.86213 -11.64759 -11.54253 -11.45949 -11.19816 -11.06517 -11.02814 -10.76740 -10.17721 -9.92424 -9.64631 -8.93343 -7.84937 -5.23226 -0.33937 -0.01356 0.81489 1.43565 1.45815 1.56216 1.67276 1.73159 2.03388 2.12843 2.48873 2.90108 2.96357 3.33360 3.48378 3.59315 3.70304 3.79612 3.91602 4.00073 4.05724 4.10955 4.18700 4.23796 4.45313 4.50815 4.60601 4.68477 4.73380 4.89336 4.89607 5.06066 5.07591 5.08959 5.11394 5.19313 5.27676 5.29524 5.37666 5.42268 5.45094 5.50818 5.61208 5.77012 5.80966 6.15861 6.21785 6.54856 6.97615 7.05352 7.21991 7.75174 8.39123 9.24291 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002500 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.612140 B =11198.331051 C =12233.465548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 H 0.097 0.903 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.238 4.238 7 H 0.091 0.909 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.291 1.291 13 H -0.298 1.298 14 C 0.188 3.812 15 C 0.135 3.865 16 H 0.072 0.928 17 N -0.692 5.692 18 C 0.552 3.448 19 O -0.586 6.586 20 C -0.148 4.148 21 C -0.061 4.061 22 C -0.114 4.114 23 C -0.045 4.045 24 C -0.041 4.041 25 C 0.255 3.745 26 N -0.562 5.562 27 C 0.283 3.717 28 N -0.475 5.475 29 H 0.459 0.541 30 N -0.348 5.348 31 C -0.045 4.045 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.243 0.757 38 H 0.019 0.981 39 H -0.014 1.014 40 H 0.414 0.586 41 H 0.159 0.841 42 H 0.180 0.820 43 H 0.159 0.841 44 H 0.283 0.717 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 13.792 19.995 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.115 0.885 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.108 0.892 8 C -0.266 4.266 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.183 1.183 12 H -0.218 1.218 13 H -0.225 1.225 14 C 0.062 3.938 15 C 0.029 3.971 16 H 0.090 0.910 17 N -0.343 5.343 18 C 0.341 3.659 19 O -0.468 6.468 20 C -0.151 4.151 21 C -0.081 4.081 22 C -0.131 4.131 23 C -0.065 4.065 24 C -0.044 4.044 25 C -0.025 4.025 26 N -0.291 5.291 27 C -0.014 4.014 28 N -0.195 5.195 29 H 0.308 0.692 30 N -0.178 5.178 31 C -0.067 4.067 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.005 0.995 40 H 0.253 0.747 41 H 0.176 0.824 42 H 0.197 0.803 43 H 0.176 0.824 44 H 0.298 0.702 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.280 12.680 19.564 25.900 hybrid contribution 1.295 -1.504 0.167 1.992 sum -9.986 11.175 19.731 24.778 Atomic orbital electron populations 1.21660 0.91632 1.02235 1.03169 1.22585 0.97304 0.99049 0.92221 0.88457 1.21905 0.85133 0.95805 0.96477 1.44738 1.09712 1.79080 1.01890 1.19563 0.90027 1.37256 0.89886 0.89164 1.25767 1.00854 1.02514 0.97420 1.70262 1.24184 1.54715 1.11125 0.84962 0.78864 0.76653 0.78576 1.18290 1.21785 1.22530 1.21089 0.92675 0.96431 0.83620 1.22104 0.96543 0.93665 0.84831 0.91032 1.45602 1.73142 1.11141 1.04426 1.18741 0.75554 0.87435 0.84213 1.90755 1.51856 1.17102 1.87042 1.19727 1.08523 0.94983 0.91881 1.21800 0.94007 0.90618 1.01647 1.21504 0.99159 1.02201 0.90243 1.21671 0.93015 0.92297 0.99542 1.17504 1.06178 0.94182 0.86546 1.22358 0.98667 0.87416 0.94063 1.70466 1.26217 1.35324 0.97088 1.27191 0.92441 0.79793 1.02015 1.48076 1.55904 1.11509 1.03970 0.69160 1.78268 1.27306 1.19352 0.92859 1.21111 0.94610 0.99893 0.91047 0.91285 0.90038 0.93254 0.92299 0.95815 0.94782 0.96305 0.99544 0.74727 0.82360 0.80258 0.82364 0.70206 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.32 71.98 0.67 -2.37 16 2 C -0.09 -2.90 3.27 -9.33 -0.03 -2.93 16 3 H 0.10 2.74 8.00 -2.39 -0.02 2.72 16 4 C 0.13 5.27 6.72 86.93 0.58 5.85 16 5 N -0.63 -33.37 3.40 -691.58 -2.35 -35.72 16 6 C -0.24 -13.73 10.28 84.03 0.86 -12.86 16 7 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 8 C -0.07 -4.35 5.49 84.86 0.47 -3.88 16 9 N -0.95 -61.33 10.31 21.65 0.22 -61.11 16 10 Si 0.98 47.55 29.55 68.60 2.03 49.57 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 13 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 14 C 0.19 10.11 5.13 86.73 0.44 10.55 16 15 C 0.13 5.39 2.74 46.18 0.13 5.52 16 16 H 0.07 3.14 7.52 -2.39 -0.02 3.12 16 17 N -0.69 -23.27 5.07 -439.76 -2.23 -25.49 16 18 C 0.55 21.05 7.77 86.79 0.67 21.72 16 19 O -0.59 -28.45 16.03 -3.86 -0.06 -28.52 16 20 C -0.15 -4.48 5.87 -20.11 -0.12 -4.60 16 21 C -0.06 -1.25 9.54 22.56 0.22 -1.03 16 22 C -0.11 -1.78 10.02 22.20 0.22 -1.55 16 23 C -0.05 -0.88 9.68 22.53 0.22 -0.66 16 24 C -0.04 -1.11 5.87 -20.08 -0.12 -1.23 16 25 C 0.25 6.74 7.77 137.48 1.07 7.81 16 26 N -0.56 -11.49 10.81 -193.08 -2.09 -13.58 16 27 C 0.28 3.15 13.11 180.38 2.37 5.51 16 28 N -0.47 -6.92 7.44 -60.52 -0.45 -7.37 16 29 H 0.46 2.99 8.96 -213.11 -1.91 1.08 16 30 N -0.35 -9.36 12.42 -52.35 -0.65 -10.01 16 31 C -0.05 -1.45 9.22 22.75 0.21 -1.24 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.02 0.96 7.99 -2.39 -0.02 0.94 16 37 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.02 1.11 7.27 -2.39 -0.02 1.09 16 39 H -0.01 -0.89 7.51 -2.38 -0.02 -0.91 16 40 H 0.41 10.36 6.56 -92.71 -0.61 9.75 16 41 H 0.16 2.26 6.39 -2.91 -0.02 2.24 16 42 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.16 2.45 7.82 -2.91 -0.02 2.42 16 44 H 0.28 -0.71 8.06 -2.91 -0.02 -0.73 16 45 H 0.11 4.22 7.42 -2.91 -0.02 4.20 16 Total: -1.00 -93.58 378.34 0.82 -92.77 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -1.47 Total: 14.83 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 7.86 Total: 24.62 kcal Atomic # 7 Polarization: -145.73 SS G_CDS: -7.54 Total: -153.27 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.06 Total: -28.52 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -93.58 0.82 -92.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080248910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.154 kcal (2) G-P(sol) polarization free energy of solvation -93.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds