Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08001 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46743 * 59.99931 * 10 8 6 12 12 H 1.48495 * 109.47245 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46854 * 300.00070 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 N 1.46502 * 110.72235 * 219.26811 * 15 14 5 18 18 C 1.34774 * 119.99871 * 271.16020 * 17 15 14 19 19 O 1.21604 * 120.00134 * 359.97438 * 18 17 15 20 20 C 1.47423 * 120.00029 * 180.02562 * 18 17 15 21 21 C 1.41366 * 126.40735 * 0.02562 * 20 18 17 22 22 N 1.30447 * 108.07839 * 179.97438 * 21 20 18 23 23 N 1.39934 * 108.91451 * 359.97438 * 22 21 20 24 24 C 1.39915 * 125.77595 * 180.02562 * 23 22 21 25 25 C 1.39324 * 120.85727 * 179.69696 * 24 23 22 26 26 C 1.38004 * 119.08206 * 179.80013 * 25 24 23 27 27 N 1.31939 * 120.83246 * 0.47826 * 26 25 24 28 28 C 1.31944 * 121.88150 * 359.74901 * 27 26 25 29 29 C 1.37997 * 120.83586 * 0.02562 * 28 27 26 30 30 C 1.34605 * 108.45185 * 359.75329 * 23 22 21 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 36 36 H 0.96994 * 120.00360 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 0.96999 * 120.00288 * 91.15371 * 17 15 14 40 40 H 1.08004 * 125.95999 * 359.95800 * 21 20 18 41 41 H 1.08007 * 120.45964 * 0.02562 * 25 24 23 42 42 H 1.07999 * 119.58779 * 180.20752 * 26 25 24 43 43 H 1.08003 * 119.58068 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.46087 * 179.97438 * 29 28 27 45 45 H 1.07992 * 126.31622 * 180.26477 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 4.3337 -1.5101 -2.6780 8 6 5.6837 -1.9634 -1.0765 9 7 5.8428 -2.0313 0.2282 10 14 7.0989 -2.4025 -2.2140 11 1 7.4402 -1.2276 -3.0556 12 1 8.2814 -2.7928 -1.4051 13 1 6.6998 -3.5366 -3.0857 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 7 2.2285 0.0461 2.3839 18 6 2.2520 -0.5041 3.6140 19 8 2.1546 -1.7094 3.7430 20 6 2.3946 0.3553 4.8033 21 6 2.5159 1.7638 4.8110 22 7 2.6206 2.1543 6.0513 23 7 2.5717 1.0321 6.8858 24 6 2.6526 1.0473 8.2826 25 6 2.5862 -0.1359 9.0151 26 6 2.6740 -0.0787 10.3912 27 7 2.8094 1.0772 11.0127 28 6 2.8714 2.2191 10.3547 29 6 2.7956 2.2467 8.9770 30 6 2.4276 -0.0640 6.1179 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.6949 -2.3090 0.5992 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.3059 1.0075 2.2811 40 1 2.5212 2.4047 3.9417 41 1 2.4714 -1.0852 8.5128 42 1 2.6269 -0.9913 10.9669 43 1 2.9821 3.1441 10.9012 44 1 2.8467 3.1849 8.4446 45 1 2.3542 -1.0836 6.4660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080681888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 89.297533 kcal Electronic energy + Delta-G solvation = -28460.055163 eV Core-core repulsion = 24479.307801 eV Total energy + Delta-G solvation = -3980.747362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.94633 -41.08955 -40.54669 -38.96100 -35.70242 -35.45436 -34.21988 -32.60936 -32.15068 -31.59854 -31.29964 -29.39813 -27.36674 -25.98978 -25.03317 -24.91780 -23.49567 -22.26345 -21.93833 -21.46549 -20.86130 -19.75482 -18.86681 -17.86366 -17.38266 -17.18308 -16.92687 -16.78417 -16.74595 -16.20477 -15.75642 -15.49948 -15.42649 -15.27412 -14.78059 -14.72941 -14.67946 -14.32737 -14.10569 -13.90197 -13.68306 -13.30842 -13.01574 -12.95099 -12.83391 -12.55275 -12.32447 -12.23578 -12.11324 -11.97341 -11.83195 -11.62746 -11.41856 -11.00859 -10.72357 -10.69532 -10.54616 -10.32365 -10.02859 -9.62250 -8.90386 -7.83047 -5.20648 -0.55674 0.00490 0.70261 0.93865 1.08393 1.44787 1.48736 1.54907 2.19518 2.39864 2.50763 2.72207 3.11988 3.34944 3.43401 3.47770 3.61667 3.72123 3.77864 3.81415 3.93316 4.01184 4.09769 4.14482 4.15396 4.39387 4.45003 4.57350 4.64624 4.67917 4.75673 4.76683 4.87249 4.92004 5.10404 5.11883 5.22883 5.26352 5.33253 5.42251 5.46872 5.53927 5.66119 5.74744 5.82652 6.18703 6.22730 6.64381 6.86573 7.08353 7.31123 7.77953 8.41522 9.25659 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002332 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.709895 B =12001.629961 C =13085.102929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.095 0.905 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.299 1.299 13 H -0.277 1.277 14 C 0.188 3.812 15 C 0.139 3.861 16 H 0.075 0.925 17 N -0.694 5.694 18 C 0.591 3.409 19 O -0.589 6.589 20 C -0.286 4.286 21 C 0.107 3.893 22 N -0.304 5.304 23 N -0.320 5.320 24 C 0.178 3.822 25 C -0.195 4.195 26 C 0.128 3.872 27 N -0.512 5.512 28 C 0.124 3.876 29 C -0.177 4.177 30 C 0.131 3.869 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.025 0.975 36 H 0.243 0.757 37 H 0.018 0.982 38 H -0.011 1.011 39 H 0.413 0.587 40 H 0.231 0.769 41 H 0.162 0.838 42 H 0.196 0.804 43 H 0.193 0.807 44 H 0.152 0.848 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 11.283 16.939 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.113 0.887 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.203 1.203 14 C 0.061 3.939 15 C 0.033 3.967 16 H 0.093 0.907 17 N -0.344 5.344 18 C 0.380 3.620 19 O -0.470 6.470 20 C -0.300 4.300 21 C -0.082 4.082 22 N -0.121 5.121 23 N -0.092 5.092 24 C 0.078 3.922 25 C -0.217 4.217 26 C -0.029 4.029 27 N -0.221 5.221 28 C -0.032 4.032 29 C -0.199 4.199 30 C -0.016 4.016 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.007 0.993 39 H 0.250 0.750 40 H 0.247 0.753 41 H 0.180 0.820 42 H 0.212 0.788 43 H 0.209 0.791 44 H 0.170 0.830 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.415 11.405 18.779 24.759 hybrid contribution 1.202 -1.047 -2.187 2.706 sum -10.214 10.358 16.592 22.065 Atomic orbital electron populations 1.21656 0.91712 1.02246 1.03059 1.22536 0.97257 0.99015 0.92431 0.88692 1.21872 0.85191 0.95805 0.96494 1.44725 1.09473 1.79229 1.02038 1.19469 0.90096 1.37560 0.89826 0.89418 1.25718 1.00702 1.02502 0.97411 1.70229 1.24118 1.54692 1.11074 0.85137 0.78235 0.78380 0.77500 1.19778 1.22514 1.20335 1.21115 0.92786 0.96554 0.83400 1.22050 0.96407 0.93648 0.84644 0.90663 1.45447 1.73565 1.10987 1.04390 1.17477 0.75084 0.86519 0.82951 1.90769 1.52775 1.16465 1.87040 1.20264 1.22203 0.94568 0.92960 1.24796 0.93904 0.93370 0.96109 1.77215 1.25591 1.07716 1.01533 1.45672 1.53747 1.05117 1.04701 1.18216 0.98944 0.96781 0.78296 1.22238 1.05325 0.97765 0.96367 1.23188 0.91903 0.97268 0.90513 1.67797 1.13307 0.99284 1.41760 1.23189 0.92307 0.97578 0.90133 1.22085 1.03667 0.97869 0.96259 1.23348 0.93958 0.94309 0.89984 0.91237 0.90391 0.93107 0.92656 0.95731 0.94748 0.96400 0.99267 0.74993 0.75272 0.82015 0.78760 0.79063 0.82984 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.31 71.98 0.67 -2.19 16 2 C -0.09 -2.79 3.26 -9.40 -0.03 -2.82 16 3 H 0.09 2.58 8.01 -2.39 -0.02 2.56 16 4 C 0.13 5.10 6.70 86.85 0.58 5.69 16 5 N -0.63 -32.51 3.39 -691.98 -2.35 -34.85 16 6 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 7 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 8 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 9 N -0.95 -59.67 10.31 21.65 0.22 -59.45 16 10 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.19 9.66 5.12 86.73 0.44 10.10 16 15 C 0.14 5.19 2.74 46.18 0.13 5.32 16 16 H 0.08 3.06 7.52 -2.39 -0.02 3.04 16 17 N -0.69 -21.26 5.11 -440.18 -2.25 -23.51 16 18 C 0.59 19.81 7.81 86.66 0.68 20.49 16 19 O -0.59 -25.01 16.58 -4.04 -0.07 -25.08 16 20 C -0.29 -7.46 6.13 -20.14 -0.12 -7.58 16 21 C 0.11 2.24 11.50 85.67 0.99 3.22 16 22 N -0.30 -6.91 11.87 -56.22 -0.67 -7.58 16 23 N -0.32 -7.05 3.76 -185.65 -0.70 -7.75 16 24 C 0.18 3.33 6.73 38.38 0.26 3.58 16 25 C -0.19 -2.81 9.52 22.48 0.21 -2.59 16 26 C 0.13 1.66 11.17 84.62 0.95 2.60 16 27 N -0.51 -8.17 10.36 -196.07 -2.03 -10.20 16 28 C 0.12 1.70 11.17 84.62 0.95 2.64 16 29 C -0.18 -2.87 9.73 22.48 0.22 -2.66 16 30 C 0.13 3.04 10.64 84.22 0.90 3.94 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.20 8.08 -2.38 -0.02 1.18 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.02 0.96 7.99 -2.38 -0.02 0.94 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.02 1.02 7.27 -2.39 -0.02 1.00 16 38 H -0.01 -0.68 7.51 -2.38 -0.02 -0.70 16 39 H 0.41 9.41 7.50 -92.71 -0.70 8.71 16 40 H 0.23 2.93 7.50 -2.91 -0.02 2.90 16 41 H 0.16 1.70 6.85 -2.91 -0.02 1.68 16 42 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.15 2.35 7.78 -2.91 -0.02 2.32 16 45 H 0.21 3.96 7.09 -2.91 -0.02 3.94 16 Total: -1.00 -82.67 379.34 2.66 -80.01 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.33 Total: 16.36 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 8.14 Total: 23.36 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -7.77 Total: -143.34 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -82.67 2.66 -80.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080681888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.311 kcal (2) G-P(sol) polarization free energy of solvation -82.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds