Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63702 * 204.15649 * 5 4 2 7 7 H 1.08000 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99820 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99832 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46730 * 90.00315 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99746 * 10 8 6 13 13 H 1.48494 * 109.47029 * 330.00257 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09005 * 110.71759 * 96.17175 * 15 14 5 17 17 N 1.46491 * 110.87204 * 219.37277 * 15 14 5 18 18 C 1.34776 * 120.00103 * 268.60794 * 17 15 14 19 19 O 1.21515 * 120.00180 * 0.02562 * 18 17 15 20 20 C 1.48181 * 119.99839 * 179.97438 * 18 17 15 21 21 C 1.39126 * 119.69271 * 180.02562 * 20 18 17 22 22 C 1.39281 * 118.97754 * 179.97438 * 21 20 18 23 23 N 1.39964 * 120.82030 * 180.02562 * 22 21 20 24 24 C 1.37148 * 126.48252 * 179.97438 * 23 22 21 25 25 C 1.34623 * 106.83352 * 179.97438 * 24 23 22 26 26 N 1.34152 * 108.21257 * 359.97438 * 25 24 23 27 27 C 1.30492 * 109.36082 * 359.74704 * 26 25 24 28 28 C 1.39264 * 118.35479 * 359.97438 * 22 21 20 29 29 C 1.38345 * 119.28213 * 0.02562 * 28 22 21 30 30 N 1.31599 * 120.97250 * 359.73980 * 29 28 22 31 31 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 32 32 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 33 33 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 34 34 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 35 35 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 36 36 H 0.97003 * 120.00159 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 38 38 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 39 39 H 0.97004 * 120.00282 * 88.61671 * 17 15 14 40 40 H 1.08003 * 120.51172 * 0.02562 * 21 20 18 41 41 H 1.08007 * 126.58701 * 359.97438 * 24 23 22 42 42 H 1.08004 * 125.89789 * 179.97438 * 25 24 23 43 43 H 1.08004 * 125.72098 * 180.24491 * 27 26 25 44 44 H 1.07998 * 120.35774 * 180.02562 * 28 22 21 45 45 H 1.07992 * 119.51255 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4659 -1.5641 -1.6059 7 1 4.3356 -1.5090 -2.6766 8 6 5.6852 -1.9613 -1.0745 9 7 5.8437 -2.0289 0.2303 10 14 7.1007 -2.4011 -2.2114 11 1 7.9030 -1.1844 -2.4964 12 1 7.9616 -3.4200 -1.5588 13 1 6.5627 -2.9484 -3.4827 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4471 -1.6630 1.4212 17 7 2.2238 0.0492 2.3829 18 6 2.1947 -0.4932 3.6164 19 8 2.0547 -1.6929 3.7494 20 6 2.3345 0.3733 4.8102 21 6 2.3041 -0.1934 6.0805 22 6 2.4375 0.6349 7.1923 23 7 2.4129 0.1058 8.4878 24 6 2.5335 0.8098 9.6586 25 6 2.4552 -0.0850 10.6614 26 7 2.2907 -1.3033 10.1243 27 6 2.2580 -1.2019 8.8238 28 6 2.5970 2.0025 6.9829 29 6 2.6173 2.4910 5.6887 30 7 2.4934 1.6827 4.6577 31 1 -0.3633 0.5030 0.8961 32 1 -0.3633 0.5247 -0.8837 33 1 -0.3633 -1.0276 -0.0127 34 1 1.4523 -1.6703 -1.4026 35 1 2.1554 -0.1714 -2.0839 36 1 6.6959 -2.3061 0.6017 37 1 4.2425 -0.5982 1.0611 38 1 3.6670 -2.2871 1.0434 39 1 2.3359 1.0069 2.2768 40 1 2.1798 -1.2592 6.2026 41 1 2.6660 1.8772 9.7573 42 1 2.5146 0.1392 11.7162 43 1 2.1322 -2.0204 8.1305 44 1 2.7037 2.6743 7.8217 45 1 2.7403 3.5509 5.5221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080714846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = 102.821775 kcal Electronic energy + Delta-G solvation = -28722.650070 eV Core-core repulsion = 24742.489164 eV Total energy + Delta-G solvation = -3980.160907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77700 -40.74359 -39.18365 -37.48960 -35.30591 -33.95326 -32.68425 -31.98707 -30.92029 -30.37362 -29.84962 -27.93398 -25.70115 -25.09812 -24.56773 -23.50386 -22.12004 -21.33468 -20.75349 -20.09134 -19.87098 -18.91347 -17.19382 -16.95501 -16.51457 -16.35778 -16.03137 -15.70940 -15.07995 -14.96276 -14.77350 -14.67351 -14.26828 -14.16723 -13.82361 -13.72762 -13.57518 -13.16698 -12.79733 -12.74418 -12.36891 -11.99265 -11.71078 -11.63950 -11.35099 -11.03210 -10.78198 -10.70150 -10.60933 -10.42973 -10.30504 -9.98895 -9.94351 -9.78726 -9.70120 -9.66983 -9.48096 -8.96755 -8.63521 -8.52147 -6.83901 -5.69373 -3.04450 0.13338 0.41400 1.81109 2.07386 2.67722 2.76601 3.16609 3.40836 3.45692 3.48202 3.62687 3.86685 4.09186 4.13583 4.25008 4.42038 4.50697 4.54376 4.88055 4.96966 5.01972 5.08253 5.15269 5.27933 5.30035 5.31414 5.43930 5.55214 5.74301 5.82421 5.93053 5.98188 5.99813 6.14478 6.16815 6.25066 6.33165 6.47252 6.62012 6.69396 6.70303 6.91558 7.28381 7.54693 7.55366 7.57276 7.82478 7.85148 8.24835 8.38114 9.21456 9.82259 10.46926 11.41418 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002524 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.436546 B =11091.235966 C =12062.502586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.117 3.883 16 H 0.092 0.908 17 N -0.684 5.684 18 C 0.566 3.434 19 O -0.527 6.527 20 C 0.124 3.876 21 C -0.132 4.132 22 C 0.175 3.825 23 N -0.415 5.415 24 C -0.054 4.054 25 C -0.018 4.018 26 N -0.482 5.482 27 C 0.201 3.799 28 C -0.174 4.174 29 C 0.130 3.870 30 N -0.462 5.462 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.252 0.748 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.408 0.592 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.214 0.786 44 H 0.147 0.853 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 11.983 16.020 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.743 3.257 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.012 3.988 16 H 0.110 0.890 17 N -0.334 5.334 18 C 0.349 3.651 19 O -0.403 6.403 20 C -0.015 4.015 21 C -0.155 4.155 22 C 0.074 3.926 23 N -0.095 5.095 24 C -0.183 4.183 25 C -0.164 4.164 26 N -0.198 5.198 27 C -0.081 4.081 28 C -0.196 4.196 29 C -0.029 4.029 30 N -0.174 5.174 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.243 0.757 40 H 0.176 0.824 41 H 0.198 0.802 42 H 0.194 0.806 43 H 0.231 0.769 44 H 0.164 0.836 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.283 10.628 15.651 21.533 hybrid contribution 1.084 0.748 -0.026 1.317 sum -9.199 11.376 15.625 21.405 Atomic orbital electron populations 1.21701 0.94995 1.01778 1.01041 1.22626 0.94877 0.99632 0.96203 0.90297 1.21612 0.87583 0.95058 0.94322 1.44420 1.07851 1.79292 1.01698 1.19048 0.89236 1.38549 0.88936 0.90281 1.24828 0.97897 1.01723 0.96014 1.69963 1.24135 1.53361 1.09200 0.86118 0.82317 0.77780 0.79526 1.21653 1.21690 1.20666 1.21467 0.89833 1.00434 0.83492 1.22632 1.00670 0.92828 0.82680 0.89037 1.45757 1.70869 1.11878 1.04857 1.17652 0.77986 0.86742 0.82710 1.90815 1.49707 1.13889 1.85917 1.21246 0.96716 0.90299 0.93219 1.21795 1.00990 1.02166 0.90510 1.17947 0.98469 0.93224 0.82986 1.43219 1.53131 1.08939 1.04237 1.22812 1.11637 0.99703 0.84176 1.22439 1.06075 0.88165 0.99691 1.70394 1.18532 1.25181 1.05728 1.25555 1.03525 0.85338 0.93643 1.22067 1.03917 0.93283 1.00353 1.22756 0.93390 1.00296 0.86487 1.67661 1.10749 1.03642 1.35335 0.93127 0.92691 0.92579 0.95927 0.93875 0.93747 0.93074 0.93313 0.75662 0.82428 0.80231 0.80575 0.76913 0.83553 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.29 37.16 0.35 -1.46 16 2 C -0.11 -1.87 3.26 -88.47 -0.29 -2.16 16 3 H 0.08 1.26 8.01 -51.93 -0.42 0.84 16 4 C 0.14 2.82 6.71 -2.47 -0.02 2.81 16 5 N -0.61 -15.42 3.40 -169.99 -0.58 -16.00 16 6 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.46 10.31 55.49 0.57 -26.89 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.17 4.27 5.13 -3.06 -0.02 4.25 16 15 C 0.12 2.20 2.78 -66.10 -0.18 2.02 16 16 H 0.09 1.81 7.44 -51.93 -0.39 1.42 16 17 N -0.68 -11.24 5.10 -52.86 -0.27 -11.51 16 18 C 0.57 9.48 7.81 -12.18 -0.10 9.38 16 19 O -0.53 -10.41 15.96 5.35 0.09 -10.32 16 20 C 0.12 1.66 6.75 -83.04 -0.56 1.10 16 21 C -0.13 -1.53 9.06 -38.86 -0.35 -1.88 16 22 C 0.18 1.69 6.67 -83.38 -0.56 1.13 16 23 N -0.42 -3.94 2.99 -61.91 -0.18 -4.13 16 24 C -0.05 -0.43 10.89 -16.45 -0.18 -0.60 16 25 C -0.02 -0.17 11.85 -17.82 -0.21 -0.38 16 26 N -0.48 -5.59 11.24 -14.46 -0.16 -5.75 16 27 C 0.20 2.07 11.95 -89.59 -1.07 1.00 16 28 C -0.17 -1.28 9.55 -39.16 -0.37 -1.66 16 29 C 0.13 1.05 11.17 -17.61 -0.20 0.85 16 30 N -0.46 -5.34 9.54 -9.87 -0.09 -5.44 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.02 0.45 8.03 -51.93 -0.42 0.04 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.05 1.39 7.27 -51.93 -0.38 1.02 16 38 H 0.05 1.39 7.51 -51.93 -0.39 1.00 16 39 H 0.41 5.94 7.89 -40.82 -0.32 5.62 16 40 H 0.16 1.77 6.49 -52.48 -0.34 1.43 16 41 H 0.18 0.76 7.23 -52.48 -0.38 0.38 16 42 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.21 1.72 7.15 -52.48 -0.38 1.34 16 44 H 0.15 0.62 6.94 -52.49 -0.36 0.25 16 45 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.22 376.82 -9.83 -45.05 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.85 Total: 4.54 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -4.01 Total: 7.52 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.72 Total: -69.71 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.22 -9.83 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080714846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.871 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds