Wall clock time and date at job start Sat Apr 11 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99784 * 2 1 4 4 C 1.54337 * 109.98926 * 238.95930 * 2 1 3 5 5 H 1.08998 * 110.66799 * 337.05065 * 4 2 1 6 6 N 1.46503 * 110.84802 * 100.20020 * 4 2 1 7 7 C 1.34779 * 119.99908 * 200.14679 * 6 4 2 8 8 O 1.21565 * 119.99966 * 359.97438 * 7 6 4 9 9 C 1.47670 * 119.99799 * 180.02562 * 7 6 4 10 10 C 1.40223 * 120.49487 * 180.02562 * 9 7 6 11 11 C 1.38026 * 118.35556 * 179.97438 * 10 9 7 12 12 C 1.39162 * 119.25782 * 359.97438 * 11 10 9 13 13 N 1.39487 * 119.53133 * 180.02562 * 12 11 10 14 14 C 1.35918 * 126.10579 * 179.71125 * 13 12 11 15 15 C 1.35239 * 107.60445 * 179.89498 * 14 13 12 16 16 C 1.40006 * 107.97642 * 0.36703 * 15 14 13 17 17 N 1.30791 * 108.37154 * 359.77224 * 16 15 14 18 18 N 1.32439 * 120.93964 * 0.02562 * 12 11 10 19 19 C 1.31636 * 121.80147 * 359.68291 * 18 12 11 20 20 C 1.55155 * 103.01999 * 218.66603 * 4 2 1 21 21 C 1.54906 * 101.58202 * 35.31209 * 20 4 2 22 22 N 1.47018 * 109.88134 * 121.09861 * 2 1 3 23 23 C 1.36935 * 125.64732 * 298.39226 * 22 2 1 24 24 H 1.08005 * 119.99877 * 359.71120 * 23 22 2 25 25 C 1.38811 * 120.00369 * 179.44633 * 23 22 2 26 26 N 1.31617 * 119.99773 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47154 * 89.99247 * 27 25 23 29 29 H 1.48496 * 109.47375 * 209.99772 * 27 25 23 30 30 H 1.48502 * 109.46736 * 329.99467 * 27 25 23 31 31 H 1.09003 * 109.47492 * 300.36087 * 1 2 3 32 32 H 1.09006 * 109.47327 * 60.35581 * 1 2 3 33 33 H 1.09002 * 109.47636 * 180.35673 * 1 2 3 34 34 H 0.97000 * 119.99733 * 20.14706 * 6 4 2 35 35 H 1.08004 * 120.82533 * 359.97438 * 10 9 7 36 36 H 1.08006 * 120.37211 * 180.02562 * 11 10 9 37 37 H 1.08000 * 126.19615 * 0.03299 * 14 13 12 38 38 H 1.08004 * 126.01303 * 180.13978 * 15 14 13 39 39 H 1.07998 * 125.81394 * 179.74883 * 16 15 14 40 40 H 1.07991 * 119.68262 * 180.31243 * 19 18 12 41 41 H 1.08996 * 111.00485 * 277.23437 * 20 4 2 42 42 H 1.09002 * 111.03305 * 153.40130 * 20 4 2 43 43 H 1.09004 * 110.36614 * 204.15475 * 21 20 4 44 44 H 1.08999 * 110.37158 * 81.82525 * 21 20 4 45 45 H 0.97004 * 120.00382 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3065 -1.4406 -1.6225 6 7 2.4636 0.1967 -2.2863 7 6 2.5637 -0.2148 -3.5658 8 8 2.3175 -1.3699 -3.8538 9 6 2.9736 0.7372 -4.6177 10 6 3.0806 0.3204 -5.9522 11 6 3.4668 1.2470 -6.8995 12 6 3.7346 2.5538 -6.5029 13 7 4.1248 3.4951 -7.4555 14 6 4.4124 4.8022 -7.2189 15 6 4.7485 5.3675 -8.4006 16 6 4.6571 4.3831 -9.3920 17 7 4.2843 3.2635 -8.8280 18 7 3.6243 2.9165 -5.2340 19 6 3.2537 2.0668 -4.2993 20 6 3.2862 -1.5184 -0.6914 21 6 2.8098 -1.8826 0.7368 22 7 2.0299 -0.7141 1.1839 23 6 1.8037 -0.3565 2.4862 24 1 1.2162 0.5215 2.7108 25 6 2.3249 -1.1253 3.5177 26 7 3.0361 -2.1985 3.2440 27 14 2.0158 -0.6379 5.2943 28 1 0.7686 -1.2847 5.7752 29 1 3.1579 -1.0789 6.1346 30 1 1.8750 0.8376 5.3853 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.6604 1.1183 -2.0564 35 1 2.8662 -0.7005 -6.2321 36 1 3.5593 0.9614 -7.9369 37 1 4.3806 5.2989 -6.2604 38 1 5.0334 6.3980 -8.5534 39 1 4.8596 4.5243 -10.4434 40 1 3.1701 2.4007 -3.2758 41 1 4.1668 -0.8770 -0.6579 42 1 3.4812 -2.4156 -1.2790 43 1 3.6654 -2.0412 1.3932 44 1 2.1799 -2.7718 0.7115 45 1 3.4000 -2.7361 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088783923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:25 Heat of formation + Delta-G solvation = 123.573679 kcal Electronic energy + Delta-G solvation = -28335.985837 eV Core-core repulsion = 24356.724801 eV Total energy + Delta-G solvation = -3979.261037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99561 -40.71226 -39.31515 -37.57157 -34.34900 -33.97896 -32.97877 -32.12637 -30.83803 -30.45433 -30.01232 -28.52141 -25.58604 -24.45642 -24.13883 -24.00909 -21.91772 -21.24358 -20.79772 -20.22818 -19.83978 -18.89506 -17.69711 -17.12290 -16.71239 -16.00907 -15.78168 -15.64029 -14.95973 -14.91065 -14.72713 -14.45276 -14.03096 -13.87093 -13.78892 -13.60941 -13.45656 -13.17354 -13.07350 -12.82607 -12.17596 -12.05687 -11.62000 -11.34291 -11.18414 -10.91386 -10.89012 -10.84516 -10.59596 -10.56332 -10.40016 -10.32379 -10.12221 -9.84560 -9.77620 -9.63352 -9.60245 -8.86058 -8.70077 -8.63318 -6.91875 -5.69358 -3.12274 -0.04800 0.72673 1.49434 1.65653 2.32130 2.76130 3.11020 3.37265 3.42371 3.44255 3.51403 3.73383 4.00600 4.32935 4.41820 4.44975 4.52290 4.64875 4.73657 4.97302 5.15615 5.21022 5.22111 5.37740 5.46941 5.48236 5.49898 5.57859 5.65811 5.76334 5.88566 6.06421 6.07288 6.18015 6.24461 6.28560 6.47093 6.53927 6.59067 6.66876 6.80882 6.87707 7.03364 7.37795 7.46748 7.55908 7.58510 7.81339 8.19360 8.31173 9.16568 9.77494 10.40870 11.34135 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.002012 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.963006 B =13914.434883 C =14502.882455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.135 3.865 5 H 0.094 0.906 6 N -0.708 5.708 7 C 0.563 3.437 8 O -0.533 6.533 9 C -0.194 4.194 10 C 0.007 3.993 11 C -0.172 4.172 12 C 0.387 3.613 13 N -0.329 5.329 14 C 0.081 3.919 15 C -0.265 4.265 16 C 0.067 3.933 17 N -0.284 5.284 18 N -0.509 5.509 19 C 0.171 3.829 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.221 4.221 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.396 0.604 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.185 0.815 38 H 0.158 0.842 39 H 0.195 0.805 40 H 0.172 0.828 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.015 0.985 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 12.909 -22.702 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.112 0.888 6 N -0.358 5.358 7 C 0.349 3.651 8 O -0.411 6.411 9 C -0.200 4.200 10 C -0.020 4.020 11 C -0.194 4.194 12 C 0.160 3.840 13 N -0.106 5.106 14 C -0.060 4.060 15 C -0.293 4.293 16 C -0.122 4.122 17 N -0.102 5.102 18 N -0.222 5.222 19 C 0.011 3.989 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.349 4.349 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.189 0.811 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.377 11.592 -22.546 25.463 hybrid contribution -0.093 0.832 0.951 1.267 sum 2.284 12.424 -21.596 25.019 Atomic orbital electron populations 1.22253 0.97794 1.01488 1.00037 1.20983 0.92627 0.94798 0.86858 0.94613 1.22222 0.97789 0.90672 0.86225 0.88793 1.46004 1.68599 1.14284 1.06915 1.17795 0.77910 0.87217 0.82222 1.90794 1.49900 1.18346 1.82033 1.21107 1.07403 0.95793 0.95682 1.21669 0.89467 1.00492 0.90345 1.21589 1.03943 0.91374 1.02473 1.17861 0.93622 0.86485 0.86043 1.45779 1.52200 1.07146 1.05519 1.23011 0.97632 0.84060 1.01254 1.21721 1.13945 1.01986 0.91630 1.24224 0.96981 0.90115 1.00908 1.77481 1.23423 1.23703 0.85628 1.66853 1.17527 1.38524 0.99290 1.22758 0.90393 0.87884 0.97832 1.23404 0.96656 0.99383 0.99793 1.21953 0.97410 0.88363 0.89493 1.44491 1.59402 1.28053 1.00034 1.19011 1.27572 1.07899 0.80448 0.90429 1.24797 1.00419 0.97289 0.98091 1.69796 1.39522 1.17295 1.30224 0.86078 0.77269 0.77717 0.84444 1.21643 1.21670 1.20703 0.92594 0.94310 0.92875 0.76821 0.82366 0.82767 0.79798 0.82449 0.78863 0.81068 0.91925 0.91836 0.87314 0.96681 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.14 37.16 0.34 -2.43 16 2 C 0.16 2.96 3.48 -66.95 -0.23 2.73 16 3 H 0.04 0.65 7.69 -51.93 -0.40 0.26 16 4 C 0.14 2.33 2.76 -66.09 -0.18 2.14 16 5 H 0.09 1.74 7.40 -51.93 -0.38 1.35 16 6 N -0.71 -9.60 5.16 -53.02 -0.27 -9.87 16 7 C 0.56 7.88 7.77 -12.41 -0.10 7.78 16 8 O -0.53 -9.31 16.14 5.31 0.09 -9.23 16 9 C -0.19 -2.17 5.89 -104.81 -0.62 -2.79 16 10 C 0.01 0.07 9.70 -38.91 -0.38 -0.31 16 11 C -0.17 -1.72 9.68 -39.32 -0.38 -2.10 16 12 C 0.39 4.26 7.55 -154.50 -1.17 3.09 16 13 N -0.33 -3.47 3.80 -12.10 -0.05 -3.51 16 14 C 0.08 0.69 11.09 -16.81 -0.19 0.50 16 15 C -0.26 -1.78 10.80 -39.99 -0.43 -2.21 16 16 C 0.07 0.48 12.02 -17.33 -0.21 0.27 16 17 N -0.28 -2.88 11.81 30.65 0.36 -2.52 16 18 N -0.51 -5.43 9.83 -11.99 -0.12 -5.55 16 19 C 0.17 1.67 10.71 -17.14 -0.18 1.49 16 20 C -0.15 -2.92 6.77 -24.59 -0.17 -3.09 16 21 C 0.15 3.62 5.88 -2.53 -0.01 3.61 16 22 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16 23 C -0.22 -5.86 9.87 -15.06 -0.15 -6.01 16 24 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 26 N -0.92 -26.18 10.09 55.49 0.56 -25.62 16 27 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.28 6.37 -40.82 -0.26 4.02 16 35 H 0.16 1.51 7.73 -52.48 -0.41 1.11 16 36 H 0.15 1.39 7.67 -52.48 -0.40 0.98 16 37 H 0.18 1.23 8.05 -52.49 -0.42 0.81 16 38 H 0.16 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.17 1.24 6.41 -52.49 -0.34 0.90 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.11 2.90 5.89 -51.93 -0.31 2.59 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -32.88 377.62 -9.26 -42.13 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.84 Total: 4.49 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.15 Total: 2.30 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.02 Total: -61.91 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.88 -9.26 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088783923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.708 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds