Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99438 * 2 1 4 4 C 1.54319 * 109.88188 * 238.90101 * 2 1 3 5 5 H 1.09000 * 110.87602 * 336.82333 * 4 2 1 6 6 N 1.46504 * 110.72018 * 100.02891 * 4 2 1 7 7 C 1.34777 * 119.99587 * 199.97421 * 6 4 2 8 8 O 1.21556 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.47833 * 119.99336 * 180.02562 * 7 6 4 10 10 N 1.34566 * 126.03126 * 359.97438 * 9 7 6 11 11 C 1.30867 * 107.29482 * 179.75554 * 10 9 7 12 12 N 1.34885 * 107.58626 * 0.39077 * 11 10 9 13 13 C 1.40145 * 125.76653 * 179.86854 * 12 11 10 14 14 C 1.38847 * 120.06942 * 359.67066 * 13 12 11 15 15 C 1.38120 * 119.93263 * 180.02562 * 14 13 12 16 16 C 1.38285 * 120.06514 * 359.97438 * 15 14 13 17 17 C 1.38276 * 120.13935 * 0.02562 * 16 15 14 18 18 C 1.38118 * 120.06498 * 359.97438 * 17 16 15 19 19 N 1.28852 * 108.46290 * 359.60074 * 12 11 10 20 20 C 1.55158 * 102.93980 * 218.39133 * 4 2 1 21 21 C 1.54903 * 101.58323 * 35.50114 * 20 4 2 22 22 N 1.47021 * 109.88201 * 121.08991 * 2 1 3 23 23 C 1.36935 * 125.65137 * 298.32587 * 22 2 1 24 24 H 1.08008 * 120.00212 * 0.02562 * 23 22 2 25 25 C 1.38810 * 120.00219 * 180.02562 * 23 22 2 26 26 N 1.31617 * 119.99990 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47343 * 89.99575 * 27 25 23 29 29 H 1.48499 * 109.47142 * 209.99921 * 27 25 23 30 30 H 1.48505 * 109.46660 * 329.99936 * 27 25 23 31 31 H 1.08998 * 109.47217 * 181.09786 * 1 2 3 32 32 H 1.09005 * 109.47162 * 301.10335 * 1 2 3 33 33 H 1.09003 * 109.46964 * 61.09515 * 1 2 3 34 34 H 0.96997 * 119.99858 * 19.97313 * 6 4 2 35 35 H 1.08001 * 126.20642 * 180.23407 * 11 10 9 36 36 H 1.08002 * 120.03494 * 0.02562 * 14 13 12 37 37 H 1.07997 * 119.96397 * 180.25317 * 15 14 13 38 38 H 1.07995 * 119.92703 * 179.97438 * 16 15 14 39 39 H 1.07998 * 119.97034 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.03432 * 180.02562 * 18 17 16 41 41 H 1.09003 * 111.00268 * 153.57973 * 20 4 2 42 42 H 1.09003 * 111.00538 * 277.38692 * 20 4 2 43 43 H 1.08995 * 110.36925 * 81.83241 * 21 20 4 44 44 H 1.09003 * 110.37008 * 204.14845 * 21 20 4 45 45 H 0.96996 * 119.99805 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1960 -2.2875 7 6 2.5559 -0.2162 -3.5668 8 8 2.3136 -1.3723 -3.8537 9 6 2.9608 0.7378 -4.6210 10 7 3.2555 2.0384 -4.4408 11 6 3.5699 2.5319 -5.6114 12 7 3.4607 1.5371 -6.5157 13 6 3.7077 1.6492 -7.8906 14 6 4.0961 2.8680 -8.4306 15 6 4.3383 2.9754 -9.7861 16 6 4.1947 1.8706 -10.6052 17 6 3.8080 0.6554 -10.0705 18 6 3.5644 0.5417 -8.7158 19 7 3.0964 0.4649 -5.9009 20 6 3.2876 -1.5143 -0.6922 21 6 2.8145 -1.8793 0.7369 22 7 2.0300 -0.7139 1.1840 23 6 1.8049 -0.3555 2.4863 24 1 1.2141 0.5203 2.7110 25 6 2.3361 -1.1176 3.5177 26 7 3.0557 -2.1851 3.2440 27 14 2.0285 -0.6289 5.2943 28 1 0.7886 -1.2855 5.7807 29 1 3.1772 -1.0582 6.1317 30 1 1.8751 0.8456 5.3825 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3634 0.5309 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.6485 1.1186 -2.0586 35 1 3.8613 3.5514 -5.8165 36 1 4.2088 3.7311 -7.7913 37 1 4.6444 3.9222 -10.2060 38 1 4.3842 1.9572 -11.6649 39 1 3.6963 -0.2056 -10.7128 40 1 3.2628 -0.4078 -8.2986 41 1 3.4852 -2.4111 -1.2794 42 1 4.1656 -0.8691 -0.6609 43 1 2.1886 -2.7714 0.7131 44 1 3.6715 -2.0338 1.3925 45 1 3.4266 -2.7178 3.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088647595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 125.165150 kcal Electronic energy + Delta-G solvation = -28326.095316 eV Core-core repulsion = 24346.903291 eV Total energy + Delta-G solvation = -3979.192025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.94960 -39.88474 -39.40441 -37.47326 -34.98765 -34.00832 -32.51277 -31.99509 -31.45580 -30.36913 -30.03686 -28.59527 -25.83181 -24.44708 -24.12269 -23.91842 -22.49961 -21.79256 -20.61187 -20.08220 -19.73763 -19.03825 -17.30178 -17.00705 -16.80553 -16.70897 -16.14558 -15.43138 -15.40589 -14.80547 -14.65705 -14.52605 -14.11378 -13.90508 -13.87725 -13.50415 -13.33427 -12.75132 -12.64762 -12.28510 -12.09665 -11.98285 -11.67648 -11.53102 -11.37041 -11.09815 -10.83938 -10.81305 -10.77110 -10.50583 -10.43790 -10.25914 -10.06840 -9.97323 -9.71719 -9.67881 -9.53188 -9.01544 -8.66029 -8.58479 -6.83976 -5.62004 -3.04738 0.14989 0.67336 1.47853 1.74244 1.89922 3.05906 3.12710 3.38323 3.42345 3.47199 3.49164 3.78361 3.97619 4.18826 4.34350 4.48262 4.52054 4.56158 4.69704 4.87943 4.98618 5.29560 5.33757 5.45655 5.56406 5.58047 5.60930 5.66795 5.72369 5.83950 5.85357 5.98830 6.07803 6.17321 6.28590 6.34992 6.38080 6.39285 6.56229 6.64627 6.76430 6.89562 7.13039 7.51848 7.57782 7.66173 7.83040 7.88920 8.30931 8.39059 9.23998 9.84815 10.48817 11.41353 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.001921 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.644123 B =14572.606349 C =14836.217694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.039 0.961 4 C 0.136 3.864 5 H 0.095 0.905 6 N -0.691 5.691 7 C 0.612 3.388 8 O -0.518 6.518 9 C 0.160 3.840 10 N -0.473 5.473 11 C 0.197 3.803 12 N -0.255 5.255 13 C 0.130 3.870 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.115 4.115 17 C -0.098 4.098 18 C -0.102 4.102 19 N -0.253 5.253 20 C -0.154 4.154 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.218 4.218 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.408 0.592 35 H 0.229 0.771 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.110 0.890 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 12.263 -28.504 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.057 0.943 4 C 0.032 3.968 5 H 0.113 0.887 6 N -0.342 5.342 7 C 0.392 3.608 8 O -0.391 6.391 9 C -0.120 4.120 10 N -0.198 5.198 11 C -0.098 4.098 12 N -0.043 5.043 13 C 0.039 3.961 14 C -0.143 4.143 15 C -0.116 4.116 16 C -0.134 4.134 17 C -0.117 4.117 18 C -0.122 4.122 19 N -0.089 5.089 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.347 4.347 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.244 0.756 35 H 0.245 0.755 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.128 0.872 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.028 10.841 -28.296 30.453 hybrid contribution -0.017 1.004 0.814 1.293 sum 3.011 11.845 -27.482 30.077 Atomic orbital electron populations 1.22247 0.97762 1.01492 1.00014 1.20978 0.92650 0.94920 0.86679 0.94340 1.22266 0.97892 0.90592 0.86042 0.88709 1.45792 1.67737 1.14895 1.05791 1.16198 0.78264 0.85166 0.81141 1.90833 1.49396 1.17134 1.81707 1.24055 1.05480 0.91308 0.91119 1.71374 1.17382 1.07528 1.23467 1.26589 1.01633 0.97745 0.83796 1.44597 1.45315 1.07027 1.07406 1.17674 1.03795 0.96298 0.78322 1.20875 1.01550 0.95301 0.96543 1.21034 0.98942 0.99478 0.92151 1.21378 0.98693 0.92716 1.00584 1.21170 0.98008 0.98398 0.94125 1.21131 0.99347 0.98270 0.93430 1.74393 1.17147 1.09931 1.07425 1.23429 0.96680 0.99428 0.99800 1.21959 0.97414 0.88393 0.89448 1.44481 1.59266 1.28221 1.00027 1.19025 1.27024 1.08152 0.80473 0.90419 1.24790 1.00418 0.97449 0.98031 1.69794 1.39151 1.17868 1.30120 0.86077 0.77199 0.77706 0.84528 1.21689 1.21718 1.20729 0.92853 0.92626 0.94260 0.75603 0.75502 0.84603 0.84475 0.84995 0.84558 0.83823 0.91784 0.91823 0.96652 0.87248 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.14 37.16 0.34 -2.62 16 2 C 0.16 3.21 3.48 -66.96 -0.23 2.98 16 3 H 0.04 0.78 7.69 -51.93 -0.40 0.38 16 4 C 0.14 2.60 2.76 -66.10 -0.18 2.42 16 5 H 0.09 1.89 7.41 -51.93 -0.38 1.51 16 6 N -0.69 -11.56 5.20 -52.97 -0.28 -11.84 16 7 C 0.61 10.82 7.83 -12.33 -0.10 10.73 16 8 O -0.52 -10.70 16.81 5.32 0.09 -10.61 16 9 C 0.16 2.50 7.96 -156.30 -1.24 1.26 16 10 N -0.47 -6.21 11.09 -12.29 -0.14 -6.34 16 11 C 0.20 1.87 11.93 -90.21 -1.08 0.80 16 12 N -0.25 -2.81 3.52 -11.77 -0.04 -2.85 16 13 C 0.13 1.10 6.67 -83.60 -0.56 0.54 16 14 C -0.12 -0.64 9.45 -39.40 -0.37 -1.01 16 15 C -0.10 -0.38 10.04 -39.61 -0.40 -0.78 16 16 C -0.12 -0.48 10.04 -39.55 -0.40 -0.87 16 17 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 18 C -0.10 -0.84 9.61 -39.40 -0.38 -1.21 16 19 N -0.25 -3.74 11.32 32.08 0.36 -3.38 16 20 C -0.15 -3.17 6.77 -24.59 -0.17 -3.33 16 21 C 0.15 3.78 5.89 -2.53 -0.01 3.77 16 22 N -0.59 -15.00 3.13 -162.58 -0.51 -15.50 16 23 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 24 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 25 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 26 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 27 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.41 6.17 8.02 -40.82 -0.33 5.85 16 35 H 0.23 0.91 7.01 -52.49 -0.37 0.54 16 36 H 0.14 0.34 6.71 -52.49 -0.35 -0.01 16 37 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 38 H 0.13 0.24 8.06 -52.49 -0.42 -0.18 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 1.35 7.68 -52.48 -0.40 0.95 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 3.02 5.87 -51.93 -0.30 2.71 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -34.59 378.46 -10.57 -45.16 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.89 Total: 3.72 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -5.42 Total: 5.17 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.04 Total: -66.20 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.59 -10.57 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088647595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.330 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds