Wall clock time and date at job start Sat Apr 11 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63702 * 204.15649 * 5 4 2 7 7 H 1.08000 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99820 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99832 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46730 * 90.00315 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99746 * 10 8 6 13 13 H 1.48494 * 109.47029 * 330.00257 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09005 * 110.71759 * 96.17175 * 15 14 5 17 17 N 1.46491 * 110.87204 * 219.37277 * 15 14 5 18 18 C 1.34776 * 120.00103 * 268.60794 * 17 15 14 19 19 O 1.21515 * 120.00180 * 0.02562 * 18 17 15 20 20 C 1.48181 * 119.99839 * 179.97438 * 18 17 15 21 21 C 1.39126 * 119.69271 * 180.02562 * 20 18 17 22 22 C 1.39281 * 118.97754 * 179.97438 * 21 20 18 23 23 N 1.39964 * 120.82030 * 180.02562 * 22 21 20 24 24 C 1.37148 * 126.48252 * 179.97438 * 23 22 21 25 25 C 1.34623 * 106.83352 * 179.97438 * 24 23 22 26 26 N 1.34152 * 108.21257 * 359.97438 * 25 24 23 27 27 C 1.30492 * 109.36082 * 359.74704 * 26 25 24 28 28 C 1.39264 * 118.35479 * 359.97438 * 22 21 20 29 29 C 1.38345 * 119.28213 * 0.02562 * 28 22 21 30 30 N 1.31599 * 120.97250 * 359.73980 * 29 28 22 31 31 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 32 32 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 33 33 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 34 34 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 35 35 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 36 36 H 0.97003 * 120.00159 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 38 38 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 39 39 H 0.97004 * 120.00282 * 88.61671 * 17 15 14 40 40 H 1.08003 * 120.51172 * 0.02562 * 21 20 18 41 41 H 1.08007 * 126.58701 * 359.97438 * 24 23 22 42 42 H 1.08004 * 125.89789 * 179.97438 * 25 24 23 43 43 H 1.08004 * 125.72098 * 180.24491 * 27 26 25 44 44 H 1.07998 * 120.35774 * 180.02562 * 28 22 21 45 45 H 1.07992 * 119.51255 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4659 -1.5641 -1.6059 7 1 4.3356 -1.5090 -2.6766 8 6 5.6852 -1.9613 -1.0745 9 7 5.8437 -2.0289 0.2303 10 14 7.1007 -2.4011 -2.2114 11 1 7.9030 -1.1844 -2.4964 12 1 7.9616 -3.4200 -1.5588 13 1 6.5627 -2.9484 -3.4827 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4471 -1.6630 1.4212 17 7 2.2238 0.0492 2.3829 18 6 2.1947 -0.4932 3.6164 19 8 2.0547 -1.6929 3.7494 20 6 2.3345 0.3733 4.8102 21 6 2.3041 -0.1934 6.0805 22 6 2.4375 0.6349 7.1923 23 7 2.4129 0.1058 8.4878 24 6 2.5335 0.8098 9.6586 25 6 2.4552 -0.0850 10.6614 26 7 2.2907 -1.3033 10.1243 27 6 2.2580 -1.2019 8.8238 28 6 2.5970 2.0025 6.9829 29 6 2.6173 2.4910 5.6887 30 7 2.4934 1.6827 4.6577 31 1 -0.3633 0.5030 0.8961 32 1 -0.3633 0.5247 -0.8837 33 1 -0.3633 -1.0276 -0.0127 34 1 1.4523 -1.6703 -1.4026 35 1 2.1554 -0.1714 -2.0839 36 1 6.6959 -2.3061 0.6017 37 1 4.2425 -0.5982 1.0611 38 1 3.6670 -2.2871 1.0434 39 1 2.3359 1.0069 2.2768 40 1 2.1798 -1.2592 6.2026 41 1 2.6660 1.8772 9.7573 42 1 2.5146 0.1392 11.7162 43 1 2.1322 -2.0204 8.1305 44 1 2.7037 2.6743 7.8217 45 1 2.7403 3.5509 5.5221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080714846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:35 Heat of formation + Delta-G solvation = 79.534557 kcal Electronic energy + Delta-G solvation = -28723.659880 eV Core-core repulsion = 24742.489164 eV Total energy + Delta-G solvation = -3981.170716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.47244 -41.71723 -40.45149 -39.05592 -36.11755 -35.62319 -34.30577 -32.83907 -32.17562 -31.69013 -30.53094 -29.59982 -27.42604 -26.24052 -25.38043 -24.94668 -23.12450 -22.19379 -21.94080 -21.57885 -21.19874 -19.90154 -18.90187 -18.18291 -17.70618 -17.09193 -17.04720 -16.77001 -16.75340 -16.12127 -15.91750 -15.61693 -15.48078 -15.14038 -14.93700 -14.76055 -14.65154 -14.49328 -14.31119 -14.09259 -13.71774 -13.34547 -13.13181 -13.04481 -12.88796 -12.59294 -12.42583 -12.22060 -12.10558 -11.87233 -11.70030 -11.49400 -11.47740 -11.25293 -10.80546 -10.75637 -10.52652 -10.21877 -10.03712 -9.62357 -8.93714 -7.85580 -5.23342 -0.67162 -0.35616 1.10080 1.36343 1.43844 1.46631 1.55361 1.65213 1.97895 2.02139 2.48399 2.68572 2.97504 3.31558 3.33521 3.43015 3.59118 3.62084 3.73622 3.76223 3.79885 4.03386 4.09047 4.10508 4.34004 4.44644 4.46619 4.47900 4.53530 4.60916 4.67964 4.70947 4.88252 5.05449 5.07099 5.13352 5.16307 5.27714 5.27985 5.43829 5.49100 5.57964 5.64426 5.74861 6.00060 6.15222 6.34198 6.66679 6.86756 7.03719 7.10155 7.74550 8.38412 9.23709 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002524 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.436546 B =11091.235966 C =12062.502586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.090 0.910 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.981 3.019 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.266 1.266 14 C 0.189 3.811 15 C 0.132 3.868 16 H 0.080 0.920 17 N -0.678 5.678 18 C 0.562 3.438 19 O -0.570 6.570 20 C 0.099 3.901 21 C -0.140 4.140 22 C 0.169 3.831 23 N -0.418 5.418 24 C -0.040 4.040 25 C -0.042 4.042 26 N -0.515 5.515 27 C 0.178 3.822 28 C -0.146 4.146 29 C 0.133 3.867 30 N -0.476 5.476 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.243 0.757 37 H 0.016 0.984 38 H -0.008 1.008 39 H 0.418 0.582 40 H 0.147 0.853 41 H 0.224 0.776 42 H 0.199 0.801 43 H 0.218 0.782 44 H 0.192 0.808 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 15.750 16.504 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.109 0.891 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.809 3.191 11 H -0.210 1.210 12 H -0.226 1.226 13 H -0.190 1.190 14 C 0.062 3.938 15 C 0.026 3.974 16 H 0.098 0.902 17 N -0.328 5.328 18 C 0.347 3.653 19 O -0.449 6.449 20 C -0.038 4.038 21 C -0.163 4.163 22 C 0.067 3.933 23 N -0.098 5.098 24 C -0.168 4.168 25 C -0.186 4.186 26 N -0.232 5.232 27 C -0.103 4.103 28 C -0.167 4.167 29 C -0.026 4.026 30 N -0.189 5.189 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.011 0.989 39 H 0.256 0.744 40 H 0.165 0.835 41 H 0.240 0.760 42 H 0.216 0.784 43 H 0.234 0.766 44 H 0.209 0.791 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.308 14.429 16.111 24.406 hybrid contribution 1.380 -0.361 -0.083 1.429 sum -9.928 14.068 16.028 23.524 Atomic orbital electron populations 1.21650 0.91623 1.02297 1.03043 1.22549 0.97377 0.98915 0.92517 0.89093 1.21885 0.85152 0.95865 0.96342 1.44747 1.09530 1.79294 1.01880 1.19520 0.90007 1.37447 0.89858 0.89245 1.25741 1.00759 1.02474 0.97447 1.70235 1.24079 1.54809 1.11133 0.85037 0.78838 0.77260 0.77957 1.20962 1.22602 1.19015 1.21083 0.92410 0.96600 0.83662 1.22199 0.96875 0.93696 0.84606 0.90170 1.45591 1.70946 1.12016 1.04230 1.18262 0.76548 0.86773 0.83711 1.90779 1.51459 1.15949 1.86679 1.20606 1.00324 0.90979 0.91868 1.21728 1.01434 1.02191 0.90950 1.18032 0.98800 0.94061 0.82385 1.43300 1.53014 1.08827 1.04633 1.23501 1.09232 1.01305 0.82809 1.22962 1.06711 0.87632 1.01285 1.70357 1.19373 1.27055 1.06439 1.25724 1.04612 0.86327 0.93684 1.22582 1.00173 0.92411 1.01584 1.23530 0.91610 1.01595 0.85889 1.67596 1.11218 1.02814 1.37247 0.91547 0.90207 0.92887 0.95403 0.92433 0.94734 0.96542 0.98930 0.74378 0.83543 0.75959 0.78374 0.76554 0.79080 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.29 71.98 0.67 -2.36 16 2 C -0.09 -2.99 3.26 -9.40 -0.03 -3.02 16 3 H 0.09 2.72 8.01 -2.39 -0.02 2.70 16 4 C 0.13 5.24 6.71 86.84 0.58 5.83 16 5 N -0.63 -32.94 3.40 -691.73 -2.35 -35.29 16 6 C -0.24 -13.63 10.28 84.03 0.86 -12.77 16 7 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 8 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 9 N -0.95 -60.14 10.31 21.65 0.22 -59.92 16 10 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.19 9.91 5.13 86.73 0.44 10.36 16 15 C 0.13 5.17 2.78 46.18 0.13 5.30 16 16 H 0.08 3.34 7.44 -2.38 -0.02 3.32 16 17 N -0.68 -22.99 5.10 -439.46 -2.24 -25.24 16 18 C 0.56 19.88 7.81 86.89 0.68 20.55 16 19 O -0.57 -24.39 15.96 -3.76 -0.06 -24.45 16 20 C 0.10 2.70 6.75 41.86 0.28 2.98 16 21 C -0.14 -3.32 9.06 22.73 0.21 -3.12 16 22 C 0.17 2.93 6.67 38.34 0.26 3.19 16 23 N -0.42 -7.26 2.99 -349.78 -1.04 -8.30 16 24 C -0.04 -0.50 10.89 83.03 0.90 0.40 16 25 C -0.04 -0.68 11.85 83.51 0.99 0.31 16 26 N -0.51 -11.97 11.24 -199.68 -2.25 -14.21 16 27 C 0.18 3.75 11.95 179.99 2.15 5.90 16 28 C -0.15 -1.50 9.55 22.54 0.22 -1.29 16 29 C 0.13 1.61 11.17 84.75 0.95 2.56 16 30 N -0.48 -10.23 9.54 -185.13 -1.77 -12.00 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.03 1.09 8.03 -2.39 -0.02 1.07 16 35 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.24 15.06 8.31 -92.71 -0.77 14.28 16 37 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 38 H -0.01 -0.47 7.51 -2.39 -0.02 -0.49 16 39 H 0.42 12.16 7.89 -92.71 -0.73 11.42 16 40 H 0.15 3.66 6.49 -2.91 -0.02 3.64 16 41 H 0.22 0.58 7.23 -2.91 -0.02 0.55 16 42 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.22 3.97 7.15 -2.91 -0.02 3.95 16 44 H 0.19 0.26 6.94 -2.91 -0.02 0.24 16 45 H 0.22 0.69 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -84.13 376.82 2.60 -81.54 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.30 Total: 17.84 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 9.75 Total: 31.09 kcal Atomic # 7 Polarization: -145.53 SS G_CDS: -9.42 Total: -154.96 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.06 Total: -24.45 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -84.13 2.60 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080714846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.071 kcal (2) G-P(sol) polarization free energy of solvation -84.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds