Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.99438 * 2 1 4 4 C 1.54319 * 109.88188 * 238.90101 * 2 1 3 5 5 H 1.09000 * 110.87602 * 336.82333 * 4 2 1 6 6 N 1.46504 * 110.72018 * 100.02891 * 4 2 1 7 7 C 1.34777 * 119.99587 * 199.97421 * 6 4 2 8 8 O 1.21556 * 120.00429 * 0.02562 * 7 6 4 9 9 C 1.47833 * 119.99336 * 180.02562 * 7 6 4 10 10 N 1.34566 * 126.03126 * 359.97438 * 9 7 6 11 11 C 1.30867 * 107.29482 * 179.75554 * 10 9 7 12 12 N 1.34885 * 107.58626 * 0.39077 * 11 10 9 13 13 C 1.40145 * 125.76653 * 179.86854 * 12 11 10 14 14 C 1.38847 * 120.06942 * 359.67066 * 13 12 11 15 15 C 1.38120 * 119.93263 * 180.02562 * 14 13 12 16 16 C 1.38285 * 120.06514 * 359.97438 * 15 14 13 17 17 C 1.38276 * 120.13935 * 0.02562 * 16 15 14 18 18 C 1.38118 * 120.06498 * 359.97438 * 17 16 15 19 19 N 1.28852 * 108.46290 * 359.60074 * 12 11 10 20 20 C 1.55158 * 102.93980 * 218.39133 * 4 2 1 21 21 C 1.54903 * 101.58323 * 35.50114 * 20 4 2 22 22 N 1.47021 * 109.88201 * 121.08991 * 2 1 3 23 23 C 1.36935 * 125.65137 * 298.32587 * 22 2 1 24 24 H 1.08008 * 120.00212 * 0.02562 * 23 22 2 25 25 C 1.38810 * 120.00219 * 180.02562 * 23 22 2 26 26 N 1.31617 * 119.99990 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47343 * 89.99575 * 27 25 23 29 29 H 1.48499 * 109.47142 * 209.99921 * 27 25 23 30 30 H 1.48505 * 109.46660 * 329.99936 * 27 25 23 31 31 H 1.08998 * 109.47217 * 181.09786 * 1 2 3 32 32 H 1.09005 * 109.47162 * 301.10335 * 1 2 3 33 33 H 1.09003 * 109.46964 * 61.09515 * 1 2 3 34 34 H 0.96997 * 119.99858 * 19.97313 * 6 4 2 35 35 H 1.08001 * 126.20642 * 180.23407 * 11 10 9 36 36 H 1.08002 * 120.03494 * 0.02562 * 14 13 12 37 37 H 1.07997 * 119.96397 * 180.25317 * 15 14 13 38 38 H 1.07995 * 119.92703 * 179.97438 * 16 15 14 39 39 H 1.07998 * 119.97034 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.03432 * 180.02562 * 18 17 16 41 41 H 1.09003 * 111.00268 * 153.57973 * 20 4 2 42 42 H 1.09003 * 111.00538 * 277.38692 * 20 4 2 43 43 H 1.08995 * 110.36925 * 81.83241 * 21 20 4 44 44 H 1.09003 * 110.37008 * 204.14845 * 21 20 4 45 45 H 0.96996 * 119.99805 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4459 -1.6210 6 7 2.4555 0.1960 -2.2875 7 6 2.5559 -0.2162 -3.5668 8 8 2.3136 -1.3723 -3.8537 9 6 2.9608 0.7378 -4.6210 10 7 3.2555 2.0384 -4.4408 11 6 3.5699 2.5319 -5.6114 12 7 3.4607 1.5371 -6.5157 13 6 3.7077 1.6492 -7.8906 14 6 4.0961 2.8680 -8.4306 15 6 4.3383 2.9754 -9.7861 16 6 4.1947 1.8706 -10.6052 17 6 3.8080 0.6554 -10.0705 18 6 3.5644 0.5417 -8.7158 19 7 3.0964 0.4649 -5.9009 20 6 3.2876 -1.5143 -0.6922 21 6 2.8145 -1.8793 0.7369 22 7 2.0300 -0.7139 1.1840 23 6 1.8049 -0.3555 2.4863 24 1 1.2141 0.5203 2.7110 25 6 2.3361 -1.1176 3.5177 26 7 3.0557 -2.1851 3.2440 27 14 2.0285 -0.6289 5.2943 28 1 0.7886 -1.2855 5.7807 29 1 3.1772 -1.0582 6.1317 30 1 1.8751 0.8456 5.3825 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3634 0.5309 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.6485 1.1186 -2.0586 35 1 3.8613 3.5514 -5.8165 36 1 4.2088 3.7311 -7.7913 37 1 4.6444 3.9222 -10.2060 38 1 4.3842 1.9572 -11.6649 39 1 3.6963 -0.2056 -10.7128 40 1 3.2628 -0.4078 -8.2986 41 1 3.4852 -2.4111 -1.2794 42 1 4.1656 -0.8691 -0.6609 43 1 2.1886 -2.7714 0.7131 44 1 3.6715 -2.0338 1.3925 45 1 3.4266 -2.7178 3.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088647595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = 104.055541 kcal Electronic energy + Delta-G solvation = -28327.010698 eV Core-core repulsion = 24346.903291 eV Total energy + Delta-G solvation = -3980.107406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.83793 -41.06232 -40.17724 -39.16432 -35.88668 -35.54720 -33.85656 -33.30686 -32.08191 -31.93427 -30.97745 -30.23577 -27.22451 -25.93216 -25.31715 -25.07498 -23.22219 -22.49229 -22.12491 -21.62987 -21.28210 -19.83613 -18.71139 -18.38610 -17.92013 -17.66034 -17.18928 -16.75023 -16.28615 -15.97342 -15.86936 -15.70853 -15.45632 -15.17562 -15.02256 -14.44685 -14.39745 -14.06377 -14.00201 -13.74825 -13.43975 -13.24231 -12.92815 -12.75408 -12.68672 -12.61008 -12.26757 -12.18223 -12.12823 -12.08874 -11.96845 -11.71124 -11.57214 -11.53297 -11.41304 -11.19214 -10.71935 -10.18146 -10.06925 -9.55641 -8.89120 -7.73000 -5.18142 -0.47036 0.28828 0.50105 0.96273 1.13096 1.49696 1.51514 1.59942 1.85130 2.11409 2.52705 2.71633 2.90509 3.21996 3.37607 3.55000 3.64374 3.81342 3.86433 3.90282 3.92447 4.16705 4.20532 4.34468 4.38156 4.49731 4.50608 4.60401 4.62763 4.72263 4.80069 4.89989 4.97935 4.99295 5.02695 5.08637 5.26932 5.31628 5.32282 5.47523 5.50871 5.53591 5.56344 5.60660 5.80788 5.90593 6.27635 6.31478 6.78304 6.97958 7.12497 7.79689 8.43605 9.29131 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.001921 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.644123 B =14572.606349 C =14836.217694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.153 3.847 3 H 0.053 0.947 4 C 0.152 3.848 5 H 0.087 0.913 6 N -0.679 5.679 7 C 0.614 3.386 8 O -0.557 6.557 9 C 0.134 3.866 10 N -0.491 5.491 11 C 0.212 3.788 12 N -0.248 5.248 13 C 0.093 3.907 14 C -0.113 4.113 15 C -0.093 4.093 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.127 4.127 19 N -0.281 5.281 20 C -0.140 4.140 21 C 0.159 3.841 22 N -0.612 5.612 23 C -0.225 4.225 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.951 5.951 27 Si 0.980 3.020 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.267 1.267 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.418 0.582 35 H 0.284 0.716 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.068 0.932 43 H -0.011 1.011 44 H 0.080 0.920 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 16.194 -31.059 35.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.070 0.930 4 C 0.047 3.953 5 H 0.105 0.895 6 N -0.331 5.331 7 C 0.397 3.603 8 O -0.432 6.432 9 C -0.144 4.144 10 N -0.216 5.216 11 C -0.081 4.081 12 N -0.037 5.037 13 C 0.003 3.997 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.147 4.147 19 N -0.119 5.119 20 C -0.180 4.180 21 C 0.033 3.967 22 N -0.338 5.338 23 C -0.354 4.354 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.601 5.601 27 Si 0.809 3.191 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.191 1.191 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.256 0.744 35 H 0.300 0.700 36 H 0.186 0.814 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.007 0.993 44 H 0.098 0.902 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.405 14.831 -30.892 34.436 hybrid contribution -0.092 -0.134 1.340 1.349 sum 3.313 14.697 -29.552 33.171 Atomic orbital electron populations 1.22129 0.96181 1.00976 1.01324 1.21153 0.93747 0.95038 0.85476 0.92967 1.21897 0.96672 0.90573 0.86133 0.89523 1.45540 1.67519 1.14853 1.05140 1.16440 0.77242 0.85071 0.81558 1.90802 1.51084 1.18939 1.82391 1.23500 1.07961 0.92122 0.90862 1.71312 1.18535 1.06312 1.25466 1.27608 0.99145 0.99079 0.82263 1.44782 1.44080 1.06316 1.08521 1.18104 1.06592 0.97911 0.77102 1.21298 0.99683 0.94686 0.97606 1.21523 0.97414 1.00735 0.91486 1.21804 0.96608 0.91939 1.02176 1.21386 0.97990 0.99965 0.93086 1.21124 1.01085 0.97618 0.94916 1.74304 1.17906 1.12230 1.07436 1.23230 0.97451 0.99967 0.97305 1.21672 0.95866 0.87909 0.91236 1.44705 1.59727 1.28530 1.00807 1.19404 1.26298 1.08116 0.81579 0.89546 1.25635 1.00863 0.97793 1.02002 1.70039 1.40393 1.18980 1.30709 0.85047 0.76460 0.78021 0.79610 1.21717 1.22321 1.19135 0.94227 0.92996 0.91250 0.74370 0.70044 0.81415 0.80984 0.82131 0.83284 0.86582 0.91408 0.91311 0.99282 0.90245 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.14 71.98 0.66 -4.79 16 2 C 0.15 6.23 3.48 45.34 0.16 6.39 16 3 H 0.05 2.03 7.69 -2.39 -0.02 2.01 16 4 C 0.15 5.85 2.76 46.18 0.13 5.98 16 5 H 0.09 3.53 7.41 -2.39 -0.02 3.51 16 6 N -0.68 -22.57 5.20 -439.79 -2.29 -24.86 16 7 C 0.61 22.14 7.83 86.78 0.68 22.82 16 8 O -0.56 -23.87 16.81 -3.89 -0.07 -23.93 16 9 C 0.13 4.22 7.96 137.09 1.09 5.31 16 10 N -0.49 -12.19 11.09 -192.79 -2.14 -14.32 16 11 C 0.21 3.47 11.93 180.21 2.15 5.62 16 12 N -0.25 -5.23 3.52 -191.15 -0.67 -5.90 16 13 C 0.09 1.44 6.67 38.10 0.25 1.69 16 14 C -0.11 -0.74 9.45 22.39 0.21 -0.53 16 15 C -0.09 -0.30 10.04 22.25 0.22 -0.08 16 16 C -0.11 -0.51 10.04 22.29 0.22 -0.28 16 17 C -0.11 -1.03 10.04 22.25 0.22 -0.81 16 18 C -0.13 -2.12 9.61 22.39 0.22 -1.90 16 19 N -0.28 -8.48 11.32 -52.42 -0.59 -9.07 16 20 C -0.14 -5.91 6.77 31.98 0.22 -5.69 16 21 C 0.16 8.19 5.89 86.85 0.51 8.70 16 22 N -0.61 -31.35 3.13 -668.29 -2.09 -33.44 16 23 C -0.23 -12.41 9.89 84.03 0.83 -11.58 16 24 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 25 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 26 N -0.95 -57.36 10.09 21.65 0.22 -57.14 16 27 Si 0.98 45.88 29.55 68.60 2.03 47.90 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 30 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.95 8.05 -2.38 -0.02 1.93 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.42 12.25 8.02 -92.71 -0.74 11.50 16 35 H 0.28 0.79 7.01 -2.91 -0.02 0.77 16 36 H 0.17 -0.09 6.71 -2.91 -0.02 -0.11 16 37 H 0.17 -0.59 8.06 -2.91 -0.02 -0.61 16 38 H 0.16 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.12 2.47 7.68 -2.91 -0.02 2.45 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.08 4.61 5.87 -2.39 -0.01 4.59 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -79.96 378.46 2.92 -77.04 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.28 Total: 16.43 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 8.24 Total: 27.30 kcal Atomic # 7 Polarization: -137.18 SS G_CDS: -7.56 Total: -144.74 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.96 2.92 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088647595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.094 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds