Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.99992 * 2 1 4 4 C 1.54338 * 109.99305 * 238.96946 * 2 1 3 5 5 H 1.09007 * 110.51111 * 336.97303 * 4 2 1 6 6 N 1.46498 * 111.00560 * 100.12400 * 4 2 1 7 7 C 1.34771 * 120.00128 * 200.24129 * 6 4 2 8 8 O 1.21552 * 120.00010 * 359.97438 * 7 6 4 9 9 C 1.47863 * 120.00034 * 179.97438 * 7 6 4 10 10 C 1.39656 * 120.08775 * 359.72199 * 9 7 6 11 11 C 1.38021 * 120.09781 * 179.71799 * 10 9 7 12 12 C 1.38160 * 120.26997 * 0.56048 * 11 10 9 13 13 C 1.39417 * 120.17434 * 359.71533 * 12 11 10 14 14 C 1.48417 * 120.04922 * 179.97438 * 13 12 11 15 15 N 1.33976 * 125.65240 * 0.02833 * 14 13 12 16 16 C 1.30674 * 109.78174 * 179.97438 * 15 14 13 17 17 N 1.34524 * 108.29434 * 359.97438 * 16 15 14 18 18 H 0.97003 * 126.74611 * 180.02562 * 17 16 15 19 19 N 1.31491 * 125.64643 * 179.71537 * 14 13 12 20 20 C 1.39091 * 119.89879 * 0.02562 * 13 12 11 21 21 C 1.55161 * 103.02156 * 218.66481 * 4 2 1 22 22 C 1.54907 * 101.58173 * 35.30375 * 21 4 2 23 23 N 1.47024 * 109.88790 * 121.09928 * 2 1 3 24 24 C 1.36932 * 125.64878 * 298.39735 * 23 2 1 25 25 H 1.08002 * 119.99770 * 342.78068 * 24 23 2 26 26 C 1.38810 * 120.00476 * 162.77334 * 24 23 2 27 27 N 1.31617 * 119.99714 * 332.10369 * 26 24 23 28 28 Si 1.86797 * 120.00373 * 152.09705 * 26 24 23 29 29 H 1.48493 * 109.47334 * 180.02562 * 28 26 24 30 30 H 1.48502 * 109.47093 * 300.00759 * 28 26 24 31 31 H 1.48501 * 109.46890 * 60.00322 * 28 26 24 32 32 H 1.09002 * 109.46941 * 300.35159 * 1 2 3 33 33 H 1.08997 * 109.47226 * 60.35637 * 1 2 3 34 34 H 1.09004 * 109.47080 * 180.35391 * 1 2 3 35 35 H 0.97000 * 119.99508 * 20.23223 * 6 4 2 36 36 H 1.08003 * 119.94868 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.86024 * 180.25572 * 11 10 9 38 38 H 1.07998 * 119.91130 * 179.70089 * 12 11 10 39 39 H 1.08003 * 125.85661 * 179.97438 * 16 15 14 40 40 H 1.07999 * 120.13345 * 179.97438 * 20 13 12 41 41 H 1.08998 * 111.00115 * 277.22783 * 21 4 2 42 42 H 1.09002 * 111.00432 * 153.38147 * 21 4 2 43 43 H 1.08997 * 110.36428 * 204.15469 * 22 21 4 44 44 H 1.09003 * 110.36892 * 81.82910 * 22 21 4 45 45 H 0.97004 * 120.00513 * 353.95988 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4405 -1.6198 6 7 2.4631 0.1940 -2.2893 7 6 2.5607 -0.2206 -3.5679 8 8 2.3128 -1.3760 -3.8528 9 6 2.9694 0.7300 -4.6242 10 6 3.2491 2.0592 -4.2998 11 6 3.6362 2.9453 -5.2847 12 6 3.7382 2.5265 -6.5973 13 6 3.4562 1.2035 -6.9347 14 6 3.5661 0.7568 -8.3458 15 7 3.9255 1.5255 -9.3825 16 6 3.9201 0.8175 -10.4809 17 7 3.5529 -0.4391 -10.1715 18 1 3.4616 -1.1848 -10.7851 19 7 3.3324 -0.4606 -8.7846 20 6 3.0706 0.3032 -5.9471 21 6 3.2864 -1.5183 -0.6916 22 6 2.8100 -1.8826 0.7366 23 7 2.0301 -0.7141 1.1838 24 6 1.8040 -0.3566 2.4862 25 1 1.4640 0.6413 2.7209 26 6 2.0115 -1.2766 3.5046 27 7 1.8827 -2.5643 3.2645 28 14 2.4736 -0.6873 5.2159 29 1 2.6384 -1.8578 6.1148 30 1 3.7494 0.0699 5.1510 31 1 1.4009 0.1944 5.7422 32 1 -0.3633 0.5193 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 -0.3633 -1.0277 0.0063 35 1 2.6611 1.1159 -2.0618 36 1 3.1663 2.3933 -3.2761 37 1 3.8555 3.9713 -5.0289 38 1 4.0370 3.2259 -7.3641 39 1 4.1680 1.1792 -11.4679 40 1 2.8508 -0.7224 -6.2043 41 1 4.1670 -0.8767 -0.6581 42 1 3.4808 -2.4154 -1.2794 43 1 3.6656 -2.0412 1.3929 44 1 2.1802 -2.7719 0.7112 45 1 1.5583 -2.8668 2.4018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088790637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 103.466081 kcal Electronic energy + Delta-G solvation = -28349.663548 eV Core-core repulsion = 24369.530581 eV Total energy + Delta-G solvation = -3980.132967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47917 -40.28339 -38.75412 -37.52614 -34.32581 -33.58739 -32.36358 -32.14227 -31.24268 -30.53828 -30.23795 -28.41104 -25.36646 -24.30720 -23.84355 -23.71773 -22.48813 -21.41569 -20.46631 -20.20068 -19.64903 -18.83617 -17.64733 -17.28300 -16.45377 -16.05773 -15.90161 -15.64437 -15.26078 -14.83691 -14.51523 -14.18004 -14.08530 -13.89548 -13.73516 -13.36646 -13.04684 -12.93432 -12.79151 -12.59629 -12.06287 -11.87206 -11.73785 -11.56517 -11.29115 -10.92122 -10.82448 -10.70605 -10.54176 -10.51865 -10.41089 -10.36118 -10.04079 -9.98757 -9.81606 -9.50303 -9.25497 -8.93929 -8.72449 -8.41066 -6.95654 -6.07851 -3.13498 0.41494 0.82196 1.36000 2.18363 2.41968 3.01026 3.16598 3.50694 3.54455 3.56232 3.72810 3.74532 4.13901 4.43038 4.54473 4.61788 4.68339 4.79366 4.97023 5.11503 5.21339 5.31907 5.37484 5.38793 5.47057 5.61371 5.70898 5.72267 5.78580 6.00122 6.04199 6.06546 6.11602 6.14795 6.16322 6.26507 6.39327 6.48936 6.53038 6.55721 6.57239 6.83888 6.98027 7.03916 7.09006 7.56862 7.63107 7.80379 8.30862 8.49361 9.03036 9.82405 10.36968 11.24620 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028759 B = 0.002008 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.369983 B =13937.597962 C =14387.995666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.710 5.710 7 C 0.557 3.443 8 O -0.535 6.535 9 C -0.132 4.132 10 C -0.069 4.069 11 C -0.130 4.130 12 C -0.053 4.053 13 C -0.029 4.029 14 C 0.271 3.729 15 N -0.536 5.536 16 C 0.265 3.735 17 N -0.483 5.483 18 H 0.444 0.556 19 N -0.298 5.298 20 C -0.025 4.025 21 C -0.145 4.145 22 C 0.145 3.855 23 N -0.594 5.594 24 C -0.333 4.333 25 H 0.065 0.935 26 C -0.026 4.026 27 N -0.916 5.916 28 Si 1.064 2.936 29 H -0.286 1.286 30 H -0.294 1.294 31 H -0.294 1.294 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.398 0.602 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.226 0.774 40 H 0.145 0.855 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.028 0.972 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 10.700 -27.584 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.360 5.360 7 C 0.344 3.656 8 O -0.413 6.413 9 C -0.136 4.136 10 C -0.089 4.089 11 C -0.148 4.148 12 C -0.074 4.074 13 C -0.032 4.032 14 C -0.009 4.009 15 N -0.263 5.263 16 C -0.035 4.035 17 N -0.201 5.201 18 H 0.290 0.710 19 N -0.127 5.127 20 C -0.046 4.046 21 C -0.184 4.184 22 C 0.019 3.981 23 N -0.320 5.320 24 C -0.461 4.461 25 H 0.083 0.917 26 C -0.228 4.228 27 N -0.556 5.556 28 Si 0.894 3.106 29 H -0.211 1.211 30 H -0.222 1.222 31 H -0.221 1.221 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.233 0.767 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.833 9.154 -25.654 27.664 hybrid contribution -0.448 0.554 -2.210 2.322 sum 4.385 9.708 -27.865 29.832 Atomic orbital electron populations 1.22199 0.97596 1.01411 1.00069 1.21052 0.92617 0.95017 0.86569 0.94518 1.22137 0.97185 0.90974 0.86550 0.88795 1.45948 1.68960 1.14238 1.06882 1.18148 0.77646 0.87450 0.82396 1.90782 1.49751 1.18547 1.82225 1.19912 1.05340 0.94316 0.93994 1.21529 0.95111 0.92154 1.00069 1.21063 1.01159 1.00305 0.92252 1.21384 0.94805 0.94336 0.96826 1.17317 1.04964 0.94233 0.86645 1.22258 0.97273 0.87169 0.94156 1.70496 1.24369 1.34035 0.97439 1.26112 0.95225 0.82071 1.00055 1.48151 1.52801 1.12002 1.07195 0.70996 1.78341 1.25314 1.20509 0.88581 1.21290 0.92727 1.00162 0.90432 1.23208 0.97205 0.99875 0.98119 1.21538 0.94868 0.90658 0.91028 1.44598 1.57482 1.29217 1.00692 1.19666 1.47894 0.97379 0.81147 0.91728 1.25739 1.00175 0.93986 1.02853 1.70774 1.44572 1.14660 1.25619 0.83530 0.76345 0.75032 0.75675 1.21138 1.22151 1.22072 0.92418 0.94345 0.93090 0.76675 0.85000 0.84558 0.84254 0.75812 0.83765 0.91516 0.91394 0.92735 0.95380 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.14 37.15 0.34 -2.62 16 2 C 0.16 3.11 3.49 -66.95 -0.23 2.88 16 3 H 0.04 0.71 7.70 -51.93 -0.40 0.31 16 4 C 0.14 2.46 2.76 -66.09 -0.18 2.28 16 5 H 0.09 1.84 7.39 -51.92 -0.38 1.45 16 6 N -0.71 -10.42 5.16 -52.96 -0.27 -10.70 16 7 C 0.56 8.65 7.77 -12.32 -0.10 8.55 16 8 O -0.54 -10.28 16.07 5.32 0.09 -10.19 16 9 C -0.13 -1.67 5.87 -105.01 -0.62 -2.28 16 10 C -0.07 -0.66 9.54 -39.13 -0.37 -1.03 16 11 C -0.13 -1.06 10.02 -39.69 -0.40 -1.46 16 12 C -0.05 -0.49 9.68 -39.17 -0.38 -0.87 16 13 C -0.03 -0.33 5.87 -104.95 -0.62 -0.95 16 14 C 0.27 3.12 7.77 -156.63 -1.22 1.90 16 15 N -0.54 -5.14 10.81 -12.38 -0.13 -5.27 16 16 C 0.26 1.45 13.11 -90.70 -1.19 0.26 16 17 N -0.48 -3.05 7.44 29.52 0.22 -2.83 16 18 H 0.44 1.08 8.96 -182.33 -1.63 -0.55 16 19 N -0.30 -3.37 12.42 32.10 0.40 -2.97 16 20 C -0.03 -0.32 9.22 -38.84 -0.36 -0.68 16 21 C -0.14 -2.78 6.77 -24.58 -0.17 -2.95 16 22 C 0.14 3.41 5.30 -2.53 -0.01 3.39 16 23 N -0.59 -14.67 3.02 -162.57 -0.49 -15.16 16 24 C -0.33 -9.18 9.62 -15.06 -0.14 -9.33 16 25 H 0.06 1.77 7.97 -52.49 -0.42 1.35 16 26 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 27 N -0.92 -27.62 12.93 55.49 0.72 -26.91 16 28 Si 1.06 25.25 30.00 -169.99 -5.10 20.15 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 32 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.74 6.36 -40.82 -0.26 4.48 16 36 H 0.13 0.99 6.39 -52.48 -0.34 0.65 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.14 1.11 7.82 -52.49 -0.41 0.70 16 39 H 0.23 -0.02 8.06 -52.48 -0.42 -0.44 16 40 H 0.14 2.04 7.42 -52.49 -0.39 1.66 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 1.39 7.95 -51.93 -0.41 0.98 16 44 H 0.03 0.71 6.80 -51.93 -0.35 0.36 16 45 H 0.27 8.18 6.05 -40.82 -0.25 7.93 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -36.97 377.72 -11.61 -48.58 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.99 Total: 3.32 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -5.73 Total: -3.71 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.44 Total: -63.83 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.97 -11.61 -48.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088790637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.047 kcal (2) G-P(sol) polarization free energy of solvation -36.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds