Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99784 * 2 1 4 4 C 1.54337 * 109.98926 * 238.95930 * 2 1 3 5 5 H 1.08998 * 110.66799 * 337.05065 * 4 2 1 6 6 N 1.46503 * 110.84802 * 100.20020 * 4 2 1 7 7 C 1.34779 * 119.99908 * 200.14679 * 6 4 2 8 8 O 1.21565 * 119.99966 * 359.97438 * 7 6 4 9 9 C 1.47670 * 119.99799 * 180.02562 * 7 6 4 10 10 C 1.40223 * 120.49487 * 180.02562 * 9 7 6 11 11 C 1.38026 * 118.35556 * 179.97438 * 10 9 7 12 12 C 1.39162 * 119.25782 * 359.97438 * 11 10 9 13 13 N 1.39487 * 119.53133 * 180.02562 * 12 11 10 14 14 C 1.35918 * 126.10579 * 179.71125 * 13 12 11 15 15 C 1.35239 * 107.60445 * 179.89498 * 14 13 12 16 16 C 1.40006 * 107.97642 * 0.36703 * 15 14 13 17 17 N 1.30791 * 108.37154 * 359.77224 * 16 15 14 18 18 N 1.32439 * 120.93964 * 0.02562 * 12 11 10 19 19 C 1.31636 * 121.80147 * 359.68291 * 18 12 11 20 20 C 1.55155 * 103.01999 * 218.66603 * 4 2 1 21 21 C 1.54906 * 101.58202 * 35.31209 * 20 4 2 22 22 N 1.47018 * 109.88134 * 121.09861 * 2 1 3 23 23 C 1.36935 * 125.64732 * 298.39226 * 22 2 1 24 24 H 1.08005 * 119.99877 * 359.71120 * 23 22 2 25 25 C 1.38811 * 120.00369 * 179.44633 * 23 22 2 26 26 N 1.31617 * 119.99773 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47154 * 89.99247 * 27 25 23 29 29 H 1.48496 * 109.47375 * 209.99772 * 27 25 23 30 30 H 1.48502 * 109.46736 * 329.99467 * 27 25 23 31 31 H 1.09003 * 109.47492 * 300.36087 * 1 2 3 32 32 H 1.09006 * 109.47327 * 60.35581 * 1 2 3 33 33 H 1.09002 * 109.47636 * 180.35673 * 1 2 3 34 34 H 0.97000 * 119.99733 * 20.14706 * 6 4 2 35 35 H 1.08004 * 120.82533 * 359.97438 * 10 9 7 36 36 H 1.08006 * 120.37211 * 180.02562 * 11 10 9 37 37 H 1.08000 * 126.19615 * 0.03299 * 14 13 12 38 38 H 1.08004 * 126.01303 * 180.13978 * 15 14 13 39 39 H 1.07998 * 125.81394 * 179.74883 * 16 15 14 40 40 H 1.07991 * 119.68262 * 180.31243 * 19 18 12 41 41 H 1.08996 * 111.00485 * 277.23437 * 20 4 2 42 42 H 1.09002 * 111.03305 * 153.40130 * 20 4 2 43 43 H 1.09004 * 110.36614 * 204.15475 * 21 20 4 44 44 H 1.08999 * 110.37158 * 81.82525 * 21 20 4 45 45 H 0.97004 * 120.00382 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3065 -1.4406 -1.6225 6 7 2.4636 0.1967 -2.2863 7 6 2.5637 -0.2148 -3.5658 8 8 2.3175 -1.3699 -3.8538 9 6 2.9736 0.7372 -4.6177 10 6 3.0806 0.3204 -5.9522 11 6 3.4668 1.2470 -6.8995 12 6 3.7346 2.5538 -6.5029 13 7 4.1248 3.4951 -7.4555 14 6 4.4124 4.8022 -7.2189 15 6 4.7485 5.3675 -8.4006 16 6 4.6571 4.3831 -9.3920 17 7 4.2843 3.2635 -8.8280 18 7 3.6243 2.9165 -5.2340 19 6 3.2537 2.0668 -4.2993 20 6 3.2862 -1.5184 -0.6914 21 6 2.8098 -1.8826 0.7368 22 7 2.0299 -0.7141 1.1839 23 6 1.8037 -0.3565 2.4862 24 1 1.2162 0.5215 2.7108 25 6 2.3249 -1.1253 3.5177 26 7 3.0361 -2.1985 3.2440 27 14 2.0158 -0.6379 5.2943 28 1 0.7686 -1.2847 5.7752 29 1 3.1579 -1.0789 6.1346 30 1 1.8750 0.8376 5.3853 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3634 -1.0276 0.0064 34 1 2.6604 1.1183 -2.0564 35 1 2.8662 -0.7005 -6.2321 36 1 3.5593 0.9614 -7.9369 37 1 4.3806 5.2989 -6.2604 38 1 5.0334 6.3980 -8.5534 39 1 4.8596 4.5243 -10.4434 40 1 3.1701 2.4007 -3.2758 41 1 4.1668 -0.8770 -0.6579 42 1 3.4812 -2.4156 -1.2790 43 1 3.6654 -2.0412 1.3932 44 1 2.1799 -2.7718 0.7115 45 1 3.4000 -2.7361 3.9648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088783923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = 103.520383 kcal Electronic energy + Delta-G solvation = -28336.855414 eV Core-core repulsion = 24356.724801 eV Total energy + Delta-G solvation = -3980.130613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.64922 -41.61078 -40.44251 -39.07460 -35.72800 -34.85922 -33.92637 -33.66241 -32.06645 -31.53445 -30.97909 -30.06235 -26.84660 -25.90369 -25.41229 -24.99081 -22.81796 -22.07717 -21.88440 -21.53807 -21.35323 -19.60197 -18.83836 -18.64405 -17.94464 -17.12062 -16.72915 -16.53652 -16.31852 -16.01508 -15.85640 -15.67361 -15.36374 -15.12214 -14.64673 -14.55157 -14.34198 -14.28170 -14.00303 -13.92274 -13.69814 -13.68713 -13.21356 -12.91289 -12.75505 -12.59519 -12.22183 -12.12196 -11.96644 -11.93863 -11.58639 -11.55520 -11.47205 -11.33943 -11.18139 -10.81573 -10.71441 -10.29690 -10.09121 -9.40789 -8.87995 -7.73406 -5.17866 -0.84210 -0.03115 0.80978 1.00731 1.49597 1.50781 1.59155 1.77098 1.82353 1.96264 2.53046 2.65042 3.03698 3.33484 3.37254 3.45744 3.61783 3.66869 3.81658 3.85311 3.96874 4.02347 4.06868 4.22512 4.35981 4.50339 4.52361 4.63080 4.65075 4.68261 4.77884 4.83146 4.88026 4.97122 5.02822 5.06158 5.12842 5.16331 5.36601 5.52483 5.56302 5.60230 5.62385 5.82363 5.93889 6.21657 6.32376 6.45489 6.68813 7.10832 7.12923 7.80932 8.44088 9.28616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.002012 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.963006 B =13914.434883 C =14502.882455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.083 0.917 6 N -0.696 5.696 7 C 0.570 3.430 8 O -0.571 6.571 9 C -0.206 4.206 10 C 0.010 3.990 11 C -0.175 4.175 12 C 0.382 3.618 13 N -0.347 5.347 14 C 0.061 3.939 15 C -0.255 4.255 16 C 0.072 3.928 17 N -0.320 5.320 18 N -0.517 5.517 19 C 0.182 3.818 20 C -0.138 4.138 21 C 0.157 3.843 22 N -0.613 5.613 23 C -0.223 4.223 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.951 5.951 27 Si 0.977 3.023 28 H -0.291 1.291 29 H -0.298 1.298 30 H -0.266 1.266 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.413 0.587 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.196 0.804 38 H 0.187 0.813 39 H 0.229 0.771 40 H 0.199 0.801 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.076 0.924 44 H -0.015 1.015 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 15.991 -24.378 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 H 0.075 0.925 4 C 0.048 3.952 5 H 0.101 0.899 6 N -0.348 5.348 7 C 0.357 3.643 8 O -0.451 6.451 9 C -0.212 4.212 10 C -0.016 4.016 11 C -0.197 4.197 12 C 0.155 3.845 13 N -0.125 5.125 14 C -0.078 4.078 15 C -0.282 4.282 16 C -0.117 4.117 17 N -0.138 5.138 18 N -0.230 5.230 19 C 0.023 3.977 20 C -0.178 4.178 21 C 0.031 3.969 22 N -0.338 5.338 23 C -0.352 4.352 24 H 0.105 0.895 25 C -0.263 4.263 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.219 1.219 29 H -0.225 1.225 30 H -0.191 1.191 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.252 0.748 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.213 0.787 38 H 0.205 0.795 39 H 0.246 0.754 40 H 0.215 0.785 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.003 0.997 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.364 14.754 -24.264 28.495 hybrid contribution -0.066 -0.013 1.302 1.304 sum 2.298 14.741 -22.962 27.383 Atomic orbital electron populations 1.22145 0.96491 1.00766 1.01353 1.21207 0.93516 0.95272 0.85615 0.92516 1.21765 0.96276 0.90738 0.86424 0.89909 1.45732 1.68467 1.14489 1.06092 1.18088 0.76744 0.87021 0.82420 1.90783 1.51588 1.20163 1.82585 1.20835 1.09495 0.95894 0.94991 1.21742 0.88877 1.00748 0.90241 1.21619 1.04224 0.91187 1.02701 1.18142 0.92926 0.87007 0.86421 1.45930 1.53191 1.07698 1.05652 1.23446 0.98143 0.83657 1.02587 1.22146 1.12231 1.03133 0.90721 1.24939 0.94905 0.89292 1.02534 1.77467 1.25096 1.25452 0.85777 1.66957 1.18181 1.38558 0.99320 1.23121 0.88772 0.87054 0.98795 1.23198 0.97706 1.00022 0.96887 1.21664 0.95722 0.87806 0.91661 1.44724 1.59880 1.28382 1.00861 1.19387 1.26448 1.07687 0.81692 0.89545 1.25607 1.01096 0.97739 1.01883 1.70047 1.40956 1.18461 1.30634 0.85090 0.76398 0.78047 0.79875 1.21887 1.22456 1.19070 0.93338 0.90876 0.94619 0.74836 0.82063 0.82160 0.78699 0.79538 0.75440 0.78491 0.91050 0.91588 0.90561 0.99716 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.14 71.98 0.66 -4.35 16 2 C 0.15 5.52 3.48 45.34 0.16 5.68 16 3 H 0.06 1.89 7.69 -2.39 -0.02 1.87 16 4 C 0.15 5.11 2.76 46.18 0.13 5.24 16 5 H 0.08 3.01 7.40 -2.39 -0.02 3.00 16 6 N -0.70 -17.38 5.16 -439.93 -2.27 -19.65 16 7 C 0.57 15.11 7.77 86.73 0.67 15.79 16 8 O -0.57 -19.63 16.14 -3.92 -0.06 -19.70 16 9 C -0.21 -4.29 5.89 -19.98 -0.12 -4.41 16 10 C 0.01 0.20 9.70 22.70 0.22 0.42 16 11 C -0.18 -3.37 9.68 22.44 0.22 -3.15 16 12 C 0.38 7.94 7.55 132.89 1.00 8.94 16 13 N -0.35 -6.83 3.80 -192.19 -0.73 -7.56 16 14 C 0.06 0.91 11.09 83.37 0.92 1.84 16 15 C -0.25 -2.70 10.80 22.01 0.24 -2.46 16 16 C 0.07 0.84 12.02 85.28 1.02 1.87 16 17 N -0.32 -6.00 11.81 -56.96 -0.67 -6.68 16 18 N -0.52 -10.08 9.83 -191.84 -1.88 -11.96 16 19 C 0.18 3.15 10.71 85.04 0.91 4.06 16 20 C -0.14 -5.29 6.77 31.98 0.22 -5.07 16 21 C 0.16 7.69 5.88 86.85 0.51 8.20 16 22 N -0.61 -29.65 3.13 -668.26 -2.09 -31.74 16 23 C -0.22 -11.82 9.87 84.03 0.83 -10.99 16 24 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 25 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 26 N -0.95 -56.00 10.09 21.65 0.22 -55.78 16 27 Si 0.98 44.74 29.55 68.60 2.03 46.76 16 28 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 29 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 30 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 31 H 0.05 1.70 8.02 -2.39 -0.02 1.68 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 7.58 6.37 -92.71 -0.59 6.99 16 35 H 0.16 3.03 7.73 -2.91 -0.02 3.00 16 36 H 0.16 2.81 7.67 -2.91 -0.02 2.79 16 37 H 0.20 2.25 8.05 -2.91 -0.02 2.23 16 38 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.20 2.17 6.41 -2.92 -0.02 2.15 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 4.26 5.89 -2.38 -0.01 4.24 16 44 H -0.02 -0.82 8.14 -2.39 -0.02 -0.83 16 45 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.15 377.62 3.03 -70.11 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.44 Total: 18.05 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 8.06 Total: 18.13 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -7.43 Total: -133.36 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.15 3.03 -70.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088783923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.635 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds