Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.00100 * 2 1 4 4 C 1.54337 * 109.99371 * 238.95814 * 2 1 3 5 5 H 1.09001 * 110.51271 * 336.98684 * 4 2 1 6 6 N 1.46502 * 110.99832 * 100.13091 * 4 2 1 7 7 C 1.34780 * 119.99712 * 200.24066 * 6 4 2 8 8 O 1.21572 * 119.99991 * 359.97438 * 7 6 4 9 9 C 1.47658 * 119.99907 * 180.02562 * 7 6 4 10 10 C 1.40237 * 120.49865 * 180.02562 * 9 7 6 11 11 C 1.38018 * 118.35641 * 179.97438 * 10 9 7 12 12 C 1.39152 * 119.26017 * 359.97438 * 11 10 9 13 13 N 1.39491 * 119.53229 * 180.02562 * 12 11 10 14 14 C 1.37226 * 126.50080 * 179.97438 * 13 12 11 15 15 C 1.34582 * 106.82940 * 179.97438 * 14 13 12 16 16 N 1.34182 * 108.23439 * 0.02562 * 15 14 13 17 17 C 1.30461 * 109.38281 * 359.72310 * 16 15 14 18 18 N 1.32431 * 120.94055 * 0.02562 * 12 11 10 19 19 C 1.31645 * 121.80336 * 359.67668 * 18 12 11 20 20 C 1.55148 * 103.02190 * 218.66816 * 4 2 1 21 21 C 1.54910 * 101.58711 * 35.30761 * 20 4 2 22 22 N 1.47020 * 109.88119 * 121.09360 * 2 1 3 23 23 C 1.36938 * 125.64933 * 298.39298 * 22 2 1 24 24 H 1.07995 * 119.99980 * 344.50388 * 23 22 2 25 25 C 1.38814 * 119.99650 * 164.50061 * 23 22 2 26 26 N 1.31613 * 120.00476 * 350.15870 * 25 23 22 27 27 Si 1.86801 * 119.99765 * 170.16625 * 25 23 22 28 28 H 1.48500 * 109.47137 * 265.15548 * 27 25 23 29 29 H 1.48502 * 109.47337 * 25.15592 * 27 25 23 30 30 H 1.48492 * 109.47579 * 145.15493 * 27 25 23 31 31 H 1.09008 * 109.47051 * 300.36249 * 1 2 3 32 32 H 1.09000 * 109.46705 * 60.35765 * 1 2 3 33 33 H 1.09000 * 109.47255 * 180.35853 * 1 2 3 34 34 H 0.97001 * 120.00276 * 20.23096 * 6 4 2 35 35 H 1.08001 * 120.81595 * 359.97438 * 10 9 7 36 36 H 1.08004 * 120.36792 * 179.97438 * 11 10 9 37 37 H 1.08005 * 126.58268 * 0.02597 * 14 13 12 38 38 H 1.08000 * 125.88534 * 180.02562 * 15 14 13 39 39 H 1.07998 * 125.72137 * 180.30388 * 17 16 15 40 40 H 1.07998 * 119.68476 * 180.28679 * 19 18 12 41 41 H 1.09005 * 111.00654 * 277.23270 * 20 4 2 42 42 H 1.09002 * 111.00581 * 153.38464 * 20 4 2 43 43 H 1.08994 * 110.36926 * 204.15150 * 21 20 4 44 44 H 1.08998 * 110.36757 * 81.82160 * 21 20 4 45 45 H 0.97003 * 120.00093 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3052 -1.4406 -1.6196 6 7 2.4632 0.1937 -2.2892 7 6 2.5609 -0.2211 -3.5678 8 8 2.3129 -1.3766 -3.8526 9 6 2.9703 0.7278 -4.6225 10 6 3.0748 0.3076 -5.9564 11 6 3.4606 1.2315 -6.9064 12 6 3.7305 2.5389 -6.5135 13 7 4.1203 3.4774 -7.4690 14 6 4.4192 4.7974 -7.2422 15 6 4.7448 5.3333 -8.4330 16 7 4.6491 4.3735 -9.3657 17 6 4.2815 3.2563 -8.8011 18 7 3.6225 2.9048 -5.2453 19 6 3.2523 2.0578 -4.3080 20 6 3.2863 -1.5184 -0.6914 21 6 2.8099 -1.8826 0.7370 22 7 2.0299 -0.7140 1.1839 23 6 1.8037 -0.3563 2.4863 24 1 1.4373 0.6326 2.7188 25 6 2.0454 -1.2649 3.5075 26 7 2.3038 -2.5233 3.2214 27 14 2.0037 -0.7015 5.2881 28 1 3.3804 -0.3684 5.7342 29 1 1.1404 0.5009 5.4068 30 1 1.4573 -1.7890 6.1388 31 1 -0.3633 0.5195 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.6613 1.1157 -2.0619 35 1 2.8587 -0.7137 -6.2333 36 1 3.5519 0.9430 -7.9431 37 1 4.3980 5.3078 -6.2906 38 1 5.0334 6.3593 -8.6078 39 1 4.1289 2.3144 -9.3072 40 1 3.1710 2.3942 -3.2849 41 1 4.1669 -0.8769 -0.6578 42 1 3.4807 -2.4156 -1.2790 43 1 3.6655 -2.0412 1.3933 44 1 2.1800 -2.7718 0.7116 45 1 2.4723 -3.1582 3.9351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088782539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = 84.517236 kcal Electronic energy + Delta-G solvation = -28361.631506 eV Core-core repulsion = 24380.676856 eV Total energy + Delta-G solvation = -3980.954651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.42554 -41.71853 -40.49044 -39.08453 -35.74054 -35.35457 -33.93867 -33.82168 -32.08466 -31.60843 -30.60086 -30.08106 -26.87649 -25.91883 -25.53095 -24.96528 -22.89577 -22.13565 -22.01317 -21.55206 -21.35915 -19.94261 -18.87854 -18.64905 -17.92887 -17.08077 -16.89089 -16.55562 -16.37734 -16.06144 -15.86071 -15.72461 -15.29398 -14.95420 -14.87190 -14.74801 -14.62267 -14.33243 -14.25263 -13.99395 -13.88266 -13.73332 -13.18297 -12.91071 -12.79384 -12.58642 -12.27215 -12.08666 -11.94558 -11.88107 -11.65661 -11.52810 -11.37955 -11.26756 -11.18914 -10.80920 -10.67124 -10.16376 -9.90723 -9.55384 -8.82636 -7.86471 -5.23156 -0.83881 -0.02458 0.94503 1.31369 1.48385 1.48843 1.57916 1.80131 1.96144 2.05356 2.51791 2.65991 3.00407 3.34227 3.38447 3.48163 3.61487 3.62479 3.70049 3.82976 3.85848 3.92751 4.05824 4.22628 4.38486 4.42568 4.51763 4.52978 4.62566 4.64240 4.73832 4.81814 4.86474 4.97279 5.05448 5.06448 5.11987 5.16546 5.37666 5.45596 5.57383 5.62084 5.62678 5.70707 6.00578 6.22597 6.44074 6.51107 6.89270 7.08584 7.10765 7.77182 8.44413 9.25848 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.002002 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.751043 B =13980.134304 C =14604.446897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.059 0.941 4 C 0.155 3.845 5 H 0.082 0.918 6 N -0.697 5.697 7 C 0.568 3.432 8 O -0.569 6.569 9 C -0.201 4.201 10 C 0.012 3.988 11 C -0.174 4.174 12 C 0.355 3.645 13 N -0.419 5.419 14 C -0.037 4.037 15 C -0.039 4.039 16 N -0.512 5.512 17 C 0.200 3.800 18 N -0.516 5.516 19 C 0.176 3.824 20 C -0.138 4.138 21 C 0.182 3.818 22 N -0.611 5.611 23 C -0.231 4.231 24 H 0.083 0.917 25 C -0.064 4.064 26 N -0.948 5.948 27 Si 0.973 3.027 28 H -0.289 1.289 29 H -0.265 1.265 30 H -0.300 1.300 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.413 0.587 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.249 0.751 40 H 0.192 0.808 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.029 0.971 44 H 0.000 1.000 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 12.175 -23.087 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.076 0.924 4 C 0.049 3.951 5 H 0.100 0.900 6 N -0.348 5.348 7 C 0.355 3.645 8 O -0.449 6.449 9 C -0.207 4.207 10 C -0.014 4.014 11 C -0.195 4.195 12 C 0.127 3.873 13 N -0.102 5.102 14 C -0.165 4.165 15 C -0.182 4.182 16 N -0.229 5.229 17 C -0.081 4.081 18 N -0.228 5.228 19 C 0.017 3.983 20 C -0.178 4.178 21 C 0.056 3.944 22 N -0.336 5.336 23 C -0.360 4.360 24 H 0.101 0.899 25 C -0.258 4.258 26 N -0.596 5.596 27 Si 0.802 3.198 28 H -0.216 1.216 29 H -0.190 1.190 30 H -0.227 1.227 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.251 0.749 35 H 0.185 0.815 36 H 0.203 0.797 37 H 0.209 0.791 38 H 0.211 0.789 39 H 0.265 0.735 40 H 0.209 0.791 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.222 12.284 -23.650 26.844 hybrid contribution -0.305 -0.751 2.267 2.408 sum 2.916 11.532 -21.383 24.469 Atomic orbital electron populations 1.22126 0.96780 1.00553 1.01160 1.21245 0.93275 0.95414 0.85741 0.92356 1.21712 0.96166 0.90785 0.86422 0.89954 1.45741 1.68442 1.14484 1.06173 1.18146 0.76802 0.87105 0.82436 1.90796 1.51419 1.20041 1.82647 1.20899 1.08741 0.95632 0.95385 1.21809 0.88534 1.01128 0.89961 1.21826 1.03858 0.90198 1.03648 1.18648 0.93744 0.87626 0.87276 1.43282 1.50165 1.08864 1.07918 1.23235 1.07076 0.83735 1.02468 1.22805 1.06428 1.00659 0.88358 1.70361 1.19045 1.00193 1.33302 1.26178 1.02117 1.01163 0.78640 1.67022 1.17196 1.38634 0.99975 1.23088 0.89101 0.87281 0.98856 1.23188 0.97829 1.00274 0.96463 1.21072 0.93489 0.89025 0.90833 1.44713 1.58782 1.29225 1.00888 1.19296 1.38254 0.96673 0.81810 0.89942 1.25698 1.02822 0.95269 1.01978 1.70144 1.55156 1.02576 1.31679 0.85140 0.77547 0.77119 0.80006 1.21581 1.18966 1.22677 0.93586 0.90917 0.94941 0.74854 0.81458 0.79684 0.79111 0.78947 0.73474 0.79148 0.90625 0.91235 0.95271 0.98238 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.15 5.38 3.49 45.34 0.16 5.54 16 3 H 0.06 1.87 7.70 -2.39 -0.02 1.85 16 4 C 0.15 4.93 2.76 46.18 0.13 5.06 16 5 H 0.08 2.91 7.39 -2.39 -0.02 2.89 16 6 N -0.70 -16.00 5.16 -439.94 -2.27 -18.27 16 7 C 0.57 13.47 7.77 86.73 0.67 14.14 16 8 O -0.57 -17.92 16.14 -3.94 -0.06 -17.99 16 9 C -0.20 -3.42 5.89 -19.99 -0.12 -3.53 16 10 C 0.01 0.16 9.70 22.70 0.22 0.39 16 11 C -0.17 -1.79 9.48 22.44 0.21 -1.58 16 12 C 0.35 5.28 7.50 132.89 1.00 6.27 16 13 N -0.42 -6.32 2.98 -355.79 -1.06 -7.38 16 14 C -0.04 -0.57 11.16 83.01 0.93 0.36 16 15 C -0.04 -0.63 11.85 83.50 0.99 0.36 16 16 N -0.51 -9.35 11.24 -199.64 -2.24 -11.59 16 17 C 0.20 2.62 11.89 179.97 2.14 4.76 16 18 N -0.52 -8.57 9.86 -191.85 -1.89 -10.46 16 19 C 0.18 2.57 10.71 85.04 0.91 3.48 16 20 C -0.14 -4.98 6.77 31.98 0.22 -4.76 16 21 C 0.18 8.66 5.36 86.85 0.47 9.13 16 22 N -0.61 -29.11 3.12 -668.23 -2.09 -31.19 16 23 C -0.23 -12.18 9.81 84.03 0.82 -11.36 16 24 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 25 C -0.06 -3.52 5.38 84.86 0.46 -3.07 16 26 N -0.95 -56.04 10.92 21.65 0.24 -55.80 16 27 Si 0.97 44.49 29.56 68.60 2.03 46.52 16 28 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 31 H 0.04 1.66 8.02 -2.38 -0.02 1.64 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.41 6.85 6.38 -92.71 -0.59 6.25 16 35 H 0.17 2.07 7.73 -2.91 -0.02 2.04 16 36 H 0.19 0.49 6.73 -2.91 -0.02 0.47 16 37 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.25 0.92 7.02 -2.91 -0.02 0.90 16 40 H 0.19 1.82 6.41 -2.91 -0.02 1.80 16 41 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.03 1.55 7.31 -2.39 -0.02 1.54 16 44 H 0.00 -0.02 7.95 -2.39 -0.02 -0.04 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -74.99 376.46 2.94 -72.05 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.44 Total: 13.30 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 9.86 Total: 20.81 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -9.32 Total: -134.69 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -74.99 2.94 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088782539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.566 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds