Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08001 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46743 * 59.99931 * 10 8 6 12 12 H 1.48495 * 109.47245 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46854 * 300.00070 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 N 1.46502 * 110.72235 * 219.26811 * 15 14 5 18 18 C 1.34774 * 119.99871 * 271.16020 * 17 15 14 19 19 O 1.21604 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.47423 * 120.00029 * 180.02562 * 18 17 15 21 21 C 1.41366 * 126.40735 * 0.02562 * 20 18 17 22 22 N 1.30447 * 108.07839 * 179.97438 * 21 20 18 23 23 N 1.39934 * 108.91451 * 359.97438 * 22 21 20 24 24 C 1.39915 * 125.77595 * 180.02562 * 23 22 21 25 25 C 1.39324 * 120.85727 * 179.69696 * 24 23 22 26 26 C 1.38004 * 119.08206 * 179.80013 * 25 24 23 27 27 N 1.31939 * 120.83246 * 0.47826 * 26 25 24 28 28 C 1.31944 * 121.88150 * 359.74901 * 27 26 25 29 29 C 1.37997 * 120.83586 * 0.02562 * 28 27 26 30 30 C 1.34605 * 108.45185 * 359.75329 * 23 22 21 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 36 36 H 0.96994 * 120.00360 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 0.96999 * 120.00288 * 91.15371 * 17 15 14 40 40 H 1.08004 * 125.95999 * 359.95800 * 21 20 18 41 41 H 1.08007 * 120.45964 * 0.02562 * 25 24 23 42 42 H 1.07999 * 119.58779 * 180.20752 * 26 25 24 43 43 H 1.08003 * 119.58068 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.46087 * 179.97438 * 29 28 27 45 45 H 1.07992 * 126.31622 * 180.26477 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6780 8 6 5.6837 -1.9634 -1.0765 9 7 5.8428 -2.0313 0.2282 10 14 7.0989 -2.4025 -2.2140 11 1 7.4402 -1.2276 -3.0556 12 1 8.2814 -2.7928 -1.4051 13 1 6.6998 -3.5366 -3.0857 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2285 0.0461 2.3839 18 6 2.2520 -0.5041 3.6140 19 8 2.1546 -1.7094 3.7430 20 6 2.3946 0.3553 4.8033 21 6 2.5159 1.7638 4.8110 22 7 2.6206 2.1543 6.0513 23 7 2.5717 1.0321 6.8858 24 6 2.6526 1.0473 8.2826 25 6 2.5862 -0.1359 9.0151 26 6 2.6740 -0.0787 10.3912 27 7 2.8094 1.0772 11.0127 28 6 2.8714 2.2191 10.3547 29 6 2.7956 2.2467 8.9770 30 6 2.4276 -0.0640 6.1179 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.6949 -2.3090 0.5992 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.3059 1.0075 2.2811 40 1 2.5212 2.4047 3.9417 41 1 2.4714 -1.0852 8.5128 42 1 2.6269 -0.9913 10.9669 43 1 2.9821 3.1441 10.9012 44 1 2.8467 3.1849 8.4446 45 1 2.3542 -1.0836 6.4660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080681888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 114.114700 kcal Electronic energy + Delta-G solvation = -28458.979009 eV Core-core repulsion = 24479.307801 eV Total energy + Delta-G solvation = -3979.671209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07669 -40.33830 -39.21710 -37.39300 -34.79138 -33.87294 -32.61432 -31.96408 -30.76910 -30.40154 -30.34161 -27.76817 -25.65924 -24.88975 -24.28352 -23.61850 -22.35472 -21.41222 -20.45135 -19.95810 -19.66407 -18.77949 -16.97636 -16.78517 -16.49971 -16.24634 -15.92973 -15.79754 -15.32576 -14.94681 -14.60045 -14.37072 -14.23802 -14.06642 -13.91536 -13.66532 -13.13920 -13.12729 -12.76699 -12.67202 -12.29317 -11.97190 -11.69266 -11.39986 -11.33562 -11.30571 -11.00981 -10.75690 -10.60418 -10.41391 -10.10047 -9.97472 -9.93619 -9.74388 -9.70874 -9.65651 -9.58989 -8.85133 -8.60139 -8.42898 -6.82093 -5.67617 -3.02907 0.20558 0.58781 1.62838 1.75757 1.96951 3.32985 3.41571 3.44337 3.46786 3.47899 3.61805 3.92898 3.96653 4.20084 4.42757 4.47328 4.51750 4.63996 4.84439 4.97515 5.02931 5.08200 5.22670 5.27824 5.31843 5.43213 5.49193 5.54911 5.56460 5.76865 5.97752 5.99611 6.01619 6.07074 6.15777 6.21473 6.35992 6.49861 6.53497 6.63408 6.77876 6.94223 7.10241 7.45952 7.58044 7.60072 7.86354 7.92100 8.27448 8.57821 9.23259 9.84005 10.48857 11.42839 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002332 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.709895 B =12001.629961 C =13085.102929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.705 5.705 18 C 0.591 3.409 19 O -0.542 6.542 20 C -0.262 4.262 21 C 0.098 3.902 22 N -0.289 5.289 23 N -0.322 5.322 24 C 0.207 3.793 25 C -0.196 4.196 26 C 0.129 3.871 27 N -0.494 5.494 28 C 0.124 3.876 29 C -0.173 4.173 30 C 0.125 3.875 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.394 0.606 40 H 0.200 0.800 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 9.506 16.779 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.047 3.953 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.354 5.354 18 C 0.377 3.623 19 O -0.420 6.420 20 C -0.276 4.276 21 C -0.091 4.091 22 N -0.106 5.106 23 N -0.096 5.096 24 C 0.106 3.894 25 C -0.219 4.219 26 C -0.028 4.028 27 N -0.204 5.204 28 C -0.033 4.033 29 C -0.195 4.195 30 C -0.020 4.020 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.228 0.772 40 H 0.217 0.783 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.183 0.817 44 H 0.169 0.831 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.119 9.558 18.623 23.250 hybrid contribution 0.829 -0.467 -2.224 2.419 sum -9.290 9.091 16.400 20.926 Atomic orbital electron populations 1.21701 0.95039 1.01812 1.00970 1.22612 0.94810 0.99527 0.96388 0.90424 1.21589 0.87649 0.95028 0.94312 1.44400 1.07827 1.79238 1.01808 1.18995 0.89297 1.38712 0.88892 0.90396 1.24826 0.97878 1.01717 0.95995 1.69958 1.24236 1.53195 1.09189 0.86207 0.81881 0.78255 0.79444 1.21203 1.21651 1.21153 1.21475 0.90043 1.00450 0.83293 1.22503 1.00361 0.92759 0.82636 0.89315 1.45663 1.73965 1.10350 1.05450 1.17039 0.76405 0.86799 0.82047 1.90797 1.50569 1.14275 1.86344 1.20540 1.19345 0.93859 0.93838 1.24347 0.95271 0.94127 0.95383 1.77237 1.24916 1.07159 1.01268 1.45555 1.54455 1.05483 1.04067 1.17830 0.97193 0.95476 0.78903 1.21983 1.06151 0.97637 0.96088 1.22697 0.93023 0.96591 0.90502 1.67728 1.12915 0.98566 1.41157 1.22765 0.93332 0.96793 0.90414 1.21964 1.03667 0.98096 0.95771 1.23066 0.95374 0.93450 0.90113 0.93086 0.92801 0.92582 0.94008 0.96032 0.93704 0.93145 0.93413 0.77199 0.78343 0.83603 0.81513 0.81683 0.83148 0.78897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.11 -1.82 3.26 -88.47 -0.29 -2.11 16 3 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 4 C 0.14 2.81 6.70 -2.53 -0.02 2.79 16 5 N -0.61 -15.38 3.39 -170.07 -0.58 -15.95 16 6 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.46 10.31 55.49 0.57 -26.89 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.17 4.24 5.12 -3.07 -0.02 4.23 16 15 C 0.12 2.27 2.74 -66.10 -0.18 2.09 16 16 H 0.09 1.76 7.52 -51.93 -0.39 1.37 16 17 N -0.71 -10.90 5.11 -53.10 -0.27 -11.17 16 18 C 0.59 9.75 7.81 -12.52 -0.10 9.65 16 19 O -0.54 -11.03 16.58 5.27 0.09 -10.95 16 20 C -0.26 -3.46 6.13 -105.05 -0.64 -4.11 16 21 C 0.10 1.09 11.50 -16.95 -0.19 0.90 16 22 N -0.29 -3.45 11.87 30.88 0.37 -3.09 16 23 N -0.32 -3.68 3.76 -10.03 -0.04 -3.72 16 24 C 0.21 2.03 6.73 -83.36 -0.56 1.47 16 25 C -0.20 -1.54 9.52 -39.26 -0.37 -1.91 16 26 C 0.13 0.95 11.17 -17.59 -0.20 0.75 16 27 N -0.49 -4.36 10.36 -13.32 -0.14 -4.50 16 28 C 0.12 0.94 11.17 -17.59 -0.20 0.75 16 29 C -0.17 -1.50 9.73 -39.26 -0.38 -1.88 16 30 C 0.13 1.48 10.64 -16.41 -0.17 1.31 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.32 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.43 7.99 -51.92 -0.41 0.02 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 37 H 0.05 1.36 7.27 -51.93 -0.38 0.98 16 38 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 39 H 0.39 4.81 7.50 -40.82 -0.31 4.51 16 40 H 0.20 1.51 7.50 -52.48 -0.39 1.12 16 41 H 0.15 0.87 6.85 -52.48 -0.36 0.51 16 42 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.15 1.23 7.78 -52.49 -0.41 0.82 16 45 H 0.19 1.86 7.09 -52.49 -0.37 1.49 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -35.92 379.34 -8.44 -44.36 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.91 Total: 3.33 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.23 Total: 5.61 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.09 Total: -65.32 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.92 -8.44 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080681888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.475 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds